Non-Coding RNA Search

Ss1.1-Pig4-TMW8044I17.5

Sequence:


               
               CTGCCCGCCATGGCCCGCAGCTGCGCGCTGCTCTCCTGGGCCCTCCTCGCCCTCTTCGCC
CTCCTCGGGGCTGCTGGGGGAGGTCCGGCAAACTGCATCCCCATTGTGTCCCGCAGAGAG
TGGGGGGCCCTGGCGTCCGAGTGCTCTGCGAACCTGAGACGGCCAGTGCGCTACGTGGTG
GTATCGCACACGGCGGGCAGCACCTGCGATAACCCGGCCTCATGCCGGCGTCAGGTCCAG
AACGTGCAGCACTACCACGTGCGGACGCTGCACTGGTGCGACGTGGGCTACAACTTCCTG
ATCGGAGAAGACGGGCTTGTGTATGAAGGCCGGGGCTGGAACACCGTGGGCGCCCACTCA
GGTCCCACATGGAACCCCCTGTCTCTGGGCATCTCCTTCATGGGCAACTACATGAATCGG
GTGCCCCCGGCCCGTGCCATCAGGGCGGCCCAGAGTCTGCTGGCTTGTGGGGTGGCTCTG
GGAGTCCTGAGGCCCAACTACGAGGTCAAAGGACACCGGGATGTGCAGCCAACGCTTTCT
CCAGGTGACCAGCTGTACGAAATCATCCAGAAATGGCCACACTACCGCGCCTGAGCCCCG
CTCCTCACACTGCTTCCCACCCCCACCCAACCCATCAGAAGTCCTGGCGGCCTCCCCCTC
GCCTCAATAAATGCAAAGCTCAAAGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCCCGCCATGGCCCGCAGCTGCGCGCTGCTCTCCTGGGCCCTCCTCGCCCTCTTCGCC
CTCCTCGGGGCTGCTGGGGGAGGTCCGGCAAACTGCATCCCCATTGTGTCCCGCAGAGAG
TGGGGGGCCCTGGCGTCCGAGTGCTCTGCGAACCTGAGACGGCCAGTGCGCTACGTGGTG
GTATCGCACACGGCGGGCAGCACCTGCGATAACCCGGCCTCATGCCGGCGTCAGGTCCAG
AACGTGCAGCACTACCACGTGCGGACGCTGCACTGGTGCGACGTGGGCTACAACTTCCTG
ATCGGAGAAGACGGGCTTGTGTATGAAGGCCGGGGCTGGAACACCGTGGGCGCCCACTCA
GGTCCCACATGGAACCCCCTGTCTCTGGGCATCTCCTTCATGGGCAACTACATGAATCGG
GTGCCCCCGGCCCGTGCCATCAGGGCGGCCCAGAGTCTGCTGGCTTGTGGGGTGGCTCTG
GGAGTCCTGAGGCCCAACTACGAGGTCAAAGGACACCGGGATGTGCAGCCAACGCTTTCT
CCAGGTGACCAGCTGTACGAAATCATCCAGAAATGGCCACACTACCGCGCCTGAGCCCCG
CTCCTCACACTGCTTCCCACCCCCACCCAACCCATCAGAAGTCCTGGCGGCCTCCCCCTC
GCCTCAATAAATGCAAAGCTCAAAGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17402405|emb|CAC83647.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17402405|emb|CAC83647.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               155-274, + strand, RNAz p=0.694479

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               155-274, + strand, RNAz p=0.694479

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-315, gnl|bosTau2|chr18 (50607266-50606966)
               

               
               1-315, gnl|Hg17|chr19 (51218131-51217810)
               

               
               1-315, gnl|Mm7|chr7 (16567287-16567567)
               


               
               416-689, gnl|bosTau2|chr18 (50605490-50605221)
               

               
               416-689, gnl|Hg17|chr19 (51214517-51214247)
               

               
               416-689, gnl|Mm7|chr7 (16572743-16573024)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-315, gnl|bosTau2|chr18 (50607266-50606966)
               

               
               1-315, gnl|Hg17|chr19 (51218131-51217810)
               

               
               1-315, gnl|Mm7|chr7 (16567287-16567567)
               


               
               416-689, gnl|bosTau2|chr18 (50605490-50605221)
               

               
               416-689, gnl|Hg17|chr19 (51214517-51214247)
               

               
               416-689, gnl|Mm7|chr7 (16572743-16573024)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               cga (5.02372)
               

               
               nbm (0.993246)
               

               
               nca (0.410621)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               ute (0.265569)
               

               
               csp (0.161186)
               

               
               jca (0.11396)

Expressed library(ies): 8 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (5.02372)
               

               
               nbm (0.993246)
               

               
               nca (0.410621)
               

               
               mcp (0.341297)
               

               
               pty (0.285429)
               

               
               ute (0.265569)
               

               
               csp (0.161186)
               

               
               jca (0.11396)

	1-315, gnl\|bosTau2\|chr18 (50607266-50606966)
	1-315, gnl\|Hg17\|chr19 (51218131-51217810)
	1-315, gnl\|Mm7\|chr7 (16567287-16567567)

	416-689, gnl\|bosTau2\|chr18 (50605490-50605221)
	416-689, gnl\|Hg17\|chr19 (51214517-51214247)
	416-689, gnl\|Mm7\|chr7 (16572743-16573024)

	cga (5.02372)
	nbm (0.993246)
	nca (0.410621)
	mcp (0.341297)
	pty (0.285429)
	ute (0.265569)
	csp (0.161186)
	jca (0.11396)