Non-Coding RNA Search

Ss1.1-Pig4-TMW8044G01.3

Sequence:


               
               ACAAAATAGCCAATTTTTTTTTAAAGCTTTCATGAACGACTTGACAATTCTGGGTGATAA
AATGTTGATTATATATTGTACTTGATTAAGTGTAGGTATCACAGAATTAGATTGTTATGC
TAACTGGACCCATTAAAAGATAGTTACTTTTTGAGGCAGTGCAGAGCTCTCACAGAAAAC
TAAAATTAAGACGTGTTATGACGGCCAAAACTCTGGCAGAACTTCATGTTTGGGTATGAA
TTATGTTTATATAGATTAAAAATAATTATTTCTTAAGCTCCTTGAGTGTTTTTCTTTTCT
TAGTATTCATGGACTTAAAAATTTGCAGAAGTACAATTTCAGTTAATAGTATTTTCAGCC
CACTACCCTTAGCAAGTAACTGTCAGGTGTAGTTATGTGATTATTAAACAGTTTAGCTCC
CTTACAAATAAAGACAGAAAAATTGGCCAGTTTTCATGACACTAAAATACCATGACAAGA
AAACTTTAGTGAAGATTGGACCCAAAAAGAATATAAAAAGTTTCTAGTTTTGGGGGTTGT
ATTTAAATTTTTTAAAGTTATGTCATAATCTTGAGAACCTGGGTTCATTTGGAGGCGTGA
AATCTTGTTTATTGTTTAGGAGAATGATATTGATTTGATTTAATTATTAATAGATACTTT
TTAATGATTCCTTCTTAGGGCTTTTTCCCCTAAACAATATCTTATGTGCCCTTGAACTAT
TCCTTAAAGCAAGTATATTCACCTAAGAGTTAGTTATAAAGCACTGATGCTTTATGTATA
AACAACTTATTTATTTAGCCTAGCTATACTAGTCACCATCTGTTTCCTTTCTTATTCCTA
TGACCCCTCTGAATTTGTTGCCCAAATAAAAATCTAAATGACAGTTTTCTTAGGCTCATA
CATACCCGGACACAGTTATAAGTAGAAGAAGTTTTGATTTATCAGTCTGTCAAAAAAATT
TTTAAATGCTTGTTAAAGTTGTTTCTCTAGAAATGCTTTATCTTTCTTAGCATTCAAAGG
AATTACTATAGCAAAACAGTCAAAGGTAGGTAGGCTTATTGTTGAGCTGACAGCTAATTC
AACATGGAAAATACTGTTTTTCTTGCTTGGCACATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACAAAATAGCCAATTTTTTTTTAAAGCTTTCATGAACGACTTGACAATTCTGGGTGATAA
AATGTTGATTATATATTGTACTTGATTAAGTGTAGGTATCACAGAATTAGATTGTTATGC
TAACTGGACCCATTAAAAGATAGTTACTTTTTGAGGCAGTGCAGAGCTCTCACAGAAAAC
TAAAATTAAGACGTGTTATGACGGCCAAAACTCTGGCAGAACTTCATGTTTGGGTATGAA
TTATGTTTATATAGATTAAAAATAATTATTTCTTAAGCTCCTTGAGTGTTTTTCTTTTCT
TAGTATTCATGGACTTAAAAATTTGCAGAAGTACAATTTCAGTTAATAGTATTTTCAGCC
CACTACCCTTAGCAAGTAACTGTCAGGTGTAGTTATGTGATTATTAAACAGTTTAGCTCC
CTTACAAATAAAGACAGAAAAATTGGCCAGTTTTCATGACACTAAAATACCATGACAAGA
AAACTTTAGTGAAGATTGGACCCAAAAAGAATATAAAAAGTTTCTAGTTTTGGGGGTTGT
ATTTAAATTTTTTAAAGTTATGTCATAATCTTGAGAACCTGGGTTCATTTGGAGGCGTGA
AATCTTGTTTATTGTTTAGGAGAATGATATTGATTTGATTTAATTATTAATAGATACTTT
TTAATGATTCCTTCTTAGGGCTTTTTCCCCTAAACAATATCTTATGTGCCCTTGAACTAT
TCCTTAAAGCAAGTATATTCACCTAAGAGTTAGTTATAAAGCACTGATGCTTTATGTATA
AACAACTTATTTATTTAGCCTAGCTATACTAGTCACCATCTGTTTCCTTTCTTATTCCTA
TGACCCCTCTGAATTTGTTGCCCAAATAAAAATCTAAATGACAGTTTTCTTAGGCTCATA
CATACCCGGACACAGTTATAAGTAGAAGAAGTTTTGATTTATCAGTCTGTCAAAAAAATT
TTTAAATGCTTGTTAAAGTTGTTTCTCTAGAAATGCTTTATCTTTCTTAGCATTCAAAGG
AATTACTATAGCAAAACAGTCAAAGGTAGGTAGGCTTATTGTTGAGCTGACAGCTAATTC
AACATGGAAAATACTGTTTTTCTTGCTTGGCACATT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

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               14-1085, gnl|bosTau2|chr29 (2205735-2204627)
               

               
               14-1085, gnl|Hg17|chr11 (89574258-89573155)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               14-1085, gnl|bosTau2|chr29 (2205735-2204627)
               

               
               14-1085, gnl|Hg17|chr11 (89574258-89573155)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               liv (0.292569)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               liv (0.292569)
               

               
               nmm (0.132802)
               

               
               kid (0.129735)
               

               
               tra (0.123092)

	14-1085, gnl\|bosTau2\|chr29 (2205735-2204627)
	14-1085, gnl\|Hg17\|chr11 (89574258-89573155)