Non-Coding RNA Search

Ss1.1-Pig4-TMW8044H19.5

Sequence:


               
               TGGGAGGAGCGGTGGCCCTGGTGAAGGGGCTGCTGGCCGGCAACGTCTTCGACTGGGGAG
CGAAAGCCGTCTCCGAGTAGTGTCCTTGAATCCGATCCCCAGTTTGGGTTCGAGGAGGCG
AAGAAGAAGCTGCAAGAGCGACCCTGGCTTGTGGACTCCTACAGCAAGTGGCTGCAGAGA
CTGAAGGGGCCCCCTCACAAATGTGCCTTAATTTTCGCAGATAACAGTGGAGTAGACGTC
ATTTTGGGAGTCTTCCCCTTTGTCAGGGAGCTTCTCTCTAGAGGGACGGAGGTGATCCTG
GCGTGCAACTCGGGCCCCGCCTTGAATGACGTGACCTACAGCGAGTCCCTCATCGTGGCC
GAGCGCATCGCAGCCATGGACCCTGTCGTCCACTCAGCGCTACGGGAAGAGAGGCTACTG
CTGATGCAGACGGGCTCCAGCTCCCCATGCCTGGACCTCAGCCGCCTGGACAAGGGGCTG
GCTGTGCTGGTGCGGGAGCGCGGCGCCGACCTGGTGGTCATTGAGGGCATGGGCCGAGCC
GTCCACACCAACTACCACGCGGCCCTGTGCTGCGAGAGCCTCAAGCTGGCCGTCATCAAG
AACTCGTGGCTGGCCGAGCGGCTGGGCGGCCGCCTCTTCAGCGTCATCTTCAAGTACGAG
GTCCCGGCCGAGTGAGGCGCCGCCCCGCTCGCCGCTCGTCAGGCGCGCGTCTCAACGACA
GCAGGGACACCGCGCGCACATCGGAGTATCTATGTCGTGCTTCTGTGCCTCAGAGCTGGG
GGCATCCAGACGCGGGCACGGCGCCCGTGGCCTTGGGTCGGGCTTCTTTAAGGCTGCCGT
GCTCGTCGGGGGGAGACAGCGTCTGCTCCCTGAGACGCGCGTGTCGGAGTATATTTAACT
GTTAAATAATCTTTTATATATATATATATACATATATATATAAATATAAATATATACATA
TATGCCTCTGACAGAGGATGCCGGAGCCTCGGGGCGCAAACCAAATAGAGTTTCCAGAGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGAGGAGCGGTGGCCCTGGTGAAGGGGCTGCTGGCCGGCAACGTCTTCGACTGGGGAG
CGAAAGCCGTCTCCGAGTAGTGTCCTTGAATCCGATCCCCAGTTTGGGTTCGAGGAGGCG
AAGAAGAAGCTGCAAGAGCGACCCTGGCTTGTGGACTCCTACAGCAAGTGGCTGCAGAGA
CTGAAGGGGCCCCCTCACAAATGTGCCTTAATTTTCGCAGATAACAGTGGAGTAGACGTC
ATTTTGGGAGTCTTCCCCTTTGTCAGGGAGCTTCTCTCTAGAGGGACGGAGGTGATCCTG
GCGTGCAACTCGGGCCCCGCCTTGAATGACGTGACCTACAGCGAGTCCCTCATCGTGGCC
GAGCGCATCGCAGCCATGGACCCTGTCGTCCACTCAGCGCTACGGGAAGAGAGGCTACTG
CTGATGCAGACGGGCTCCAGCTCCCCATGCCTGGACCTCAGCCGCCTGGACAAGGGGCTG
GCTGTGCTGGTGCGGGAGCGCGGCGCCGACCTGGTGGTCATTGAGGGCATGGGCCGAGCC
GTCCACACCAACTACCACGCGGCCCTGTGCTGCGAGAGCCTCAAGCTGGCCGTCATCAAG
AACTCGTGGCTGGCCGAGCGGCTGGGCGGCCGCCTCTTCAGCGTCATCTTCAAGTACGAG
GTCCCGGCCGAGTGAGGCGCCGCCCCGCTCGCCGCTCGTCAGGCGCGCGTCTCAACGACA
GCAGGGACACCGCGCGCACATCGGAGTATCTATGTCGTGCTTCTGTGCCTCAGAGCTGGG
GGCATCCAGACGCGGGCACGGCGCCCGTGGCCTTGGGTCGGGCTTCTTTAAGGCTGCCGT
GCTCGTCGGGGGGAGACAGCGTCTGCTCCCTGAGACGCGCGTGTCGGAGTATATTTAACT
GTTAAATAATCTTTTATATATATATATATACATATATATATAAATATAAATATATACATA
TATGCCTCTGACAGAGGATGCCGGAGCCTCGGGGCGCAAACCAAATAGAGTTTCCAGAGT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

Help | Less info


               
               gi|50759185|ref|XP_417556.1|

Coded protein: 1 entry(ies)

Help | Less info

Protein identifier


               
               gi|50759185|ref|XP_417556.1|

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               185-275, + strand, RNAz p=0.989247

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               185-275, + strand, RNAz p=0.989247

Aligned organism(s): 20 entry(ies)

More info

Aligned organism(s): 20 entry(ies)

Help | Less info


               
               185-295, gnl|bosTau2|chr16 (36465057-36465167)
               

               
               185-295, gnl|canFam2|chr5 (60375152-60375308)
               

               
               185-295, gnl|danRer3|chrNA (217901754-217901617)
               

               
               185-295, gnl|echTel1|scaffold_298685 (971-1128)
               

               
               185-295, gnl|fr1|chrUn (248360084-248360242)
               

               
               185-295, gnl|galGal2|chr21 (1350600-1350462)
               

               
               185-295, gnl|hg17|chr1 (2474274-2474430)
               

               
               185-295, gnl|Hg17|chr1 (2474385-2474275)
               

               
               185-295, gnl|mm7|chr4 (153968574-153968418)
               

               
               185-295, gnl|Mm7|chr4 (153968461-153968571)
               

               
               185-295, gnl|monDom2|scaffold_183 (724152-724308)
               

               
               185-295, gnl|oryCun1|scaffold_188980 (3684-3575)
               

               
               185-295, gnl|panTro1|chr1 (2394779-2394936)
               

               
               185-295, gnl|rheMac2|chr1 (5579618-5579774)
               

               
               185-295, gnl|rn3|chr5 (171792323-171792167)
               

               
               185-295, gnl|tetNig1|chrUn_random (17879161-17879018)
               

               
               185-295, gnl|xenTro1|scaffold_177 (302323-302203)
               


               
               460-1020, gnl|bosTau2|chr16 (36466385-36466944)
               

               
               460-1020, gnl|Hg17|chr1 (2472663-2472141)
               

               
               460-1020, gnl|Mm7|chr4 (153970035-153970521)

Aligned organism(s): 20 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               185-295, gnl|bosTau2|chr16 (36465057-36465167)
               

               
               185-295, gnl|canFam2|chr5 (60375152-60375308)
               

               
               185-295, gnl|danRer3|chrNA (217901754-217901617)
               

               
               185-295, gnl|echTel1|scaffold_298685 (971-1128)
               

               
               185-295, gnl|fr1|chrUn (248360084-248360242)
               

               
               185-295, gnl|galGal2|chr21 (1350600-1350462)
               

               
               185-295, gnl|hg17|chr1 (2474274-2474430)
               

               
               185-295, gnl|Hg17|chr1 (2474385-2474275)
               

               
               185-295, gnl|mm7|chr4 (153968574-153968418)
               

               
               185-295, gnl|Mm7|chr4 (153968461-153968571)
               

               
               185-295, gnl|monDom2|scaffold_183 (724152-724308)
               

               
               185-295, gnl|oryCun1|scaffold_188980 (3684-3575)
               

               
               185-295, gnl|panTro1|chr1 (2394779-2394936)
               

               
               185-295, gnl|rheMac2|chr1 (5579618-5579774)
               

               
               185-295, gnl|rn3|chr5 (171792323-171792167)
               

               
               185-295, gnl|tetNig1|chrUn_random (17879161-17879018)
               

               
               185-295, gnl|xenTro1|scaffold_177 (302323-302203)
               


               
               460-1020, gnl|bosTau2|chr16 (36466385-36466944)
               

               
               460-1020, gnl|Hg17|chr1 (2472663-2472141)
               

               
               460-1020, gnl|Mm7|chr4 (153970035-153970521)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               nep (0.183925)
               

               
               hlv (0.139256)
               

               
               nca (0.136874)
               

               
               pla (0.133672)
               

               
               ldo (0.0970026)

	185-295, gnl\|bosTau2\|chr16 (36465057-36465167)
	185-295, gnl\|canFam2\|chr5 (60375152-60375308)
	185-295, gnl\|danRer3\|chrNA (217901754-217901617)
	185-295, gnl\|echTel1\|scaffold_298685 (971-1128)
	185-295, gnl\|fr1\|chrUn (248360084-248360242)
	185-295, gnl\|galGal2\|chr21 (1350600-1350462)
	185-295, gnl\|hg17\|chr1 (2474274-2474430)
	185-295, gnl\|Hg17\|chr1 (2474385-2474275)
	185-295, gnl\|mm7\|chr4 (153968574-153968418)
	185-295, gnl\|Mm7\|chr4 (153968461-153968571)
	185-295, gnl\|monDom2\|scaffold_183 (724152-724308)
	185-295, gnl\|oryCun1\|scaffold_188980 (3684-3575)
	185-295, gnl\|panTro1\|chr1 (2394779-2394936)
	185-295, gnl\|rheMac2\|chr1 (5579618-5579774)
	185-295, gnl\|rn3\|chr5 (171792323-171792167)
	185-295, gnl\|tetNig1\|chrUn_random (17879161-17879018)
	185-295, gnl\|xenTro1\|scaffold_177 (302323-302203)

	460-1020, gnl\|bosTau2\|chr16 (36466385-36466944)
	460-1020, gnl\|Hg17\|chr1 (2472663-2472141)
	460-1020, gnl\|Mm7\|chr4 (153970035-153970521)

	ece (0.229305)
	nep (0.183925)
	hlv (0.139256)
	nca (0.136874)
	pla (0.133672)
	ldo (0.0970026)