Ss1.1-Pig4-TMW8044I13.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGCAGTGTGATTTGGAGGACGCCATCACTTTGCCGCTCTAAAGCTCCTGGTGCCGCGTG GGGTTTAGAGAGTTCCGCTGGGTGTGCGAGGACCGCAAGAGGAACACCAGGACCGCAGGT CTTCTCGCTCGAACCCACAATCAAGAGGCCTCAGTATGAATTCACAGCCGTGAAACTCTG ACGCCATCACTTTGCCGCTCTAAAGTTCAATTATGGGTCGACTTGATGGGAAGGTCATCA TCCTGACAGCCGCTGCTCAGGGGATCGGCCGGGCAGCTGCCTTGGCTTTTGCAAGAGAAG GTGCCAAAGTCATAGCCACAGATATCAATGAGTCCAAACTTCAGGAACTGGAAAACTACC CAGGTATTCAAACTCGGGTCCTTGATGTCACAAAGAAGAAACAAATTGATGAGTTCGCCA ATGACATTGAGAGGCTTGATGTTCTCTTTAATGTTGCTGGTTTCGTCCATCACGGAACCA TCCTGGACTGTGAGGAGAAAGACTGGGACTTCTCAATGAATCTCAACGTCCGCAGCATGT ACCTGATGATCAAGGCATTTCTTCCTAAAATGCTTGCTCAGAAATCTGGCAACATTATCA ACATGTCCTCTGTGGCTTCCAGCATCAAAGGAGTTGTGAACAGGTGTGTGTACAGTGCAA CCAAGGCAGCCGTAATTGGCCTCACAAAGTCCGTGGCTGCAGACTTCATCCAGCAAGGCA TTCGGTGCAACTGTGTGTGTCCAGGTACCGTTGATACCCCCTCTCTGCAAGAAAGAATAC AAGCTAGACCAAATCCTGAAGAGGCACTGAGCGATTTTCTAAAGAGACAGAAAACAGGAA GATTTGCAACCGCAGAAGAAGTAGCCCTGCTCTGCGTGTACTTGGCCTCTGATGAATCTG CCTACGTAACAGGTAATCCTGTTGTCATTGATGGAGGCTGGAGCTTGTGATTTCAGGATC TCCTTGCCTGGGAAGGCAGTCACTTCCTGTCCACAGTGAACCGGTTATGAAGAACAGTCA CCCATCCTCTCTGCTATCAATGGCATATTAATGAAAACAAGACCTTTTTGAGGATGTCGT TGCTCAGAGAATTCTGATTCTTTAAATATATTACTCTCTTTCTAATCTCTTCGGAAATCA TTGTATCTACAATCTAGGTGGGATAATGAACTTACTGCAAAAAGAATATTTTAAAAATAA ATTTCAATTTGTAAGCATATACAATTAAGATGTGAATATGAAGAAAAAAGGAATTTTTTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGCAGTGTGATTTGGAGGACGCCATCACTTTGCCGCTCTAAAGCTCCTGGTGCCGCGTG GGGTTTAGAGAGTTCCGCTGGGTGTGCGAGGACCGCAAGAGGAACACCAGGACCGCAGGT CTTCTCGCTCGAACCCACAATCAAGAGGCCTCAGTATGAATTCACAGCCGTGAAACTCTG ACGCCATCACTTTGCCGCTCTAAAGTTCAATTATGGGTCGACTTGATGGGAAGGTCATCA TCCTGACAGCCGCTGCTCAGGGGATCGGCCGGGCAGCTGCCTTGGCTTTTGCAAGAGAAG GTGCCAAAGTCATAGCCACAGATATCAATGAGTCCAAACTTCAGGAACTGGAAAACTACC CAGGTATTCAAACTCGGGTCCTTGATGTCACAAAGAAGAAACAAATTGATGAGTTCGCCA ATGACATTGAGAGGCTTGATGTTCTCTTTAATGTTGCTGGTTTCGTCCATCACGGAACCA TCCTGGACTGTGAGGAGAAAGACTGGGACTTCTCAATGAATCTCAACGTCCGCAGCATGT ACCTGATGATCAAGGCATTTCTTCCTAAAATGCTTGCTCAGAAATCTGGCAACATTATCA ACATGTCCTCTGTGGCTTCCAGCATCAAAGGAGTTGTGAACAGGTGTGTGTACAGTGCAA CCAAGGCAGCCGTAATTGGCCTCACAAAGTCCGTGGCTGCAGACTTCATCCAGCAAGGCA TTCGGTGCAACTGTGTGTGTCCAGGTACCGTTGATACCCCCTCTCTGCAAGAAAGAATAC AAGCTAGACCAAATCCTGAAGAGGCACTGAGCGATTTTCTAAAGAGACAGAAAACAGGAA GATTTGCAACCGCAGAAGAAGTAGCCCTGCTCTGCGTGTACTTGGCCTCTGATGAATCTG CCTACGTAACAGGTAATCCTGTTGTCATTGATGGAGGCTGGAGCTTGTGATTTCAGGATC TCCTTGCCTGGGAAGGCAGTCACTTCCTGTCCACAGTGAACCGGTTATGAAGAACAGTCA CCCATCCTCTCTGCTATCAATGGCATATTAATGAAAACAAGACCTTTTTGAGGATGTCGT TGCTCAGAGAATTCTGATTCTTTAAATATATTACTCTCTTTCTAATCTCTTCGGAAATCA TTGTATCTACAATCTAGGTGGGATAATGAACTTACTGCAAAAAGAATATTTTAAAAATAA ATTTCAATTTGTAAGCATATACAATTAAGATGTGAATATGAAGAAAAAAGGAATTTTTTA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | More info |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
| 460-568, gnl|bosTau2|chr6 (8355440-8355548) | |
| 460-568, gnl|canFam2|chr32 (27358005-27357898) | |
| 460-568, gnl|canFam2|chr32 (27357890-27358006) | |
| 460-568, gnl|echTel1|scaffold_321810 (22198-22091) | |
| 460-568, gnl|echTel1|scaffold_321810 (22081-22199) | |
| 460-568, gnl|fr1|chrUn (104566206-104566316) | |
| 460-568, gnl|fr1|chrUn (104566319-104566205) | |
| 460-568, gnl|hg17|chr4 (104369931-104370049) | |
| 460-568, gnl|Hg17|chr4 (104370047-104369939) | |
| 460-568, gnl|hg17|chr6 (99729589-99729699) | |
| 460-568, gnl|loxAfr1|scaffold_51247 (8179-8061) | |
| 460-568, gnl|loxAfr1|scaffold_80811 (596-706) | |
| 460-568, gnl|mm7|chr3 (135085338-135085447) | |
| 460-568, gnl|mm7|chr3 (135085455-135085337) | |
| 460-568, gnl|Mm7|chr3 (135085337-135085445) | |
| 460-568, gnl|monDom2|scaffold_37 (8479329-8479202) | |
| 460-568, gnl|oryCun1|scaffold_202728 (40696-40806) | |
| 460-568, gnl|oryCun1|scaffold_202728 (40813-40695) | |
| 460-568, gnl|panTro1|chr3 (120771152-120771270) | |
| 460-568, gnl|panTro1|chr5 (101712899-101713009) | |
| 460-568, gnl|rheMac2|chr5 (96086277-96086191) | |
| 460-568, gnl|rheMac2|chr5 (96086183-96086277) | |
| 460-568, gnl|rn3|chr2 (232760572-232760682) | |
| 460-568, gnl|rn3|chr2 (232760693-232760571) | |
| 460-568, gnl|tetNig1|chr18 (2601826-2601936) | |
| 460-568, gnl|tetNig1|chr18 (2601943-2601825) | |
| 460-568, gnl|xenTro1|scaffold_1973 (8632-8742) | |
| 629-746, gnl|bosTau2|chr6 (8365519-8365636) | |
| 629-746, gnl|canFam2|chr32 (27350021-27349908) | |
| 629-746, gnl|canFam2|chr32 (27349895-27350031) | |
| 629-746, gnl|echTel1|scaffold_321810 (15433-15320) | |
| 629-746, gnl|echTel1|scaffold_321810 (15307-15441) | |
| 629-746, gnl|fr1|chrUn (104566858-104566970) | |
| 629-746, gnl|fr1|chrUn (104566978-104566853) | |
| 629-746, gnl|hg17|chr4 (104364098-104364236) | |
| 629-746, gnl|Hg17|chr4 (104364225-104364108) | |
| 629-746, gnl|hg17|chr6 (99729758-99729871) | |
| 629-746, gnl|loxAfr1|scaffold_111887 (4454-4555) | |
| 629-746, gnl|loxAfr1|scaffold_111887 (4582-4444) | |
| 629-746, gnl|mm7|chr3 (135091163-135091276) | |
| 629-746, gnl|mm7|chr3 (135091283-135091158) | |
| 629-746, gnl|Mm7|chr3 (135091162-135091279) | |
| 629-746, gnl|monDom2|scaffold_37 (8483196-8483061) | |
| 629-746, gnl|panTro1|chr3 (120765307-120765445) | |
| 629-746, gnl|panTro1|chr5 (101713068-101713181) | |
| 629-746, gnl|rheMac2|chr5 (96080434-96080322) | |
| 629-746, gnl|rheMac2|chr5 (96080307-96080445) | |
| 629-746, gnl|rn3|chr2 (232766257-232766370) | |
| 629-746, gnl|rn3|chr2 (232766378-232766252) | |
| 629-746, gnl|tetNig1|chr18 (2602445-2602558) | |
| 629-746, gnl|tetNig1|chr18 (2602566-2602441) | |
| 629-746, gnl|xenTro1|scaffold_1973 (8801-8914) | |
| 1099-1259, gnl|bosTau2|chr16 (4954871-4954718) | |
| 1099-1259, gnl|Hg17|chr4 (104358308-104357788) |
| Aligned organism(s): 54 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 460-568, gnl|bosTau2|chr6 (8355440-8355548) | |
| 460-568, gnl|canFam2|chr32 (27358005-27357898) | |
| 460-568, gnl|canFam2|chr32 (27357890-27358006) | |
| 460-568, gnl|echTel1|scaffold_321810 (22198-22091) | |
| 460-568, gnl|echTel1|scaffold_321810 (22081-22199) | |
| 460-568, gnl|fr1|chrUn (104566206-104566316) | |
| 460-568, gnl|fr1|chrUn (104566319-104566205) | |
| 460-568, gnl|hg17|chr4 (104369931-104370049) | |
| 460-568, gnl|Hg17|chr4 (104370047-104369939) | |
| 460-568, gnl|hg17|chr6 (99729589-99729699) | |
| 460-568, gnl|loxAfr1|scaffold_51247 (8179-8061) | |
| 460-568, gnl|loxAfr1|scaffold_80811 (596-706) | |
| 460-568, gnl|mm7|chr3 (135085338-135085447) | |
| 460-568, gnl|mm7|chr3 (135085455-135085337) | |
| 460-568, gnl|Mm7|chr3 (135085337-135085445) | |
| 460-568, gnl|monDom2|scaffold_37 (8479329-8479202) | |
| 460-568, gnl|oryCun1|scaffold_202728 (40696-40806) | |
| 460-568, gnl|oryCun1|scaffold_202728 (40813-40695) | |
| 460-568, gnl|panTro1|chr3 (120771152-120771270) | |
| 460-568, gnl|panTro1|chr5 (101712899-101713009) | |
| 460-568, gnl|rheMac2|chr5 (96086277-96086191) | |
| 460-568, gnl|rheMac2|chr5 (96086183-96086277) | |
| 460-568, gnl|rn3|chr2 (232760572-232760682) | |
| 460-568, gnl|rn3|chr2 (232760693-232760571) | |
| 460-568, gnl|tetNig1|chr18 (2601826-2601936) | |
| 460-568, gnl|tetNig1|chr18 (2601943-2601825) | |
| 460-568, gnl|xenTro1|scaffold_1973 (8632-8742) | |
| 629-746, gnl|bosTau2|chr6 (8365519-8365636) | |
| 629-746, gnl|canFam2|chr32 (27350021-27349908) | |
| 629-746, gnl|canFam2|chr32 (27349895-27350031) | |
| 629-746, gnl|echTel1|scaffold_321810 (15433-15320) | |
| 629-746, gnl|echTel1|scaffold_321810 (15307-15441) | |
| 629-746, gnl|fr1|chrUn (104566858-104566970) | |
| 629-746, gnl|fr1|chrUn (104566978-104566853) | |
| 629-746, gnl|hg17|chr4 (104364098-104364236) | |
| 629-746, gnl|Hg17|chr4 (104364225-104364108) | |
| 629-746, gnl|hg17|chr6 (99729758-99729871) | |
| 629-746, gnl|loxAfr1|scaffold_111887 (4454-4555) | |
| 629-746, gnl|loxAfr1|scaffold_111887 (4582-4444) | |
| 629-746, gnl|mm7|chr3 (135091163-135091276) | |
| 629-746, gnl|mm7|chr3 (135091283-135091158) | |
| 629-746, gnl|Mm7|chr3 (135091162-135091279) | |
| 629-746, gnl|monDom2|scaffold_37 (8483196-8483061) | |
| 629-746, gnl|panTro1|chr3 (120765307-120765445) | |
| 629-746, gnl|panTro1|chr5 (101713068-101713181) | |
| 629-746, gnl|rheMac2|chr5 (96080434-96080322) | |
| 629-746, gnl|rheMac2|chr5 (96080307-96080445) | |
| 629-746, gnl|rn3|chr2 (232766257-232766370) | |
| 629-746, gnl|rn3|chr2 (232766378-232766252) | |
| 629-746, gnl|tetNig1|chr18 (2602445-2602558) | |
| 629-746, gnl|tetNig1|chr18 (2602566-2602441) | |
| 629-746, gnl|xenTro1|scaffold_1973 (8801-8914) | |
| 1099-1259, gnl|bosTau2|chr16 (4954871-4954718) | |
| 1099-1259, gnl|Hg17|chr4 (104358308-104357788) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| mgm (0.541028) | |
| ste (0.540833) | |
| rec (0.519211) | |
| cki (0.495704) | |
| hea (0.408998) | |
| bla (0.373042) | |
| jej (0.296765) | |
| spl (0.286369) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| eje (0.197668) | |
| sag (0.182715) | |
| cje (0.165235) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| pgl (0.118483) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| mgm (0.541028) | |
| ste (0.540833) | |
| rec (0.519211) | |
| cki (0.495704) | |
| hea (0.408998) | |
| bla (0.373042) | |
| jej (0.296765) | |
| spl (0.286369) | |
| kid (0.259471) | |
| sug (0.254582) | |
| tra (0.246184) | |
| cbe (0.239234) | |
| spc (0.226732) | |
| eje (0.197668) | |
| sag (0.182715) | |
| cje (0.165235) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| ski (0.146735) | |
| pty (0.142714) | |
| nca (0.136874) | |
| pla (0.133672) | |
| lyg (0.133103) | |
| ova (0.129132) | |
| pgl (0.118483) |