Non-Coding RNA Search

Ss1.1-Pig4-TMW8044H16.3

Sequence:


               
               CTTAAAAGCTTTTGTTATGAACAAAGCAAGATAGCCAAAAATTCATGGAAGTAATAAGGT
ATATTAATTACACTGCTCTTAAATGTATATGGGCATTTTTGGCAGCATATAACTTGAAGA
GACTTAAATTGGAAGGGTTTCTGTAAAAAATTATGGCAAAATGTGGCTGATACATAAAGT
TAACCTCAGGGAGTTACCTTTAGGATCCAAATTTGTAATCACTTTAACCAGAAGCCCTAA
CACAAATTTATGGCTTGTTAAAAATACGGAAGATAGAAATTGTTAAAACCGCATTCTACA
TTTAGATTGCGGCTGTTCACTAGTTTCTGAAATTGTAAGTCCCATTTGTCAGTCTGTCTT
GCATCATCAGTTGATGATACTGAAAACAGTCATAAAAACTTTGACTTGTGTATGATTACA
AATGTTTGCTTACTAATATTTGGTGATAATTCAAGGAACATACCTAGGGATAAGTTGTTT
TTTATGCTTACAGAAATATTTAACACTGATTCTCAGTTCATTGTGGATTACTTACCTCCA
TGTCTTAAGCAGAAAGATAAAAACAAAGATATATTAGCTGGAGAAATTTTTTTTTAATTT
TACAAGATTTAGATACCTTTTGTCTACTGTTTCTATACTTTTTATAGTTTCTTAAAAAAG
ATCATGTGATCAGTAGATGGCATCTCCAGGTTTTTTCACCCATGTATGGATAGATAGGAA
GCTCTGGTTGCTTTTTGTTGTAGAGTCATGGTTCATGTTCTTACAGTGCTGCTTTATCAG
GAATGGTGTTAATCATAGCAATTTCCAAAATAACACACATCTGATTCCAGACCCACTGAC
TCATATTTCCATTCCTGGTTACATAAGAACCACTGGTTTAGAATTTTGTCTTAATGTGCT
TTTATTTTCAGAATCCTGAACATGATTTAGTTGTCAGATCTAGTTGGTGGTAATGTCTTC
CAGGTTGTATATTTTTGTACTAGACTGCTGCCTTCTGGTTTCCTCTTTTTCTTTTAAGAA
TATGAAAGATTTTTGTAATTAAAGTAGCTGAAGAAAAACTGGGTTGGAGTATATTTTTAC
CAAAATCTGATAGTGTTGAATTAAATTTTATGTCCACAAAAGCTTTTTTCATCCTGTTTT
ATTCATTGGATACCTCACAAGAATTTAGTTCTACAGCATACTTGTGAGGTTCTGAGAAAA
GACATTGAAAATAAGGTCTTTTGATAAACCTAAATAACTGCTTAATTTTGTTCATGCAAC
TTTTCCTGTATTGGGACTGTAGAAATTTATAATACAGTATTCTTGTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTAAAAGCTTTTGTTATGAACAAAGCAAGATAGCCAAAAATTCATGGAAGTAATAAGGT
ATATTAATTACACTGCTCTTAAATGTATATGGGCATTTTTGGCAGCATATAACTTGAAGA
GACTTAAATTGGAAGGGTTTCTGTAAAAAATTATGGCAAAATGTGGCTGATACATAAAGT
TAACCTCAGGGAGTTACCTTTAGGATCCAAATTTGTAATCACTTTAACCAGAAGCCCTAA
CACAAATTTATGGCTTGTTAAAAATACGGAAGATAGAAATTGTTAAAACCGCATTCTACA
TTTAGATTGCGGCTGTTCACTAGTTTCTGAAATTGTAAGTCCCATTTGTCAGTCTGTCTT
GCATCATCAGTTGATGATACTGAAAACAGTCATAAAAACTTTGACTTGTGTATGATTACA
AATGTTTGCTTACTAATATTTGGTGATAATTCAAGGAACATACCTAGGGATAAGTTGTTT
TTTATGCTTACAGAAATATTTAACACTGATTCTCAGTTCATTGTGGATTACTTACCTCCA
TGTCTTAAGCAGAAAGATAAAAACAAAGATATATTAGCTGGAGAAATTTTTTTTTAATTT
TACAAGATTTAGATACCTTTTGTCTACTGTTTCTATACTTTTTATAGTTTCTTAAAAAAG
ATCATGTGATCAGTAGATGGCATCTCCAGGTTTTTTCACCCATGTATGGATAGATAGGAA
GCTCTGGTTGCTTTTTGTTGTAGAGTCATGGTTCATGTTCTTACAGTGCTGCTTTATCAG
GAATGGTGTTAATCATAGCAATTTCCAAAATAACACACATCTGATTCCAGACCCACTGAC
TCATATTTCCATTCCTGGTTACATAAGAACCACTGGTTTAGAATTTTGTCTTAATGTGCT
TTTATTTTCAGAATCCTGAACATGATTTAGTTGTCAGATCTAGTTGGTGGTAATGTCTTC
CAGGTTGTATATTTTTGTACTAGACTGCTGCCTTCTGGTTTCCTCTTTTTCTTTTAAGAA
TATGAAAGATTTTTGTAATTAAAGTAGCTGAAGAAAAACTGGGTTGGAGTATATTTTTAC
CAAAATCTGATAGTGTTGAATTAAATTTTATGTCCACAAAAGCTTTTTTCATCCTGTTTT
ATTCATTGGATACCTCACAAGAATTTAGTTCTACAGCATACTTGTGAGGTTCTGAGAAAA
GACATTGAAAATAAGGTCTTTTGATAAACCTAAATAACTGCTTAATTTTGTTCATGCAAC
TTTTCCTGTATTGGGACTGTAGAAATTTATAATACAGTATTCTTGTCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               894-1010, + strand, RNAz p=0.639884

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               894-1010, + strand, RNAz p=0.639884

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               1-573, gnl|bosTau2|chr23 (9773031-9773651)
               

               
               1-573, gnl|Hg17|chr6 (36679484-36680307)
               


               
               825-1301, gnl|bosTau2|chr23 (9773831-9774308)
               

               
               825-1301, gnl|Hg17|chr6 (36680525-36681345)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-573, gnl|bosTau2|chr23 (9773031-9773651)
               

               
               1-573, gnl|Hg17|chr6 (36679484-36680307)
               


               
               825-1301, gnl|bosTau2|chr23 (9773831-9774308)
               

               
               825-1301, gnl|Hg17|chr6 (36680525-36681345)

Expressed library(ies): 11 entry(ies)

More info

Expressed library(ies): 11 entry(ies)

Help | Less info


               
               lin (0.436808)
               

               
               ese (0.253004)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lin (0.436808)
               

               
               ese (0.253004)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               mga (0.160205)
               

               
               isp (0.150376)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               spc (0.113366)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	1-573, gnl\|bosTau2\|chr23 (9773031-9773651)
	1-573, gnl\|Hg17\|chr6 (36679484-36680307)

	825-1301, gnl\|bosTau2\|chr23 (9773831-9774308)
	825-1301, gnl\|Hg17\|chr6 (36680525-36681345)

	lin (0.436808)
	ese (0.253004)
	ton (0.1755)
	fbs (0.175346)
	mga (0.160205)
	isp (0.150376)
	ret (0.128733)
	thg (0.126791)
	spc (0.113366)
	jej (0.0989218)
	eje (0.0988338)