Ss1.1-Pig4-TMW8044J19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACGGTTGGCAGACACCAGGGAACTGGTGGCCATCAAGAAAGTTCTCCAGGACAAGAGGT TCAAGAACCGAGAGCTGCAGATTATGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGA GATACTTTTTCTACTCCAGTGGGGAGAAGAAGGATGAGCTTTACCTAAATCTGGTGCTGG AGTATGTGCCTGAGACAGTGTACCGGGTGGCCCGCCATTTTACCAAGGCCAAGTTGACCA TCCCTATCATCTATGTCAAGGTGTACATGTACCAGCTCTTCCGGAGCTTGGCCTACATCC ACTCCCAGGGTGTGTGTCACCGCGACATCAAGCCCCAGAACCTGCTGGTGGACCCTGACA CCGCTGTCCTCAAGCTCTGCGATTTTGGCAGTGCAAAGCAGTTGGTCCGGGGGGAGCCCA ATGTCTCCTACATCTGTTCTCGCTACTATCGGGCCCCGGAGCTGATCTTTGGAGCCACCG ATTACACCTCATCCATCGATGTGTGGTCAGCTGGCTGCGTACTGGCCGAGCTCCTCCTGG GCCAGCCCATCTTCCCTGGGGACAGTGGGGTAGACCAGCTGGTGGAGATCATCAAGGTGC TGGGAACACCAACCCGGGAACAGATTCGAGAGATGAACCCTAACTACACGGAGTTCAAGT TCCCCCAGATTAAAGCTCACCCCTGGACAAAGGTGTTCAAATCTCGAACGCCGCCCGAGG CCATTACGCTCTGCTCTAGCCTGCTGGAGTACACCCCGTCCTCGAGGCTCTCCCCGCTGG AAGCCTGTGCCCACAACTTCTTTGATGAACTGCGATGTCCTGGAACCCAGCTCCCCAACA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACGGTTGGCAGACACCAGGGAACTGGTGGCCATCAAGAAAGTTCTCCAGGACAAGAGGT TCAAGAACCGAGAGCTGCAGATTATGCGTAAGCTGGACCACTGCAATATTGTGAGGCTGA GATACTTTTTCTACTCCAGTGGGGAGAAGAAGGATGAGCTTTACCTAAATCTGGTGCTGG AGTATGTGCCTGAGACAGTGTACCGGGTGGCCCGCCATTTTACCAAGGCCAAGTTGACCA TCCCTATCATCTATGTCAAGGTGTACATGTACCAGCTCTTCCGGAGCTTGGCCTACATCC ACTCCCAGGGTGTGTGTCACCGCGACATCAAGCCCCAGAACCTGCTGGTGGACCCTGACA CCGCTGTCCTCAAGCTCTGCGATTTTGGCAGTGCAAAGCAGTTGGTCCGGGGGGAGCCCA ATGTCTCCTACATCTGTTCTCGCTACTATCGGGCCCCGGAGCTGATCTTTGGAGCCACCG ATTACACCTCATCCATCGATGTGTGGTCAGCTGGCTGCGTACTGGCCGAGCTCCTCCTGG GCCAGCCCATCTTCCCTGGGGACAGTGGGGTAGACCAGCTGGTGGAGATCATCAAGGTGC TGGGAACACCAACCCGGGAACAGATTCGAGAGATGAACCCTAACTACACGGAGTTCAAGT TCCCCCAGATTAAAGCTCACCCCTGGACAAAGGTGTTCAAATCTCGAACGCCGCCCGAGG CCATTACGCTCTGCTCTAGCCTGCTGGAGTACACCCCGTCCTCGAGGCTCTCCCCGCTGG AAGCCTGTGCCCACAACTTCTTTGATGAACTGCGATGTCCTGGAACCCAGCTCCCCAACA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 259-378, - strand, RNAz p=0.704844 | |
| 498-611, + strand, RNAz p=0.535604 | |
| 691-807, + strand, RNAz p=0.744323 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 259-378, - strand, RNAz p=0.704844 | |
| 498-611, + strand, RNAz p=0.535604 | |
| 691-807, + strand, RNAz p=0.744323 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 259-391, gnl|bosTau2|chr18 (44951442-44951310) | |
| 259-391, gnl|canFam2|chr1 (115029665-115029500) | |
| 259-391, gnl|danRer3|chr19 (1433420-1433589) | |
| 259-391, gnl|dasNov1|scaffold_297391 (944-775) | |
| 259-391, gnl|echTel1|scaffold_226727 (3373-3248) | |
| 259-391, gnl|fr1|chrUn (100300896-100300754) | |
| 259-391, gnl|galGal2|chr2 (158987-159124) | |
| 259-391, gnl|hg17|chr19 (47430539-47430710) | |
| 259-391, gnl|Hg17|chr19 (47430672-47430540) | |
| 259-391, gnl|loxAfr1|scaffold_81478 (3399-3242) | |
| 259-391, gnl|mm7|chr7 (22020902-22021075) | |
| 259-391, gnl|Mm7|chr7 (22021033-22020901) | |
| 259-391, gnl|oryCun1|scaffold_201459 (57767-57601) | |
| 259-391, gnl|panTro1|chr20 (44323779-44323948) | |
| 259-391, gnl|rheMac2|chr19 (48551185-48551354) | |
| 259-391, gnl|rn3|chr1 (80586116-80586284) | |
| 259-391, gnl|tetNig1|chr8 (9537940-9537796) | |
| 259-391, gnl|xenTro1|scaffold_187 (1794566-1794401) | |
| 498-618, gnl|bosTau2|chr18 (44950176-44950056) | |
| 498-618, gnl|Hg17|chr19 (47429376-47429255) | |
| 498-618, gnl|Mm7|chr7 (22019950-22019818) | |
| 691-840, gnl|bosTau2|chr18 (44949548-44949399) | |
| 691-840, gnl|canFam2|chr1 (115031692-115031522) | |
| 691-840, gnl|danRer3|chr19 (1429743-1429913) | |
| 691-840, gnl|dasNov1|scaffold_77393 (9215-9045) | |
| 691-840, gnl|echTel1|scaffold_243142 (8131-7966) | |
| 691-840, gnl|fr1|chrUn (100302114-100301944) | |
| 691-840, gnl|hg17|chr19 (47428511-47428681) | |
| 691-840, gnl|Hg17|chr19 (47428676-47428527) | |
| 691-840, gnl|loxAfr1|scaffold_166991 (4762-4592) | |
| 691-840, gnl|mm7|chr7 (22018941-22019114) | |
| 691-840, gnl|Mm7|chr7 (22019109-22018957) | |
| 691-840, gnl|oryCun1|scaffold_212280 (99922-99752) | |
| 691-840, gnl|panTro1|chr20 (44321749-44321919) | |
| 691-840, gnl|rheMac2|chr19 (48549142-48549312) | |
| 691-840, gnl|rn3|chr1 (80584005-80584175) | |
| 691-840, gnl|tetNig1|chr8 (9538950-9538780) | |
| 691-840, gnl|xenTro1|scaffold_187 (1798119-1797953) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 259-391, gnl|bosTau2|chr18 (44951442-44951310) | |
| 259-391, gnl|canFam2|chr1 (115029665-115029500) | |
| 259-391, gnl|danRer3|chr19 (1433420-1433589) | |
| 259-391, gnl|dasNov1|scaffold_297391 (944-775) | |
| 259-391, gnl|echTel1|scaffold_226727 (3373-3248) | |
| 259-391, gnl|fr1|chrUn (100300896-100300754) | |
| 259-391, gnl|galGal2|chr2 (158987-159124) | |
| 259-391, gnl|hg17|chr19 (47430539-47430710) | |
| 259-391, gnl|Hg17|chr19 (47430672-47430540) | |
| 259-391, gnl|loxAfr1|scaffold_81478 (3399-3242) | |
| 259-391, gnl|mm7|chr7 (22020902-22021075) | |
| 259-391, gnl|Mm7|chr7 (22021033-22020901) | |
| 259-391, gnl|oryCun1|scaffold_201459 (57767-57601) | |
| 259-391, gnl|panTro1|chr20 (44323779-44323948) | |
| 259-391, gnl|rheMac2|chr19 (48551185-48551354) | |
| 259-391, gnl|rn3|chr1 (80586116-80586284) | |
| 259-391, gnl|tetNig1|chr8 (9537940-9537796) | |
| 259-391, gnl|xenTro1|scaffold_187 (1794566-1794401) | |
| 498-618, gnl|bosTau2|chr18 (44950176-44950056) | |
| 498-618, gnl|Hg17|chr19 (47429376-47429255) | |
| 498-618, gnl|Mm7|chr7 (22019950-22019818) | |
| 691-840, gnl|bosTau2|chr18 (44949548-44949399) | |
| 691-840, gnl|canFam2|chr1 (115031692-115031522) | |
| 691-840, gnl|danRer3|chr19 (1429743-1429913) | |
| 691-840, gnl|dasNov1|scaffold_77393 (9215-9045) | |
| 691-840, gnl|echTel1|scaffold_243142 (8131-7966) | |
| 691-840, gnl|fr1|chrUn (100302114-100301944) | |
| 691-840, gnl|hg17|chr19 (47428511-47428681) | |
| 691-840, gnl|Hg17|chr19 (47428676-47428527) | |
| 691-840, gnl|loxAfr1|scaffold_166991 (4762-4592) | |
| 691-840, gnl|mm7|chr7 (22018941-22019114) | |
| 691-840, gnl|Mm7|chr7 (22019109-22018957) | |
| 691-840, gnl|oryCun1|scaffold_212280 (99922-99752) | |
| 691-840, gnl|panTro1|chr20 (44321749-44321919) | |
| 691-840, gnl|rheMac2|chr19 (48549142-48549312) | |
| 691-840, gnl|rn3|chr1 (80584005-80584175) | |
| 691-840, gnl|tetNig1|chr8 (9538950-9538780) | |
| 691-840, gnl|xenTro1|scaffold_187 (1798119-1797953) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eep (0.122564) |