Non-Coding RNA Search

Ss1.1-Pig4-TMW8044G13.5

Sequence:


               
               AACCAGCTCTCCAGCCAAGCAAATCCTCTACTCACCATGCTTCCTCCTGCCATTCATTTC
TATCTCATTCCCCTTGCATGCATCCTCATGAAAAGCTGTTTGGCTTTTAAAAATGATGCC
ACAGAAATCCTTTATTCACATGTGGTTAAACCTGTTCCAGCACACACCAGCAGCAACAGC
ACGATGAATCAAGCCAGAAATGGAGGCAGGCATTTCAGTAACACTGGACTGGATCGGAAC
ACTCGAGTTCAAGTAGGTTGCCGAGAACTGCGTTCCACCAAATACATCTCTGATGGCCAG
TGCACCAGCATCAGTCCTCTAAAGGAGCTGGTATGTGCTGGTGAGTGCTTGCCCCTACCA
GTGCTCCCCAACTGGATCGGAGGAGGCTATGGAACAAAGTACTGGAGCAGAAGGAGCTCC
CAGGAGTGGAGGTGTGTCAATGACAAAACGCGCACCCAGAGAATCCAGCTGCAGTGCCAA
GATGGCAGCACGCGCACCTACAAAATCACAGTGGTCACCGCCTGCAAGTGCAAGAGATAC
ACACGGCAGCACAATGAGTCCAGTCATAACTTCGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACCAGCTCTCCAGCCAAGCAAATCCTCTACTCACCATGCTTCCTCCTGCCATTCATTTC
TATCTCATTCCCCTTGCATGCATCCTCATGAAAAGCTGTTTGGCTTTTAAAAATGATGCC
ACAGAAATCCTTTATTCACATGTGGTTAAACCTGTTCCAGCACACACCAGCAGCAACAGC
ACGATGAATCAAGCCAGAAATGGAGGCAGGCATTTCAGTAACACTGGACTGGATCGGAAC
ACTCGAGTTCAAGTAGGTTGCCGAGAACTGCGTTCCACCAAATACATCTCTGATGGCCAG
TGCACCAGCATCAGTCCTCTAAAGGAGCTGGTATGTGCTGGTGAGTGCTTGCCCCTACCA
GTGCTCCCCAACTGGATCGGAGGAGGCTATGGAACAAAGTACTGGAGCAGAAGGAGCTCC
CAGGAGTGGAGGTGTGTCAATGACAAAACGCGCACCCAGAGAATCCAGCTGCAGTGCCAA
GATGGCAGCACGCGCACCTACAAAATCACAGTGGTCACCGCCTGCAAGTGCAAGAGATAC
ACACGGCAGCACAATGAGTCCAGTCATAACTTCGAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55628188|ref|XP_518980.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55628188|ref|XP_518980.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               1-120, - strand, RNAz p=0.526787
               

               
               281-400, + strand, RNAz p=0.654569

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-120, - strand, RNAz p=0.526787
               

               
               281-400, + strand, RNAz p=0.654569

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-241, gnl|bosTau2|chr4 (7844668-7844428)
               

               
               1-241, gnl|Hg17|chr7 (16278569-16278329)
               

               
               1-241, gnl|Mm7|chr12 (34153874-34154113)
               


               
               242-576, gnl|bosTau2|chr4 (7841920-7841586)
               

               
               242-576, gnl|Hg17|chr7 (16275828-16275494)
               

               
               242-576, gnl|Mm7|chr12 (34156647-34156981)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-241, gnl|bosTau2|chr4 (7844668-7844428)
               

               
               1-241, gnl|Hg17|chr7 (16278569-16278329)
               

               
               1-241, gnl|Mm7|chr12 (34153874-34154113)
               


               
               242-576, gnl|bosTau2|chr4 (7841920-7841586)
               

               
               242-576, gnl|Hg17|chr7 (16275828-16275494)
               

               
               242-576, gnl|Mm7|chr12 (34156647-34156981)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               nco (0.161734)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

Expressed library(ies): 3 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nco (0.161734)
               

               
               pla (0.133672)
               

               
               bla (0.124347)

	1-120, - strand, RNAz p=0.526787
	281-400, + strand, RNAz p=0.654569

	1-241, gnl\|bosTau2\|chr4 (7844668-7844428)
	1-241, gnl\|Hg17\|chr7 (16278569-16278329)
	1-241, gnl\|Mm7\|chr12 (34153874-34154113)

	242-576, gnl\|bosTau2\|chr4 (7841920-7841586)
	242-576, gnl\|Hg17\|chr7 (16275828-16275494)
	242-576, gnl\|Mm7\|chr12 (34156647-34156981)