Non-Coding RNA Search

Ss1.1-Pig4-TMW8044F19.3

Sequence:


               
               GTCTCACCCATGACCAGGACGGGCTCTCAGGATGCCAGCTAGAGATGCATGGACTCGACC
GAATTGGCACCAACAGCGCGCGAATGGTTTTGATTCCCAGCCAAGTGAGATGACAGAGTG
TATGTTAAAAAGCTGAGCGCACCTTTCAGCACCGCGCTCCCTGGATGTGCTCGTGACCAT
GGGCTTGTACTAATCCGCCTCCGTTTTTGGTAAAGTAACATCTCCTCATGCGGTTGACGC
GGAGCACTGAGCAAGACTGAGAATGCCCTTCAGAAGCAGACTCTATGAAGAGCTTAGAAG
AAAAATGTGAAACTACTAGACGGGGCAGCGGGTGGATGCTAAGGAATTACTAAAAACGAC
CCTCCCTGACTTCAGGGACGTTGCCATGATCGTCCAGTCTGGTGATGAAGTAGAGAGAAA
AGGCTTCTCTAGAGAGAACAGTGGGGAAAATTAACCAAGAAATTATGCTTTCCTCCCAAT
TAAAACGTTTAAAAATATAAATGTAATGTTTTCTATATATTACAACTAAAAGAAGGTATT
TGTAAAAACACATAATCTTTAGTGATTGACAAAAGTGAGTGCATTTAAAATAGACTAGGC
TTACTGGTTATAGAAGAATCACGTGTTTATGTTAAAAACGATTCCTGGCAGTGACCAGTG
GCTCTTAAGGGCTTTACAGAGGTATATATGACTAAGGAACCAAGAATAAAGGGTAAAGAA
ATATAAGAGAAACTGTAAGTTCCTTTGGCCATTCGTATTTAGATATAAATATCTAAACTG
GGAACAGTAATTAATAACTGAAATTTCATAAGTATGTTGCGGATATTTAACAATATTTAT
TTCTATTTTCGTATTTCAGAATATTCTATCTAATTTAAAAGAATTGTATCTATAAATTTG
GCACGAGAACTCCATTGTAAATACTTTTAATGAAAATTTGCAGCTTTTTAATATTTTGAC
ATAGTTTTCTATTTATTTCAGGTACCAGAATTATAAAGTATCTAAGTAATATATTTTTGT
TGTTGTTGTTTTTAGGGCTTAGGGGTTAGTTCTCCCTGAGTATATTAATAAAAAGATTAC
TAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCTCACCCATGACCAGGACGGGCTCTCAGGATGCCAGCTAGAGATGCATGGACTCGACC
GAATTGGCACCAACAGCGCGCGAATGGTTTTGATTCCCAGCCAAGTGAGATGACAGAGTG
TATGTTAAAAAGCTGAGCGCACCTTTCAGCACCGCGCTCCCTGGATGTGCTCGTGACCAT
GGGCTTGTACTAATCCGCCTCCGTTTTTGGTAAAGTAACATCTCCTCATGCGGTTGACGC
GGAGCACTGAGCAAGACTGAGAATGCCCTTCAGAAGCAGACTCTATGAAGAGCTTAGAAG
AAAAATGTGAAACTACTAGACGGGGCAGCGGGTGGATGCTAAGGAATTACTAAAAACGAC
CCTCCCTGACTTCAGGGACGTTGCCATGATCGTCCAGTCTGGTGATGAAGTAGAGAGAAA
AGGCTTCTCTAGAGAGAACAGTGGGGAAAATTAACCAAGAAATTATGCTTTCCTCCCAAT
TAAAACGTTTAAAAATATAAATGTAATGTTTTCTATATATTACAACTAAAAGAAGGTATT
TGTAAAAACACATAATCTTTAGTGATTGACAAAAGTGAGTGCATTTAAAATAGACTAGGC
TTACTGGTTATAGAAGAATCACGTGTTTATGTTAAAAACGATTCCTGGCAGTGACCAGTG
GCTCTTAAGGGCTTTACAGAGGTATATATGACTAAGGAACCAAGAATAAAGGGTAAAGAA
ATATAAGAGAAACTGTAAGTTCCTTTGGCCATTCGTATTTAGATATAAATATCTAAACTG
GGAACAGTAATTAATAACTGAAATTTCATAAGTATGTTGCGGATATTTAACAATATTTAT
TTCTATTTTCGTATTTCAGAATATTCTATCTAATTTAAAAGAATTGTATCTATAAATTTG
GCACGAGAACTCCATTGTAAATACTTTTAATGAAAATTTGCAGCTTTTTAATATTTTGAC
ATAGTTTTCTATTTATTTCAGGTACCAGAATTATAAAGTATCTAAGTAATATATTTTTGT
TGTTGTTGTTTTTAGGGCTTAGGGGTTAGTTCTCCCTGAGTATATTAATAAAAAGATTAC
TAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               974-1084, - strand, RNAz p=0.885247

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               974-1084, - strand, RNAz p=0.885247

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               299-1084, gnl|bosTau2|chr16 (35370330-35371107)
               

               
               299-1084, gnl|Hg17|chr1 (3752965-3751807)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-1084, gnl|bosTau2|chr16 (35370330-35371107)
               

               
               299-1084, gnl|Hg17|chr1 (3752965-3751807)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fco (0.471624)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               mga (0.32041)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.471624)
               

               
               amn (0.417711)
               

               
               sin (0.349895)
               

               
               mga (0.32041)
               

               
               kid (0.259471)
               

               
               tes (0.207814)
               

               
               gul (0.177588)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               bla (0.124347)
               

               
               jca (0.11396)

	299-1084, gnl\|bosTau2\|chr16 (35370330-35371107)
	299-1084, gnl\|Hg17\|chr1 (3752965-3751807)

	fco (0.471624)
	amn (0.417711)
	sin (0.349895)
	mga (0.32041)
	kid (0.259471)
	tes (0.207814)
	gul (0.177588)
	fbs (0.175346)
	fhi (0.169578)
	ova (0.129132)
	sug (0.127291)
	bla (0.124347)
	jca (0.11396)