Non-Coding RNA Search

Ss1.1-Pig4-TMW8044G19.5

Sequence:


               
               GATCATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCTTAAGCTGTGGTACAACCACAT
CGCCTACATCCCCATCCAGATCGGCAACCTCACCAACCTCGAGCGCCTCTACCTGAACCG
CAACAAGATCGAGAAGATCCCCACCCAGCTCTTCTACTGCCGCAAGCTGCGCTACCTGGA
CCTCAGCCACAACAACCTGACCTTCCTCCCCGCCGACATCGGCCTCCTGCAGAACCTCCA
GAACCTGGCCGTCACGGCCAACCGGATCGAGGCGCTGCCACCGGAGCTCTTCCAGTGCCG
GAAGCTGCGGGCCCTGCACCTGGGCAACAACGTGCTGCAGTCGCTGCCCTCGCGGGTGGG
CGAGCTGACCAGCCTGACCCAGATTGAGCTGCGGGGCAACCGGCTGGAGTGCCTGCCCGT
GGAGCTGGGCGAGTGCCCCCTGCTCAAGCGCAGCGGCCTGGTGGTGGAGGAGGACCTGTT
CAACACTCTGCCCCCTGAGGTGAAGGAGCGGCTCTGGAGGGCCGACAAGGAGCAGGCCTG
AGCAAGGGCAGCGGGCGGGTGCCCAGCAGCGGGACCTCGGGGGAGGCCTCGGGCCCAGGA
GCCCCGGGACAACCAGGCCTGCCCCTTGGCTGGGGCAGGGGCCTGGGCTGGACTGAGCTG
GGCCGAGAGCAGACACGGCCCCTGAGGGGCTGGCCCCTTCTCCCTCTGGACACTCATGCC
CCCAGGGCAGGCGCCTGCGGGGAAGATCAGAGACTGTAGATCAGAGACTGTAGTCCGTCT
CCAGCACAGTATTTGGACAATCAGGCCCCAGAGGCCGAGCCGACGCCAGAGGTCCAGGGA
CCCCGACTCAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GATCATCAGCTTCCAGCACCTGCACCGCCTCACCTGCCTTAAGCTGTGGTACAACCACAT
CGCCTACATCCCCATCCAGATCGGCAACCTCACCAACCTCGAGCGCCTCTACCTGAACCG
CAACAAGATCGAGAAGATCCCCACCCAGCTCTTCTACTGCCGCAAGCTGCGCTACCTGGA
CCTCAGCCACAACAACCTGACCTTCCTCCCCGCCGACATCGGCCTCCTGCAGAACCTCCA
GAACCTGGCCGTCACGGCCAACCGGATCGAGGCGCTGCCACCGGAGCTCTTCCAGTGCCG
GAAGCTGCGGGCCCTGCACCTGGGCAACAACGTGCTGCAGTCGCTGCCCTCGCGGGTGGG
CGAGCTGACCAGCCTGACCCAGATTGAGCTGCGGGGCAACCGGCTGGAGTGCCTGCCCGT
GGAGCTGGGCGAGTGCCCCCTGCTCAAGCGCAGCGGCCTGGTGGTGGAGGAGGACCTGTT
CAACACTCTGCCCCCTGAGGTGAAGGAGCGGCTCTGGAGGGCCGACAAGGAGCAGGCCTG
AGCAAGGGCAGCGGGCGGGTGCCCAGCAGCGGGACCTCGGGGGAGGCCTCGGGCCCAGGA
GCCCCGGGACAACCAGGCCTGCCCCTTGGCTGGGGCAGGGGCCTGGGCTGGACTGAGCTG
GGCCGAGAGCAGACACGGCCCCTGAGGGGCTGGCCCCTTCTCCCTCTGGACACTCATGCC
CCCAGGGCAGGCGCCTGCGGGGAAGATCAGAGACTGTAGATCAGAGACTGTAGTCCGTCT
CCAGCACAGTATTTGGACAATCAGGCCCCAGAGGCCGAGCCGACGCCAGAGGTCCAGGGA
CCCCGACTCAGT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|7022303|dbj|BAA91549.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|7022303|dbj|BAA91549.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               677-789, - strand, RNAz p=0.593147

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               677-789, - strand, RNAz p=0.593147

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-255, gnl|bosTau2|chr3 (40541573-40541827)
               

               
               1-255, gnl|Hg17|chr1 (89762105-89762359)
               

               
               1-255, gnl|Mm7|chr5 (104658678-104658932)
               


               
               265-808, gnl|bosTau2|chr11 (78741090-78741640)
               

               
               265-808, gnl|Hg17|chr9 (128757928-128758473)
               

               
               265-808, gnl|Mm7|chr2 (30269158-30269663)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-255, gnl|bosTau2|chr3 (40541573-40541827)
               

               
               1-255, gnl|Hg17|chr1 (89762105-89762359)
               

               
               1-255, gnl|Mm7|chr5 (104658678-104658932)
               


               
               265-808, gnl|bosTau2|chr11 (78741090-78741640)
               

               
               265-808, gnl|Hg17|chr9 (128757928-128758473)
               

               
               265-808, gnl|Mm7|chr2 (30269158-30269663)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               mcp (0.170648)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               lnt (0.142308)

	1-255, gnl\|bosTau2\|chr3 (40541573-40541827)
	1-255, gnl\|Hg17\|chr1 (89762105-89762359)
	1-255, gnl\|Mm7\|chr5 (104658678-104658932)

	265-808, gnl\|bosTau2\|chr11 (78741090-78741640)
	265-808, gnl\|Hg17\|chr9 (128757928-128758473)
	265-808, gnl\|Mm7\|chr2 (30269158-30269663)