Ss1.1-Pig4-TMW8044F22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TACGGGAGCCGGAGTCCAGAGAAGACTACTTTGGCACCTGCATCAAGTGCAACAAAGGCA TCTACGGGCAGAGCAACGCCTGCCAGGCCTTGGACAGCCTATACCACACCCAGTGCTTTG TTTGCTGCTCCTGCGGGCGAACTTTGCGATGCAAGGCTTTCTACAGTGTCAACGGCTCGG TGTACTGTGAGGAAGATTATCTGTTTTCAGGGTTTCAGGAGGCAGCTGAGAAATGCTGTG TCTGTGGTCACTTGATTTTGGAGAAGATCCTCCAGGCAATGGGAAAGTCCTACCACCCAG GCTGCTTCCGATGCGTTGTTTGCAACAAGTGCCTGGACGGCATCCCCTTCACCGTGGACT TCTCCAACCAGGTGTACTGTGTCACCGACTACCACAAAAATTATGCTCCTAAGTGTGCAG CCTGTGGCCAACCCATCCTCCCCTCAGAGGGCTGTGAGGACATTGTGAGGGTGATATCCA TGGACCGAGATTACCACTTTGAGTGCTACCACTGTGAGGACTGCCGGATGCAGCTGAGTG ATGAGGAAGGCTGCTGCTGCTTCCCTCTGGATGGGCACTTGCTCTGCCACGGCTGTCACA TGCAGCGGCTCAATGCCAGACAGCCCTCTGCCAACTACATCTGAGATGCAGTCACCGCTG CCGCCACCACCACCACCGCTGACAAATTCCTCTGGCCAGTGGGCCCCTCTGAGGCCAGGT GGGGCAAGCAGTGCACTCTGCAGGCCTGGCAGAAGAGTCCTCCAGGGAGGGCCCCAAGGG CCAGCGACCCAAAGATCAAGACATTCCAAATGGATTGTGGAGGAGGAGCCCTCCAGTTGC TAGAGTGACTGGCCTTTTTTCCACGTGTGCAGCCTGTGCCGTAACATATAATTCAGGCAC ACACACAGCCGGGTTCCAGTACCTTCTAAAGGAGTTCTCTTGTGGCACAGTGGAGTAAGG ATCCGGCATCATCGCGGCAGCAGCTTAGGTTGCTGCTGTGGCACGGGTACGATCCCTGGC CCAGAAACTTCCATATGCTGCGGGTGCGGCCAAAAAAAATAAATAAAAATTTTTTTAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TACGGGAGCCGGAGTCCAGAGAAGACTACTTTGGCACCTGCATCAAGTGCAACAAAGGCA TCTACGGGCAGAGCAACGCCTGCCAGGCCTTGGACAGCCTATACCACACCCAGTGCTTTG TTTGCTGCTCCTGCGGGCGAACTTTGCGATGCAAGGCTTTCTACAGTGTCAACGGCTCGG TGTACTGTGAGGAAGATTATCTGTTTTCAGGGTTTCAGGAGGCAGCTGAGAAATGCTGTG TCTGTGGTCACTTGATTTTGGAGAAGATCCTCCAGGCAATGGGAAAGTCCTACCACCCAG GCTGCTTCCGATGCGTTGTTTGCAACAAGTGCCTGGACGGCATCCCCTTCACCGTGGACT TCTCCAACCAGGTGTACTGTGTCACCGACTACCACAAAAATTATGCTCCTAAGTGTGCAG CCTGTGGCCAACCCATCCTCCCCTCAGAGGGCTGTGAGGACATTGTGAGGGTGATATCCA TGGACCGAGATTACCACTTTGAGTGCTACCACTGTGAGGACTGCCGGATGCAGCTGAGTG ATGAGGAAGGCTGCTGCTGCTTCCCTCTGGATGGGCACTTGCTCTGCCACGGCTGTCACA TGCAGCGGCTCAATGCCAGACAGCCCTCTGCCAACTACATCTGAGATGCAGTCACCGCTG CCGCCACCACCACCACCGCTGACAAATTCCTCTGGCCAGTGGGCCCCTCTGAGGCCAGGT GGGGCAAGCAGTGCACTCTGCAGGCCTGGCAGAAGAGTCCTCCAGGGAGGGCCCCAAGGG CCAGCGACCCAAAGATCAAGACATTCCAAATGGATTGTGGAGGAGGAGCCCTCCAGTTGC TAGAGTGACTGGCCTTTTTTCCACGTGTGCAGCCTGTGCCGTAACATATAATTCAGGCAC ACACACAGCCGGGTTCCAGTACCTTCTAAAGGAGTTCTCTTGTGGCACAGTGGAGTAAGG ATCCGGCATCATCGCGGCAGCAGCTTAGGTTGCTGCTGTGGCACGGGTACGATCCCTGGC CCAGAAACTTCCATATGCTGCGGGTGCGGCCAAAAAAAATAAATAAAAATTTTTTTAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 265-397, - strand, RNAz p=0.861072 | |
| 676-795, - strand, RNAz p=0.999902 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 265-397, - strand, RNAz p=0.861072 | |
| 676-795, - strand, RNAz p=0.999902 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 33-136, gnl|bosTau2|chr10 (14066877-14066980) | |
| 33-136, gnl|canFam2|chr8 (6300911-6301036) | |
| 33-136, gnl|danRer3|chr7 (11642675-11642559) | |
| 33-136, gnl|dasNov1|scaffold_64182 (4058-4180) | |
| 33-136, gnl|echTel1|scaffold_175077 (5086-5204) | |
| 33-136, gnl|fr1|chrUn (246619257-246619140) | |
| 33-136, gnl|hg17|chr14 (22517381-22517506) | |
| 33-136, gnl|Hg17|chr14 (22517495-22517392) | |
| 33-136, gnl|loxAfr1|scaffold_17053 (6636-6510) | |
| 33-136, gnl|mm7|chr14 (49439306-49439431) | |
| 33-136, gnl|Mm7|chr14 (49439420-49439317) | |
| 33-136, gnl|monDom2|scaffold_12 (26846035-26845910) | |
| 33-136, gnl|oryCun1|scaffold_80716 (1752-1877) | |
| 33-136, gnl|panTro1|chr15 (21483198-21483323) | |
| 33-136, gnl|rheMac2|chr7 (85798861-85798986) | |
| 33-136, gnl|rn3|chr15 (32649313-32649438) | |
| 33-136, gnl|tetNig1|chrUn_random (21350852-21350735) | |
| 265-397, gnl|bosTau2|chr10 (14069543-14069675) | |
| 265-397, gnl|canFam2|chr8 (6298149-6298308) | |
| 265-397, gnl|danRer3|chr7 (11645258-11645121) | |
| 265-397, gnl|dasNov1|scaffold_70477 (8158-8317) | |
| 265-397, gnl|echTel1|scaffold_292585 (16460-16302) | |
| 265-397, gnl|fr1|chrUn (246630265-246630124) | |
| 265-397, gnl|hg17|chr14 (22514019-22514178) | |
| 265-397, gnl|Hg17|chr14 (22514155-22514023) | |
| 265-397, gnl|loxAfr1|scaffold_17053 (9496-9337) | |
| 265-397, gnl|mm7|chr14 (49436206-49436369) | |
| 265-397, gnl|Mm7|chr14 (49436342-49436210) | |
| 265-397, gnl|monDom2|scaffold_12 (26850139-26849978) | |
| 265-397, gnl|oryCun1|scaffold_206252 (14356-14514) | |
| 265-397, gnl|panTro1|chr15 (21479834-21479994) | |
| 265-397, gnl|rheMac2|chr7 (85795791-85795950) | |
| 265-397, gnl|rn3|chr15 (32646102-32646261) | |
| 265-397, gnl|tetNig1|chrUn_random (21351614-21351475) | |
| 517-813, gnl|bosTau2|chr10 (14071144-14071435) | |
| 517-813, gnl|Hg17|chr14 (22512619-22512327) | |
| 517-813, gnl|Mm7|chr14 (49434891-49434623) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 33-136, gnl|bosTau2|chr10 (14066877-14066980) | |
| 33-136, gnl|canFam2|chr8 (6300911-6301036) | |
| 33-136, gnl|danRer3|chr7 (11642675-11642559) | |
| 33-136, gnl|dasNov1|scaffold_64182 (4058-4180) | |
| 33-136, gnl|echTel1|scaffold_175077 (5086-5204) | |
| 33-136, gnl|fr1|chrUn (246619257-246619140) | |
| 33-136, gnl|hg17|chr14 (22517381-22517506) | |
| 33-136, gnl|Hg17|chr14 (22517495-22517392) | |
| 33-136, gnl|loxAfr1|scaffold_17053 (6636-6510) | |
| 33-136, gnl|mm7|chr14 (49439306-49439431) | |
| 33-136, gnl|Mm7|chr14 (49439420-49439317) | |
| 33-136, gnl|monDom2|scaffold_12 (26846035-26845910) | |
| 33-136, gnl|oryCun1|scaffold_80716 (1752-1877) | |
| 33-136, gnl|panTro1|chr15 (21483198-21483323) | |
| 33-136, gnl|rheMac2|chr7 (85798861-85798986) | |
| 33-136, gnl|rn3|chr15 (32649313-32649438) | |
| 33-136, gnl|tetNig1|chrUn_random (21350852-21350735) | |
| 265-397, gnl|bosTau2|chr10 (14069543-14069675) | |
| 265-397, gnl|canFam2|chr8 (6298149-6298308) | |
| 265-397, gnl|danRer3|chr7 (11645258-11645121) | |
| 265-397, gnl|dasNov1|scaffold_70477 (8158-8317) | |
| 265-397, gnl|echTel1|scaffold_292585 (16460-16302) | |
| 265-397, gnl|fr1|chrUn (246630265-246630124) | |
| 265-397, gnl|hg17|chr14 (22514019-22514178) | |
| 265-397, gnl|Hg17|chr14 (22514155-22514023) | |
| 265-397, gnl|loxAfr1|scaffold_17053 (9496-9337) | |
| 265-397, gnl|mm7|chr14 (49436206-49436369) | |
| 265-397, gnl|Mm7|chr14 (49436342-49436210) | |
| 265-397, gnl|monDom2|scaffold_12 (26850139-26849978) | |
| 265-397, gnl|oryCun1|scaffold_206252 (14356-14514) | |
| 265-397, gnl|panTro1|chr15 (21479834-21479994) | |
| 265-397, gnl|rheMac2|chr7 (85795791-85795950) | |
| 265-397, gnl|rn3|chr15 (32646102-32646261) | |
| 265-397, gnl|tetNig1|chrUn_random (21351614-21351475) | |
| 517-813, gnl|bosTau2|chr10 (14071144-14071435) | |
| 517-813, gnl|Hg17|chr14 (22512619-22512327) | |
| 517-813, gnl|Mm7|chr14 (49434891-49434623) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nlu (0.383362) | |
| fcc (0.197785) | |
| cov (0.132153) | |
| jej (0.0989218) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nlu (0.383362) | |
| fcc (0.197785) | |
| cov (0.132153) | |
| jej (0.0989218) |