Non-Coding RNA Search

Ss1.1-Pig4-TMW8044G06.3

Sequence:


               
               CTTTCACGCCGCTGTGCAGCAAGTTGAAGTTAGAAGGAGCAATATGGGCAAACTCTAAAC
ATTCAAAATTGTTTTTCTTTTTTTAACCAACTCATTGTTTTTTTAAGAAAAAACAATGTG
TGAAATCAGTTTAGCGTGTCTGTACCATCAGGAACAGCTGAAAAGTCTAACATGGATGAG
ACAGCTTCACCACTAACGTTGCGGGCAATAAACACGTAATTTACTTACTAGCTGGGAGCT
GAACTGGCTGAGAAACACATGATTTGCTTCGAGTGTTGGGTTTTGTTGCCTTTTTCTTAA
TTGACGCAGAAAACTCCATCCAAGGCTGTGGAGTCGTGCCCGGCGCTGTCTGTCCTCACT
GTGGGAAGCCTGATGGGCCCTCGGGCTTGGTCTCACCACGCGTCAGGGTTTGTTTTTTTA
TACAGCACGTCTTTGACACTTTAAAGTGGGTTTGTGTGTGTGTGCGTGTGTGTGTGCGTG
TGTAAGGTTTTATGTTGCTGTTATTTATTTACAGACTTTATAAGGTTTTATGTATTTTTC
TTTCTTCCAGAGCTTCCTAAAAATTGATTAGCATCTGCACTGAAATATAATTAAACAGCA
AAGGCAAAAAAAGAATTGGAAGTTGTAAATTCCTGAGATCACTACAGTGACGATCATTCT
AGAAATCGTTGCGTATGTAGTAGCAGAGACCAAATAAATATGTTTCGGAGACAGCCTTTA
GCTTGGTTGATTTTGACAGCTGCTTTTTACCAAGAAAGGGCTCCAGGTGGTCAAGGTGCA
GACTTCCTCCCACCCTGGCAGGGAGATGCGGCACCTTCCACGCGGGAGCGGCAGCGGGTT
ATAGGTGGGCAAGGGGATTAACAGATGATGTATTTATTTGTTTTCATAGCTAAGTGGCTG
AAGCCCAGAGGCTTTCGGCGACAGAGTTGAAAGTGTGGTTTTTAGTTTTGTGAATGGATG
ATCACAAAGAAAAAGCCTTTTTTAAAAAGTCGGCAAAACGCTGAGACGCACTGTGGTATG
AAGCGCATTGCACATCCATAGCACTGAAGCATCAGTTTTCCAGTCCTGGGCTGAAGTTTT
TTTTTTTCCCCGTGGTTGTGTTGTTCTGATTTCACGTACACCAGAGTAACTGATTTTTTG
TTTTCTTGTGAAGTTAACACCAAATAAAAAATTTCGGAAAACCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTCACGCCGCTGTGCAGCAAGTTGAAGTTAGAAGGAGCAATATGGGCAAACTCTAAAC
ATTCAAAATTGTTTTTCTTTTTTTAACCAACTCATTGTTTTTTTAAGAAAAAACAATGTG
TGAAATCAGTTTAGCGTGTCTGTACCATCAGGAACAGCTGAAAAGTCTAACATGGATGAG
ACAGCTTCACCACTAACGTTGCGGGCAATAAACACGTAATTTACTTACTAGCTGGGAGCT
GAACTGGCTGAGAAACACATGATTTGCTTCGAGTGTTGGGTTTTGTTGCCTTTTTCTTAA
TTGACGCAGAAAACTCCATCCAAGGCTGTGGAGTCGTGCCCGGCGCTGTCTGTCCTCACT
GTGGGAAGCCTGATGGGCCCTCGGGCTTGGTCTCACCACGCGTCAGGGTTTGTTTTTTTA
TACAGCACGTCTTTGACACTTTAAAGTGGGTTTGTGTGTGTGTGCGTGTGTGTGTGCGTG
TGTAAGGTTTTATGTTGCTGTTATTTATTTACAGACTTTATAAGGTTTTATGTATTTTTC
TTTCTTCCAGAGCTTCCTAAAAATTGATTAGCATCTGCACTGAAATATAATTAAACAGCA
AAGGCAAAAAAAGAATTGGAAGTTGTAAATTCCTGAGATCACTACAGTGACGATCATTCT
AGAAATCGTTGCGTATGTAGTAGCAGAGACCAAATAAATATGTTTCGGAGACAGCCTTTA
GCTTGGTTGATTTTGACAGCTGCTTTTTACCAAGAAAGGGCTCCAGGTGGTCAAGGTGCA
GACTTCCTCCCACCCTGGCAGGGAGATGCGGCACCTTCCACGCGGGAGCGGCAGCGGGTT
ATAGGTGGGCAAGGGGATTAACAGATGATGTATTTATTTGTTTTCATAGCTAAGTGGCTG
AAGCCCAGAGGCTTTCGGCGACAGAGTTGAAAGTGTGGTTTTTAGTTTTGTGAATGGATG
ATCACAAAGAAAAAGCCTTTTTTAAAAAGTCGGCAAAACGCTGAGACGCACTGTGGTATG
AAGCGCATTGCACATCCATAGCACTGAAGCATCAGTTTTCCAGTCCTGGGCTGAAGTTTT
TTTTTTTCCCCGTGGTTGTGTTGTTCTGATTTCACGTACACCAGAGTAACTGATTTTTTG
TTTTCTTGTGAAGTTAACACCAAATAAAAAATTTCGGAAAACCAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               855-1012, - strand, RNAz p=0.9746

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               855-1012, - strand, RNAz p=0.9746

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               111-1174, gnl|bosTau2|chr6 (68953679-68954749)
               

               
               111-1174, gnl|Hg17|chr4 (7002038-7003160)
               

               
               111-1174, gnl|Mm7|chr5 (35664793-35663788)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               111-1174, gnl|bosTau2|chr6 (68953679-68954749)
               

               
               111-1174, gnl|Hg17|chr4 (7002038-7003160)
               

               
               111-1174, gnl|Mm7|chr5 (35664793-35663788)

Expressed library(ies): 20 entry(ies)

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Expressed library(ies): 20 entry(ies)

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               cbr (0.511902)
               

               
               pty (0.285429)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

Expressed library(ies): 20 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbr (0.511902)
               

               
               pty (0.285429)
               

               
               hea (0.204499)
               

               
               fli (0.202881)
               

               
               fcc (0.197785)
               

               
               aor (0.195274)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               eye (0.170503)
               

               
               cut (0.169924)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               csp (0.161186)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               bla (0.124347)
               

               
               cty (0.10408)

	111-1174, gnl\|bosTau2\|chr6 (68953679-68954749)
	111-1174, gnl\|Hg17\|chr4 (7002038-7003160)
	111-1174, gnl\|Mm7\|chr5 (35664793-35663788)

	cbr (0.511902)
	pty (0.285429)
	hea (0.204499)
	fli (0.202881)
	fcc (0.197785)
	aor (0.195274)
	ill (0.175593)
	sin (0.174948)
	eye (0.170503)
	cut (0.169924)
	cje (0.165235)
	nco (0.161734)
	csp (0.161186)
	ski (0.146735)
	liv (0.146284)
	spl (0.143184)
	che (0.136314)
	ute (0.132784)
	bla (0.124347)
	cty (0.10408)