Ss1.1-Pig4-TMW8044F24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGGGTCTTTTGTTTTAATGGCTGCATTTCAAAGAACCCATTTAAACTAGGAAAACTCCCC AGGAAGGGGTTGTGTTAGTGCAACAAAGAAGAGCCTGGATGAGGCTCACCAGACACCTCC AGAGGAGACCTTCCTGCCCAGGCCGCTGCAGGGGGCTGGGGGACGCAGAGCCCTTCCCCC ACCCCACCCCTGGGCTAGAGGCCGCCATGGCTGGGTGCTAAGGCACCAGGGCCAGGGAGA GCACGGCCCAGCCCGCGGGTGCGCCAAACCCCCAAGCTGTCAAGAAGCTGGTGGCTCGCA GCCTTCAACCTGCAGTCCTTTGCTCAGGAGGAAGGCATCCTGCTTGGGATCCCGACCCAG GAAGAGCTTCAACATGACGCTGGCATCCTCGGAGCCGCCAGGTCTCAGGATACAGCTTCT GTAGTCCATGCCCACCTTGCCACTCAGGATGCCCTCCTGCTTGAAGCGCGTGTGGAACAT GTCCGCGGAGTACACCTCACTCCACAAGTAGCCGTAGTACTGGGCATCGTAGCCCCCCGC CAGGTGGCCAAAGGTCGCAGGCATGTTGGTCCCTGGTGTGGCTGGGACCCCAAGGATCTC CTGGCAGAGTCGGGCGTACTCCTCAGCCGGGTCTGCGGCCGTCTGCGTGTGCAGGGCCTG GTCTACCTTGGCCAGGACGATCTGGCGCAGGTTGAAGAGGCCTGTGTTGGCCTGCCGGGA CTTGATGAGCTTCTCCAGCAGCTCCTGCGGGATAGCGCTGCCCGTCCGGTAGTGCTGGGA CATCCTGAGCAGCGGCTCTGCCTCCCACACCCAGTTCTCCAGCATCTGCGAGGGTGCCTC CACGAAGTCCCGCTCCACGTGTGTCCCACTGAACATGGCGAACTCGGCCTGGGAGCATAG CTGGTGCATCACATGCCCAAACTCATGGAAGTAGGTCTCCACCTCATCGTGCTGCAGCAG GGAGGGCGCGTCAGGCGTGGGCTTGGTGAAGTTGGCCACCATGGCTGCGATGGCGATCTG GCGGCTCCCGTCCTGCCGCAGGCAGCCTGGCTGCAGGCCAAAGCAGGCTGCGTGCCCATA CTTCCCTTCCCTCGGGTAGAGGTCCAGGTAGAACTTCCCGATGACTTTGCCTGAGGCTGC ATCCCTGACAGAATACAGCATCACATCCTCATGCCACACAGCGGCACCCTCCTCCAGGTG GAAGGTCAGCCCCAGCAGCTCCTGGTAGATGCCCAGGAGCCCACGGGTGACCACCTGCAT GGGGAAGTACTCCTTGAGCAGGTTCTGGTCCACACGGTAGCGTGTCTCCTCCACTTGGTT CATGTAGTAGCGCATGTCCCAGGCGTTGATGCGGCCATCAAAGTCAAGGCCCCGCTTGGT GCACTCGGCCTTCTTCAGCTCCAGGATCACAGCCCGCTCCTGCTCCCCAAGGGGCTTCAG CTTCTGGGCCAGCTCATCTAGGAAAGTGGCCACCACCTGGCTGGTCTTGGCCATGTTCAT CTCCAGCACGTAGTCAGCATGGGTGCTGAACCCCAACAGGCTGGATTTCTGCGCCCGCAG CCTCACCAGCTCCCGGAGGATCGCACAGTTCTCCTCCTTGCACCGACAGTTGAAGGCTTC CTCCACCTTCCT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGGGTCTTTTGTTTTAATGGCTGCATTTCAAAGAACCCATTTAAACTAGGAAAACTCCCC AGGAAGGGGTTGTGTTAGTGCAACAAAGAAGAGCCTGGATGAGGCTCACCAGACACCTCC AGAGGAGACCTTCCTGCCCAGGCCGCTGCAGGGGGCTGGGGGACGCAGAGCCCTTCCCCC ACCCCACCCCTGGGCTAGAGGCCGCCATGGCTGGGTGCTAAGGCACCAGGGCCAGGGAGA GCACGGCCCAGCCCGCGGGTGCGCCAAACCCCCAAGCTGTCAAGAAGCTGGTGGCTCGCA GCCTTCAACCTGCAGTCCTTTGCTCAGGAGGAAGGCATCCTGCTTGGGATCCCGACCCAG GAAGAGCTTCAACATGACGCTGGCATCCTCGGAGCCGCCAGGTCTCAGGATACAGCTTCT GTAGTCCATGCCCACCTTGCCACTCAGGATGCCCTCCTGCTTGAAGCGCGTGTGGAACAT GTCCGCGGAGTACACCTCACTCCACAAGTAGCCGTAGTACTGGGCATCGTAGCCCCCCGC CAGGTGGCCAAAGGTCGCAGGCATGTTGGTCCCTGGTGTGGCTGGGACCCCAAGGATCTC CTGGCAGAGTCGGGCGTACTCCTCAGCCGGGTCTGCGGCCGTCTGCGTGTGCAGGGCCTG GTCTACCTTGGCCAGGACGATCTGGCGCAGGTTGAAGAGGCCTGTGTTGGCCTGCCGGGA CTTGATGAGCTTCTCCAGCAGCTCCTGCGGGATAGCGCTGCCCGTCCGGTAGTGCTGGGA CATCCTGAGCAGCGGCTCTGCCTCCCACACCCAGTTCTCCAGCATCTGCGAGGGTGCCTC CACGAAGTCCCGCTCCACGTGTGTCCCACTGAACATGGCGAACTCGGCCTGGGAGCATAG CTGGTGCATCACATGCCCAAACTCATGGAAGTAGGTCTCCACCTCATCGTGCTGCAGCAG GGAGGGCGCGTCAGGCGTGGGCTTGGTGAAGTTGGCCACCATGGCTGCGATGGCGATCTG GCGGCTCCCGTCCTGCCGCAGGCAGCCTGGCTGCAGGCCAAAGCAGGCTGCGTGCCCATA CTTCCCTTCCCTCGGGTAGAGGTCCAGGTAGAACTTCCCGATGACTTTGCCTGAGGCTGC ATCCCTGACAGAATACAGCATCACATCCTCATGCCACACAGCGGCACCCTCCTCCAGGTG GAAGGTCAGCCCCAGCAGCTCCTGGTAGATGCCCAGGAGCCCACGGGTGACCACCTGCAT GGGGAAGTACTCCTTGAGCAGGTTCTGGTCCACACGGTAGCGTGTCTCCTCCACTTGGTT CATGTAGTAGCGCATGTCCCAGGCGTTGATGCGGCCATCAAAGTCAAGGCCCCGCTTGGT GCACTCGGCCTTCTTCAGCTCCAGGATCACAGCCCGCTCCTGCTCCCCAAGGGGCTTCAG CTTCTGGGCCAGCTCATCTAGGAAAGTGGCCACCACCTGGCTGGTCTTGGCCATGTTCAT CTCCAGCACGTAGTCAGCATGGGTGCTGAACCCCAACAGGCTGGATTTCTGCGCCCGCAG CCTCACCAGCTCCCGGAGGATCGCACAGTTCTCCTCCTTGCACCGACAGTTGAAGGCTTC CTCCACCTTCCT |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 160-442, gnl|bosTau2|chr7 (18373458-18373167) | |
| 160-442, gnl|Hg17|chr19 (2764397-2764107) | |
| 160-442, gnl|Mm7|chr10 (80874118-80873855) | |
| 701-890, gnl|bosTau2|chr20 (8636780-8636969) | |
| 701-890, gnl|canFam2|chr2 (54393908-54394140) | |
| 701-890, gnl|danRer3|chr10 (1133393-1133192) | |
| 701-890, gnl|dasNov1|scaffold_8923 (53654-53884) | |
| 701-890, gnl|echTel1|scaffold_231479 (3573-3805) | |
| 701-890, gnl|fr1|chrUn (58428585-58428788) | |
| 701-890, gnl|galGal2|chrZ (3965300-3965514) | |
| 701-890, gnl|hg17|chr5 (65141071-65141303) | |
| 701-890, gnl|Hg17|chr5 (65141285-65141096) | |
| 701-890, gnl|loxAfr1|scaffold_11098 (26925-26696) | |
| 701-890, gnl|mm7|chr13 (101175217-101174991) | |
| 701-890, gnl|Mm7|chr13 (101175001-101175190) | |
| 701-890, gnl|monDom2|scaffold_27 (31109560-31109793) | |
| 701-890, gnl|oryCun1|scaffold_192062 (9316-9085) | |
| 701-890, gnl|panTro1|chr4 (50791845-50791613) | |
| 701-890, gnl|rheMac2|chr6 (63686128-63686358) | |
| 701-890, gnl|rn3|chr2 (34847818-34847585) | |
| 701-890, gnl|tetNig1|chrUn_random (1983022-1982819) | |
| 701-890, gnl|xenTro1|scaffold_597 (185508-185309) | |
| 1090-1459, gnl|bosTau2|chr20 (8658352-8658721) | |
| 1090-1459, gnl|canFam2|chr2 (54376760-54377064) | |
| 1090-1459, gnl|danRer3|chr15 (4973125-4973415) | |
| 1090-1459, gnl|dasNov1|scaffold_71238 (43243-43547) | |
| 1090-1459, gnl|echTel1|scaffold_219966 (9196-9499) | |
| 1090-1459, gnl|fr1|chrUn (58427863-58428156) | |
| 1090-1459, gnl|galGal2|chrZ (3960657-3960960) | |
| 1090-1459, gnl|hg17|chr5 (65119684-65119986) | |
| 1090-1459, gnl|Hg17|chr5 (65120068-65119699) | |
| 1090-1459, gnl|loxAfr1|scaffold_11098 (49938-49655) | |
| 1090-1459, gnl|mm7|chr13 (101188590-101188287) | |
| 1090-1459, gnl|Mm7|chr13 (101188203-101188572) | |
| 1090-1459, gnl|monDom2|scaffold_27 (31084495-31084798) | |
| 1090-1459, gnl|oryCun1|scaffold_172692 (10081-9778) | |
| 1090-1459, gnl|panTro1|chr4 (50813241-50812939) | |
| 1090-1459, gnl|rheMac2|chr6 (63664593-63664897) | |
| 1090-1459, gnl|rn3|chr2 (34878997-34878694) | |
| 1090-1459, gnl|tetNig1|chrUn_random (1983750-1983457) | |
| 1090-1459, gnl|xenTro1|scaffold_597 (196235-195933) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 160-442, gnl|bosTau2|chr7 (18373458-18373167) | |
| 160-442, gnl|Hg17|chr19 (2764397-2764107) | |
| 160-442, gnl|Mm7|chr10 (80874118-80873855) | |
| 701-890, gnl|bosTau2|chr20 (8636780-8636969) | |
| 701-890, gnl|canFam2|chr2 (54393908-54394140) | |
| 701-890, gnl|danRer3|chr10 (1133393-1133192) | |
| 701-890, gnl|dasNov1|scaffold_8923 (53654-53884) | |
| 701-890, gnl|echTel1|scaffold_231479 (3573-3805) | |
| 701-890, gnl|fr1|chrUn (58428585-58428788) | |
| 701-890, gnl|galGal2|chrZ (3965300-3965514) | |
| 701-890, gnl|hg17|chr5 (65141071-65141303) | |
| 701-890, gnl|Hg17|chr5 (65141285-65141096) | |
| 701-890, gnl|loxAfr1|scaffold_11098 (26925-26696) | |
| 701-890, gnl|mm7|chr13 (101175217-101174991) | |
| 701-890, gnl|Mm7|chr13 (101175001-101175190) | |
| 701-890, gnl|monDom2|scaffold_27 (31109560-31109793) | |
| 701-890, gnl|oryCun1|scaffold_192062 (9316-9085) | |
| 701-890, gnl|panTro1|chr4 (50791845-50791613) | |
| 701-890, gnl|rheMac2|chr6 (63686128-63686358) | |
| 701-890, gnl|rn3|chr2 (34847818-34847585) | |
| 701-890, gnl|tetNig1|chrUn_random (1983022-1982819) | |
| 701-890, gnl|xenTro1|scaffold_597 (185508-185309) | |
| 1090-1459, gnl|bosTau2|chr20 (8658352-8658721) | |
| 1090-1459, gnl|canFam2|chr2 (54376760-54377064) | |
| 1090-1459, gnl|danRer3|chr15 (4973125-4973415) | |
| 1090-1459, gnl|dasNov1|scaffold_71238 (43243-43547) | |
| 1090-1459, gnl|echTel1|scaffold_219966 (9196-9499) | |
| 1090-1459, gnl|fr1|chrUn (58427863-58428156) | |
| 1090-1459, gnl|galGal2|chrZ (3960657-3960960) | |
| 1090-1459, gnl|hg17|chr5 (65119684-65119986) | |
| 1090-1459, gnl|Hg17|chr5 (65120068-65119699) | |
| 1090-1459, gnl|loxAfr1|scaffold_11098 (49938-49655) | |
| 1090-1459, gnl|mm7|chr13 (101188590-101188287) | |
| 1090-1459, gnl|Mm7|chr13 (101188203-101188572) | |
| 1090-1459, gnl|monDom2|scaffold_27 (31084495-31084798) | |
| 1090-1459, gnl|oryCun1|scaffold_172692 (10081-9778) | |
| 1090-1459, gnl|panTro1|chr4 (50813241-50812939) | |
| 1090-1459, gnl|rheMac2|chr6 (63664593-63664897) | |
| 1090-1459, gnl|rn3|chr2 (34878997-34878694) | |
| 1090-1459, gnl|tetNig1|chrUn_random (1983750-1983457) | |
| 1090-1459, gnl|xenTro1|scaffold_597 (196235-195933) |
| Expressed library(ies): 7 entry(ies) | More info |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
| cga (0.279096) | |
| fce (0.271592) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| lnt (0.142308) | |
| med (0.116252) |
| Expressed library(ies): 7 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cga (0.279096) | |
| fce (0.271592) | |
| col (0.195008) | |
| nep (0.183925) | |
| fbs (0.175346) | |
| lnt (0.142308) | |
| med (0.116252) |