Non-Coding RNA Search

Ss1.1-Pig4-TMW8044H15.3

Sequence:


               
               CCTGAGTGTCCTGGACCCCCCAGAACCACGCTCACCATCCAGGTGCTGACTGCACAGCAG
CTGCCCAAGCTGAACGCCGAGAAGCCAAACTCCATTGTGGACCCCCTGGTGCGCATCGAG
ATCCACGGGGTGACCTCAGACTGTGCCCGCAAGGAGACCAACTATGTGCTCAACAACGGC
TTCAACCCCCGCTGGGGGCAGACCCTGCAGTTCCAGCTGCGGGCTCCGGAGCTGGCGCTG
GTCCGGTTCGTGGTCGAGGATTATGACACCACCTCCCCCAATGACTTTGTGGGCCAGTTT
ACACTGCCTCTCAACAGCCTGAAGCAAGGGTACCGCCACATCCACCTGCTTTCTAAGGAC
GGGGCCTCGCTGTCACCAGCCACGCTCTTTGTCCACATCTGCATCCAGGGCTCCTGACGA
CACAGCTGACCCTCCCTGGGGTTCTGCAGGTGCCAGTCCACCTCCCGTGGCGGAGGCCCT
CTCCTGCTCTGGAGCGGAGGGGTGATGGGAGTGCCAGCCCCTCCAGCCTACCTGCTTAGC
CTGCTCGCCAGCCCCTGGTCTCGGCGGGATGCGGAGGGCTGCCTCGGCCCCTCCTGAAGC
ACAGGCAGGTGATCTTTTCTCTGGGCCGTGAGATGGTCCAGCCCACCTGTCCTCATGGCT
TATGGAGAGCCAGGTCCATGGCTGCCTGGAGACCCGGAGCAGGTCACGGGAACCCGCGGC
CGCCCTCTGCCACAAGGAGTCCAGCCACCCCCTAAAGCCTTCCTTCCCCCTCCAGGCTTT
CCTAGGCCCCTCCCTCCAGCTCTTGAATCTGAGCTCCCTTCCCTTGTTAAAGCAAGCAGG
GAGTGGGGAAGCTCAGAGCCCTGGGGAAACCTAGGAGCAGGTTTTTAATCTGTGTCATAG
AAGAGCCCTGGAGAGGACAGTAGAGCAAAATAAAGAGGCAAGTTTAGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTGAGTGTCCTGGACCCCCCAGAACCACGCTCACCATCCAGGTGCTGACTGCACAGCAG
CTGCCCAAGCTGAACGCCGAGAAGCCAAACTCCATTGTGGACCCCCTGGTGCGCATCGAG
ATCCACGGGGTGACCTCAGACTGTGCCCGCAAGGAGACCAACTATGTGCTCAACAACGGC
TTCAACCCCCGCTGGGGGCAGACCCTGCAGTTCCAGCTGCGGGCTCCGGAGCTGGCGCTG
GTCCGGTTCGTGGTCGAGGATTATGACACCACCTCCCCCAATGACTTTGTGGGCCAGTTT
ACACTGCCTCTCAACAGCCTGAAGCAAGGGTACCGCCACATCCACCTGCTTTCTAAGGAC
GGGGCCTCGCTGTCACCAGCCACGCTCTTTGTCCACATCTGCATCCAGGGCTCCTGACGA
CACAGCTGACCCTCCCTGGGGTTCTGCAGGTGCCAGTCCACCTCCCGTGGCGGAGGCCCT
CTCCTGCTCTGGAGCGGAGGGGTGATGGGAGTGCCAGCCCCTCCAGCCTACCTGCTTAGC
CTGCTCGCCAGCCCCTGGTCTCGGCGGGATGCGGAGGGCTGCCTCGGCCCCTCCTGAAGC
ACAGGCAGGTGATCTTTTCTCTGGGCCGTGAGATGGTCCAGCCCACCTGTCCTCATGGCT
TATGGAGAGCCAGGTCCATGGCTGCCTGGAGACCCGGAGCAGGTCACGGGAACCCGCGGC
CGCCCTCTGCCACAAGGAGTCCAGCCACCCCCTAAAGCCTTCCTTCCCCCTCCAGGCTTT
CCTAGGCCCCTCCCTCCAGCTCTTGAATCTGAGCTCCCTTCCCTTGTTAAAGCAAGCAGG
GAGTGGGGAAGCTCAGAGCCCTGGGGAAACCTAGGAGCAGGTTTTTAATCTGTGTCATAG
AAGAGCCCTGGAGAGGACAGTAGAGCAAAATAAAGAGGCAAGTTTAGG

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               31-179, gnl|bosTau2|chr19 (37232474-37232622)
               

               
               31-179, gnl|Hg17|chr17 (40546163-40546015)
               

               
               31-179, gnl|Mm7|chr11 (103180443-103180295)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               31-179, gnl|bosTau2|chr19 (37232474-37232622)
               

               
               31-179, gnl|Hg17|chr17 (40546163-40546015)
               

               
               31-179, gnl|Mm7|chr11 (103180443-103180295)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

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               nms (0.213858)
               

               
               mas (0.210305)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               mas (0.210305)
               

               
               pla (0.133672)
               

               
               cov (0.132153)
               

               
               ese (0.126502)
               

               
               jca (0.11396)

	31-179, gnl\|bosTau2\|chr19 (37232474-37232622)
	31-179, gnl\|Hg17\|chr17 (40546163-40546015)
	31-179, gnl\|Mm7\|chr11 (103180443-103180295)

	nms (0.213858)
	mas (0.210305)
	pla (0.133672)
	cov (0.132153)
	ese (0.126502)
	jca (0.11396)