Non-Coding RNA Search

Ss1.1-Pig4-TMW8044G04.3

Sequence:


               
               ATTTTCTAGCTTTCTATTTAATATTTCTCAACATGCCTGGGGATGCCCCCATTGCTCCTG
TTGAAGGAACGGATAGCAGTGCCTACATCAAACCCAGCAAAGAAGTTGCCATCTTCTGCA
GCTTCCTGTTGGGTCTTGGAGACAGCTGCTTCAACACCCAGCTGCTCAGTATCTTAGGTT
TTCTCTATTCTGAAGACAGTGCACCAGCTTTTGCAGTCTTTAAATTTGTACAGTCCATTT
GTGCAGCCGTGGCGTTTTTCTACAGTAACTACCTTCTCCTTCATTGGCAACTCCTGGTCA
TGGTGCTGTTTGGGTTTTTTGGAACGATTTCCTTCTTCACCGTGGAGTGGGAAGCCGCTG
CCATTGTGGCCCGGGGCTCCGACTACCGAAGCATCTGACGGAGGAGGAGCCCGGGGGAGG
CGGCCGAGACCGCGGGCCCGAGCGCCGGGGCTGGAGGCGGAGGCCGGCGTTCGTCTTCAC
CCCACTCGGGAGGGTGGTCCGGCCAGAAGGGCCGGCGCGGGACTGCGAAGTCTGCCAGAG
CTGGTCTTCAGGTTTGCAGGTGCTTGTTTCAGACGCCTCGAACAAGGGAGGCTAGTGCTG
TCGCTTGTCATTGTGCGAAGATGCCGGTTTTCAGTGCATCTGTGTCTCAGTTCCTCGTGA
CCATGGCACAGAATGTCCGTGTTTCCTCTGCCCTCCTGTTCTCCTTGAAAAATCATGCTT
TGATCGAAACGTCCAGGCCCTGTGTCCTATAGAGACTCTGGCCGCGTGTGGCGGTAGGTT
ACTGGGTAATAGAGGCACCTGCCATCCCACCCGTGTCTGGAAGTGACATCTAAAGAAATT
GTTGGGAGTTCCCCTTGGTGGCACAGTGGGTTAAGGATCTGGCGTTGTCACTGCAGCGGC
GAGGGTTCAGTCCCTGGCCCGGGAACGCCCACGTGCCTTGGGCGCGGCCAAAAAAGAAAA
AAATAATAATAAATCATGCAACCCTGAAGTGGAATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTTCTAGCTTTCTATTTAATATTTCTCAACATGCCTGGGGATGCCCCCATTGCTCCTG
TTGAAGGAACGGATAGCAGTGCCTACATCAAACCCAGCAAAGAAGTTGCCATCTTCTGCA
GCTTCCTGTTGGGTCTTGGAGACAGCTGCTTCAACACCCAGCTGCTCAGTATCTTAGGTT
TTCTCTATTCTGAAGACAGTGCACCAGCTTTTGCAGTCTTTAAATTTGTACAGTCCATTT
GTGCAGCCGTGGCGTTTTTCTACAGTAACTACCTTCTCCTTCATTGGCAACTCCTGGTCA
TGGTGCTGTTTGGGTTTTTTGGAACGATTTCCTTCTTCACCGTGGAGTGGGAAGCCGCTG
CCATTGTGGCCCGGGGCTCCGACTACCGAAGCATCTGACGGAGGAGGAGCCCGGGGGAGG
CGGCCGAGACCGCGGGCCCGAGCGCCGGGGCTGGAGGCGGAGGCCGGCGTTCGTCTTCAC
CCCACTCGGGAGGGTGGTCCGGCCAGAAGGGCCGGCGCGGGACTGCGAAGTCTGCCAGAG
CTGGTCTTCAGGTTTGCAGGTGCTTGTTTCAGACGCCTCGAACAAGGGAGGCTAGTGCTG
TCGCTTGTCATTGTGCGAAGATGCCGGTTTTCAGTGCATCTGTGTCTCAGTTCCTCGTGA
CCATGGCACAGAATGTCCGTGTTTCCTCTGCCCTCCTGTTCTCCTTGAAAAATCATGCTT
TGATCGAAACGTCCAGGCCCTGTGTCCTATAGAGACTCTGGCCGCGTGTGGCGGTAGGTT
ACTGGGTAATAGAGGCACCTGCCATCCCACCCGTGTCTGGAAGTGACATCTAAAGAAATT
GTTGGGAGTTCCCCTTGGTGGCACAGTGGGTTAAGGATCTGGCGTTGTCACTGCAGCGGC
GAGGGTTCAGTCCCTGGCCCGGGAACGCCCACGTGCCTTGGGCGCGGCCAAAAAAGAAAA
AAATAATAATAAATCATGCAACCCTGAAGTGGAATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55726368|emb|CAH89954.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55726368|emb|CAH89954.1|

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               232-758, gnl|bosTau2|chr19 (49873583-49873057)
               

               
               232-758, gnl|Hg17|chr17 (72285863-72286394)
               

               
               232-758, gnl|Mm7|chr11 (116982825-116983273)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               232-758, gnl|bosTau2|chr19 (49873583-49873057)
               

               
               232-758, gnl|Hg17|chr17 (72285863-72286394)
               

               
               232-758, gnl|Mm7|chr11 (116982825-116983273)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               ece (0.45861)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               col (0.195008)
               

               
               cut (0.169924)
               

               
               pla (0.133672)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               jca (0.11396)
               

               
               cty (0.10408)

	232-758, gnl\|bosTau2\|chr19 (49873583-49873057)
	232-758, gnl\|Hg17\|chr17 (72285863-72286394)
	232-758, gnl\|Mm7\|chr11 (116982825-116983273)

	ece (0.45861)
	col (0.195008)
	cut (0.169924)
	pla (0.133672)
	eep (0.122564)
	cly (0.120642)
	jca (0.11396)
	cty (0.10408)