Non-Coding RNA Search

Ss1.1-Pig4-TMW8044I10.3

Sequence:


               
               ACTTTGGGCTAGCTAGAATACTGAACCACGATACGAGTTTTGCAAAAACATTTGTTGGCA
CACCTTATTACATGTCTCCTGAACAAATGAATCGCATGTCCTACAATGAGAAATCGGATA
TCTGGTCCCTAGGTTGTTTGCTGTATGAACTGTGCGCACTAATGCCTCCGTTTACAGCTT
TCAACCAGAAAGAACTAGCTGGGAAGATCAGAGAAGGCAAATTCAGGCGAATTCCATATC
GTTACTCCGATGAATTAAATGACCTTATTACGAGGATGTTAAACTTAAAGGATTACCATC
GACCTTCTGTCGAAGAAATTCTTGAGAATCCTTTGATAGCAGACCTGGTTGCAGAAGAGC
AAAGAAATCCCGAGAGAAGAGGGCGACGGTCAGGGGAACCAGAAAAGCTGCAGGACTCCA
GCCCTGTGCTGAGTGAGCTGAAACTGAAGGAAATACACTTACAGGAGCGGGAGCGAGCTC
TCAAAGCCAGGGAAGAAAGCCTGGAGCAGAAGGAGCGAGAGCTTTGTGTTCGTGAGCGGC
TGGCAGAGAACAAACTGGCCAGGGCAGAAAGTCTGCTGAAGAATTACAGTCTGCTGAAGG
ACCAGAAGTTCCTGTCTCTGGCGGGCGGTCCAGAGCGTTTTGATCTTCCGTCCTCGGGAA
TGAAGAAGAAGGTTCACTTCAGCGGGGAGAGTAAGGAGAACGTCGCGAGGAGCGAGACTC
CTGAGAGTCAGCTCAGCTCCAAATCCAAGTGCAAAGACCTGAAGAGGAGGCTCCATGCTG
CTCAGCTGCGGGCGCAGGCCCTGGCAGACATTGAGAAAACGTACCAGCTGAAAAGCAGGC
AGATCCTGGGCATGCGCTAGCCTGGCCCAGAGACAGCGAGCGGCGAGCCGGGTCTAACAC
TGCCCGCCCTTCGAGGCTGGCATTCCCCTGCCGCGGCCTACACGCGTGCTGCCGTGAACC
GTGCTTTTTCTGTAGGAAGCCTGATGTTTCGGGGTCGCTTTTGCTGTTCCTCGGCGGCAG
GTGTGCCAGCGTCCACCCCATGCATTTGTCTTTCTTTTTCTAAGAAGGCTTTACAGACAG
AATGACGCTGTCTTGGCCAACTGGGCTTTTCATCCTCTGTGTGATTACTTCTGGAACCTT
CGATGTTATATTCTAAGTGTTGGGAATTGGGGGGGATAGTAGGAAAACATCTTTACTCAG
GAGCAGTGCTTACTGTGAAGTCTGAAGGACTGAGTGGTGTGCTTTACAGCTGTCCTGTCT
AGAGTGAAAATTTAAGTCTGGGTTTTTAAATGTTCTTGAGCTTAGAGAAAACCTGGTCGG
CCACTGATACGCTGGCATCTCGCGTGTAAACATCCCGTTGCTCTGGGGCGTGAATCTGTG
ACCTTCTGTGGAAGAGTTCATCTCTGTGATGTCTGTATGCTTTTTCCCTTTTTATTCTGT
GAACTGTCCTGTGCCACCTCTTTCTGACTAAATAAAAGAATTCTTTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTTTGGGCTAGCTAGAATACTGAACCACGATACGAGTTTTGCAAAAACATTTGTTGGCA
CACCTTATTACATGTCTCCTGAACAAATGAATCGCATGTCCTACAATGAGAAATCGGATA
TCTGGTCCCTAGGTTGTTTGCTGTATGAACTGTGCGCACTAATGCCTCCGTTTACAGCTT
TCAACCAGAAAGAACTAGCTGGGAAGATCAGAGAAGGCAAATTCAGGCGAATTCCATATC
GTTACTCCGATGAATTAAATGACCTTATTACGAGGATGTTAAACTTAAAGGATTACCATC
GACCTTCTGTCGAAGAAATTCTTGAGAATCCTTTGATAGCAGACCTGGTTGCAGAAGAGC
AAAGAAATCCCGAGAGAAGAGGGCGACGGTCAGGGGAACCAGAAAAGCTGCAGGACTCCA
GCCCTGTGCTGAGTGAGCTGAAACTGAAGGAAATACACTTACAGGAGCGGGAGCGAGCTC
TCAAAGCCAGGGAAGAAAGCCTGGAGCAGAAGGAGCGAGAGCTTTGTGTTCGTGAGCGGC
TGGCAGAGAACAAACTGGCCAGGGCAGAAAGTCTGCTGAAGAATTACAGTCTGCTGAAGG
ACCAGAAGTTCCTGTCTCTGGCGGGCGGTCCAGAGCGTTTTGATCTTCCGTCCTCGGGAA
TGAAGAAGAAGGTTCACTTCAGCGGGGAGAGTAAGGAGAACGTCGCGAGGAGCGAGACTC
CTGAGAGTCAGCTCAGCTCCAAATCCAAGTGCAAAGACCTGAAGAGGAGGCTCCATGCTG
CTCAGCTGCGGGCGCAGGCCCTGGCAGACATTGAGAAAACGTACCAGCTGAAAAGCAGGC
AGATCCTGGGCATGCGCTAGCCTGGCCCAGAGACAGCGAGCGGCGAGCCGGGTCTAACAC
TGCCCGCCCTTCGAGGCTGGCATTCCCCTGCCGCGGCCTACACGCGTGCTGCCGTGAACC
GTGCTTTTTCTGTAGGAAGCCTGATGTTTCGGGGTCGCTTTTGCTGTTCCTCGGCGGCAG
GTGTGCCAGCGTCCACCCCATGCATTTGTCTTTCTTTTTCTAAGAAGGCTTTACAGACAG
AATGACGCTGTCTTGGCCAACTGGGCTTTTCATCCTCTGTGTGATTACTTCTGGAACCTT
CGATGTTATATTCTAAGTGTTGGGAATTGGGGGGGATAGTAGGAAAACATCTTTACTCAG
GAGCAGTGCTTACTGTGAAGTCTGAAGGACTGAGTGGTGTGCTTTACAGCTGTCCTGTCT
AGAGTGAAAATTTAAGTCTGGGTTTTTAAATGTTCTTGAGCTTAGAGAAAACCTGGTCGG
CCACTGATACGCTGGCATCTCGCGTGTAAACATCCCGTTGCTCTGGGGCGTGAATCTGTG
ACCTTCTGTGGAAGAGTTCATCTCTGTGATGTCTGTATGCTTTTTCCCTTTTTATTCTGT
GAACTGTCCTGTGCCACCTCTTTCTGACTAAATAAAAGAATTCTTTAG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|57791147|gb|AAW56418.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|57791147|gb|AAW56418.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               365-512, + strand, RNAz p=0.863818

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               365-512, + strand, RNAz p=0.863818

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC065932, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC065932, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               289-512, gnl|bosTau2|chr16 (53795049-53795275)
               

               
               289-512, gnl|Hg17|chr1 (208231071-208230845)
               

               
               289-512, gnl|Mm7|chr1 (191380073-191380299)
               


               
               632-1264, gnl|bosTau2|chr16 (53799897-53800530)
               

               
               632-1264, gnl|Hg17|chr1 (208225391-208224762)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               289-512, gnl|bosTau2|chr16 (53795049-53795275)
               

               
               289-512, gnl|Hg17|chr1 (208231071-208230845)
               

               
               289-512, gnl|Mm7|chr1 (191380073-191380299)
               


               
               632-1264, gnl|bosTau2|chr16 (53799897-53800530)
               

               
               632-1264, gnl|Hg17|chr1 (208225391-208224762)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cte (0.29274)
               

               
               nbm (0.198649)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cte (0.29274)
               

               
               nbm (0.198649)
               

               
               cut (0.169924)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)

	289-512, gnl\|bosTau2\|chr16 (53795049-53795275)
	289-512, gnl\|Hg17\|chr1 (208231071-208230845)
	289-512, gnl\|Mm7\|chr1 (191380073-191380299)

	632-1264, gnl\|bosTau2\|chr16 (53799897-53800530)
	632-1264, gnl\|Hg17\|chr1 (208225391-208224762)

	cte (0.29274)
	nbm (0.198649)
	cut (0.169924)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)