Ss1.1-Pig4-TMW8044H10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGGCCCGGGGTCGGGGGTTTTGCTGCTGCTGCTGTCGCTGTTTTAAGCCTGGCTGCTCT CGGCCTGGCTGCTGTCCAGCCTCCTCCGGGAAGATGTTCTACCATATCTCCCTGGAGCAC GAGATCCTGCTGCATCCGCGCTACTTCGGCCCCAACCTTCTTAACACCGTGAAACAAAAG CTCTTCACTGAAGTGGAGGGGACCTGCACCGGCAAGTATGGCTTTGTAATTGCTGTCACC ACCATTGACAATATCGGTGCTGGTGTGATCCAGCCAGGCCGAGGCTTTGTCCTTTATCCA GTTAAGTACAAGGCCATCGTTTTCCGGCCCTTTAAAGGGGAGGTCGTGGATGCTGTTGTC ACTCAAGTCAACAAGGTCGGACTCTTCACAGAAATTGGGCCCATGTCCTGCTTCATCTCT CGACATTCCATCCCATCAGAGATGGAATTTGATCCTAATTCCAACCCACCATGTTACAAG ACAATGGATGAGGACATTGTGATTCAGCAGGATGATGAGATTCGCCTGAAGATTGTTGGG ACCCGTGTGGACAAGAATGACATCTTTGCTATTGGCTCCCTGATGGATGATTACTTGGGG CTTGTGAGCTGAGCACCAGGCTTTCCTACCTTGTTTGGTCCTTATCGAGGAGGTGTGACT GCCACACTTCCCATGTTGTCCAGAGGCCCAGTCTTGGTGCTGTGGGGGAGGCAAGGTAGG TTCCTTGTCCTCAGAAGACATTGGGTGCTTCTTGTGGCTTAGCAGCCACTCCCGGATTTT TGACTGTATTTCGTAACCATAAAAAGTCCTTGATTCTCAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGGCCCGGGGTCGGGGGTTTTGCTGCTGCTGCTGTCGCTGTTTTAAGCCTGGCTGCTCT CGGCCTGGCTGCTGTCCAGCCTCCTCCGGGAAGATGTTCTACCATATCTCCCTGGAGCAC GAGATCCTGCTGCATCCGCGCTACTTCGGCCCCAACCTTCTTAACACCGTGAAACAAAAG CTCTTCACTGAAGTGGAGGGGACCTGCACCGGCAAGTATGGCTTTGTAATTGCTGTCACC ACCATTGACAATATCGGTGCTGGTGTGATCCAGCCAGGCCGAGGCTTTGTCCTTTATCCA GTTAAGTACAAGGCCATCGTTTTCCGGCCCTTTAAAGGGGAGGTCGTGGATGCTGTTGTC ACTCAAGTCAACAAGGTCGGACTCTTCACAGAAATTGGGCCCATGTCCTGCTTCATCTCT CGACATTCCATCCCATCAGAGATGGAATTTGATCCTAATTCCAACCCACCATGTTACAAG ACAATGGATGAGGACATTGTGATTCAGCAGGATGATGAGATTCGCCTGAAGATTGTTGGG ACCCGTGTGGACAAGAATGACATCTTTGCTATTGGCTCCCTGATGGATGATTACTTGGGG CTTGTGAGCTGAGCACCAGGCTTTCCTACCTTGTTTGGTCCTTATCGAGGAGGTGTGACT GCCACACTTCCCATGTTGTCCAGAGGCCCAGTCTTGGTGCTGTGGGGGAGGCAAGGTAGG TTCCTTGTCCTCAGAAGACATTGGGTGCTTCTTGTGGCTTAGCAGCCACTCCCGGATTTT TGACTGTATTTCGTAACCATAAAAAGTCCTTGATTCTCAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 212-330, + strand, RNAz p=0.864793 | |
| 643-734, - strand, RNAz p=0.547121 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 212-330, + strand, RNAz p=0.864793 | |
| 643-734, - strand, RNAz p=0.547121 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 212-391, gnl|bosTau2|chr29 (32683222-32683043) | |
| 212-391, gnl|canFam2|chr18 (56945265-56945114) | |
| 212-391, gnl|danRer3|chr14 (26418133-26418255) | |
| 212-391, gnl|dasNov1|scaffold_32378 (40682-40531) | |
| 212-391, gnl|echTel1|scaffold_179658 (2619-2761) | |
| 212-391, gnl|fr1|chrUn (128436669-128436794) | |
| 212-391, gnl|hg17|chr11 (62286884-62287035) | |
| 212-391, gnl|Hg17|chr11 (62286911-62287090) | |
| 212-391, gnl|loxAfr1|scaffold_34890 (10787-10640) | |
| 212-391, gnl|mm7|chr19 (8477586-8477439) | |
| 212-391, gnl|Mm7|chr19 (8477561-8477380) | |
| 212-391, gnl|monDom2|scaffold_150 (1098321-1098473) | |
| 212-391, gnl|oryCun1|scaffold_205628 (50481-50330) | |
| 212-391, gnl|panTro1|chr9 (63281935-63282086) | |
| 212-391, gnl|rheMac2|chr14 (11326229-11326078) | |
| 212-391, gnl|rn3|chr1 (211623244-211623094) | |
| 212-391, gnl|xenTro1|scaffold_568 (189764-189912) | |
| 598-819, gnl|bosTau2|chr29 (32681701-32681484) | |
| 598-819, gnl|canFam2|chr18 (56943665-56943300) | |
| 598-819, gnl|dasNov1|scaffold_87291 (34492-34857) | |
| 598-819, gnl|echTel1|scaffold_179658 (4354-4694) | |
| 598-819, gnl|hg17|chr11 (62290391-62290757) | |
| 598-819, gnl|Hg17|chr11 (62290541-62290758) | |
| 598-819, gnl|loxAfr1|scaffold_34890 (9140-8796) | |
| 598-819, gnl|mm7|chr19 (8473719-8473341) | |
| 598-819, gnl|Mm7|chr19 (8473567-8473338) | |
| 598-819, gnl|monDom2|scaffold_150 (1099304-1099688) | |
| 598-819, gnl|oryCun1|scaffold_205628 (48340-47994) | |
| 598-819, gnl|panTro1|chr9 (63285433-63285800) | |
| 598-819, gnl|rheMac2|chr14 (11322893-11322524) | |
| 598-819, gnl|rn3|chr1 (211621186-211620802) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 212-391, gnl|bosTau2|chr29 (32683222-32683043) | |
| 212-391, gnl|canFam2|chr18 (56945265-56945114) | |
| 212-391, gnl|danRer3|chr14 (26418133-26418255) | |
| 212-391, gnl|dasNov1|scaffold_32378 (40682-40531) | |
| 212-391, gnl|echTel1|scaffold_179658 (2619-2761) | |
| 212-391, gnl|fr1|chrUn (128436669-128436794) | |
| 212-391, gnl|hg17|chr11 (62286884-62287035) | |
| 212-391, gnl|Hg17|chr11 (62286911-62287090) | |
| 212-391, gnl|loxAfr1|scaffold_34890 (10787-10640) | |
| 212-391, gnl|mm7|chr19 (8477586-8477439) | |
| 212-391, gnl|Mm7|chr19 (8477561-8477380) | |
| 212-391, gnl|monDom2|scaffold_150 (1098321-1098473) | |
| 212-391, gnl|oryCun1|scaffold_205628 (50481-50330) | |
| 212-391, gnl|panTro1|chr9 (63281935-63282086) | |
| 212-391, gnl|rheMac2|chr14 (11326229-11326078) | |
| 212-391, gnl|rn3|chr1 (211623244-211623094) | |
| 212-391, gnl|xenTro1|scaffold_568 (189764-189912) | |
| 598-819, gnl|bosTau2|chr29 (32681701-32681484) | |
| 598-819, gnl|canFam2|chr18 (56943665-56943300) | |
| 598-819, gnl|dasNov1|scaffold_87291 (34492-34857) | |
| 598-819, gnl|echTel1|scaffold_179658 (4354-4694) | |
| 598-819, gnl|hg17|chr11 (62290391-62290757) | |
| 598-819, gnl|Hg17|chr11 (62290541-62290758) | |
| 598-819, gnl|loxAfr1|scaffold_34890 (9140-8796) | |
| 598-819, gnl|mm7|chr19 (8473719-8473341) | |
| 598-819, gnl|Mm7|chr19 (8473567-8473338) | |
| 598-819, gnl|monDom2|scaffold_150 (1099304-1099688) | |
| 598-819, gnl|oryCun1|scaffold_205628 (48340-47994) | |
| 598-819, gnl|panTro1|chr9 (63285433-63285800) | |
| 598-819, gnl|rheMac2|chr14 (11322893-11322524) | |
| 598-819, gnl|rn3|chr1 (211621186-211620802) |
| Expressed library(ies): 40 entry(ies) | More info |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
| cov (0.528611) | |
| eye (0.511509) | |
| cut (0.509771) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| csp (0.322373) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eje (0.197668) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) |
| Expressed library(ies): 40 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| eye (0.511509) | |
| cut (0.509771) | |
| elu (0.385356) | |
| nlu (0.383362) | |
| fty (0.351679) | |
| csp (0.322373) | |
| cga (0.279096) | |
| fce (0.271592) | |
| pla (0.267344) | |
| cly (0.241284) | |
| eru (0.240096) | |
| pgl (0.236967) | |
| ebs (0.236602) | |
| ecc (0.23007) | |
| ece (0.229305) | |
| nms (0.213858) | |
| eje (0.197668) | |
| col (0.195008) | |
| ldo (0.194005) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| cje (0.165235) | |
| nco (0.161734) | |
| cli (0.152812) | |
| cag (0.151194) | |
| lun (0.150489) | |
| spl (0.143184) | |
| lnt (0.142308) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ute (0.132784) | |
| ret (0.128733) | |
| tra (0.123092) | |
| med (0.116252) | |
| jca (0.11396) |