Ss1.1-Pig4-TMW8044J23.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GTGGCGTCCAGGTGGAGGCTTTGAGAAGATCCGCTGGGTATGGCGTTGGCGTCTGGACCC GCAAGGCGGGCGCTGGCTCGCCCCGGCCGGCTCGGCCTTGGGGGCTGCGGGGCCCCGAGA CGCGGGGCGTACGAGTGGGGTGTGCGCTCCACGCGGAAACCCGAGCCTCCTCCCCTGGAC AGAGTGTATGAGATCCCAGGACTGGAGCCCATCACCTACGCGGGGAAAATGCACTTCATG CCCGGCCTGGCGCGGCCAGTCTTCCCTCCTTGGGACCCCGGCTGGACGCACCCAAAGTTC CGCCGCTTGCCCCCGCTTCACGAGCACCCGCTGTACAAGGACCAGGCGTGCTACGTCTTT CACCAGCGTTGCCGTCTCCTCGAGGGTGTAAAGCAGGCCCTCTGGCTTACCAAGACCCAG TTAATAGAAGGCCTTCCTGAGAAAGTGCTTCGCCTTGCTGACGATCCACGGAACCACATA GAGAACCAGGATGAACGCGTTCTGAATGCCATCTCTCATGCTCGCCTCTGGCACTCTACT GAAGACATCCCCAAGAGAGAGACCTACTGCCCAGTCATTGTGGACAGTCTGATTCAGCTG TGTAAATCCCAGATTCTCAAGCATCCTTCTCTGGCCAGGCGGATCTGTGCCCAAAACAAC ACATTATCTGCCACCTGGAATCGAGAGTCTATTCTCCTTCAGGTCCATGGTTCCAGTGGA GCCCGACTGAATGCCAAGGATCCTCTGCCCCCTGTTGCCTCCCAAGAGGAGGTGGAAGCT ACTAAGAATCACGTTCTCGAGACCTTCTATCCCATATCTCCCACTATGGGTCTTCAGGAA TGCAATGTTTATGATGTGAATGATGATACAGGGTTCCAGGAGGGTTATCCTTACCCCTGT CCCCACACCCTGTATTTCCTGGAGTCAGCCAATTTACGACCACGCCGCTTTCAACCAGAT CAGCTGCGGGCCAAGATGATCCTGTTTGCTTTTGGAAGTGCCCTGGCTCAGGCCCGGCTC CTCTATGGGAACGACTCTAAGGTTTTGGAGCAGCCGGTCGTTGTGCAGAGTGTGGGTACT GATGGACGTCTCTTCCAGTTTCTGGTGCTACAACTGAACACCACAGATCTGGCCTCTGAT GAGGGCGTCAAGAATCTAGCCTGGGTGGACTCAGACCAGCTCCTCTATCAGCATTTTTGG TGTCTCCCCGTGATCAAGAAGAAGGTGGTTGTGGAACCTGTTGGGCCGATTGGTTTCCAG CCAGAGACATTCAGGAAGTTTCTAGCTCTGTATCTGCATGGTGCCGTGTGAGCCAAGGAC CACTCCGAGGGCTGGAGCCCCTGAGCCGCAGTGCTCCTTTGGCTGCTGGTGGACTTGCAG ACAATAAAGAGCCTTTCTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTCGTCGGGA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GTGGCGTCCAGGTGGAGGCTTTGAGAAGATCCGCTGGGTATGGCGTTGGCGTCTGGACCC GCAAGGCGGGCGCTGGCTCGCCCCGGCCGGCTCGGCCTTGGGGGCTGCGGGGCCCCGAGA CGCGGGGCGTACGAGTGGGGTGTGCGCTCCACGCGGAAACCCGAGCCTCCTCCCCTGGAC AGAGTGTATGAGATCCCAGGACTGGAGCCCATCACCTACGCGGGGAAAATGCACTTCATG CCCGGCCTGGCGCGGCCAGTCTTCCCTCCTTGGGACCCCGGCTGGACGCACCCAAAGTTC CGCCGCTTGCCCCCGCTTCACGAGCACCCGCTGTACAAGGACCAGGCGTGCTACGTCTTT CACCAGCGTTGCCGTCTCCTCGAGGGTGTAAAGCAGGCCCTCTGGCTTACCAAGACCCAG TTAATAGAAGGCCTTCCTGAGAAAGTGCTTCGCCTTGCTGACGATCCACGGAACCACATA GAGAACCAGGATGAACGCGTTCTGAATGCCATCTCTCATGCTCGCCTCTGGCACTCTACT GAAGACATCCCCAAGAGAGAGACCTACTGCCCAGTCATTGTGGACAGTCTGATTCAGCTG TGTAAATCCCAGATTCTCAAGCATCCTTCTCTGGCCAGGCGGATCTGTGCCCAAAACAAC ACATTATCTGCCACCTGGAATCGAGAGTCTATTCTCCTTCAGGTCCATGGTTCCAGTGGA GCCCGACTGAATGCCAAGGATCCTCTGCCCCCTGTTGCCTCCCAAGAGGAGGTGGAAGCT ACTAAGAATCACGTTCTCGAGACCTTCTATCCCATATCTCCCACTATGGGTCTTCAGGAA TGCAATGTTTATGATGTGAATGATGATACAGGGTTCCAGGAGGGTTATCCTTACCCCTGT CCCCACACCCTGTATTTCCTGGAGTCAGCCAATTTACGACCACGCCGCTTTCAACCAGAT CAGCTGCGGGCCAAGATGATCCTGTTTGCTTTTGGAAGTGCCCTGGCTCAGGCCCGGCTC CTCTATGGGAACGACTCTAAGGTTTTGGAGCAGCCGGTCGTTGTGCAGAGTGTGGGTACT GATGGACGTCTCTTCCAGTTTCTGGTGCTACAACTGAACACCACAGATCTGGCCTCTGAT GAGGGCGTCAAGAATCTAGCCTGGGTGGACTCAGACCAGCTCCTCTATCAGCATTTTTGG TGTCTCCCCGTGATCAAGAAGAAGGTGGTTGTGGAACCTGTTGGGCCGATTGGTTTCCAG CCAGAGACATTCAGGAAGTTTCTAGCTCTGTATCTGCATGGTGCCGTGTGAGCCAAGGAC CACTCCGAGGGCTGGAGCCCCTGAGCCGCAGTGCTCCTTTGGCTGCTGGTGGACTTGCAG ACAATAAAGAGCCTTTCTGGTGAAAAAAAAAAAAAAAAAAAAAAAAAAGTGTCGTCGGGA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 3-116, gnl|bosTau2|chr18 (8190974-8191084) | |
| 3-116, gnl|Hg17|chr1 (54377901-54378014) | |
| 385-569, gnl|bosTau2|chr3 (60895781-60895597) | |
| 385-569, gnl|canFam2|chr5 (57841827-57841609) | |
| 385-569, gnl|danRer3|chrUn (23945399-23945593) | |
| 385-569, gnl|echTel1|scaffold_314638 (45054-45271) | |
| 385-569, gnl|galGal2|chr8 (25408676-25408883) | |
| 385-569, gnl|hg17|chr1 (54382683-54382901) | |
| 385-569, gnl|Hg17|chr1 (54382711-54382895) | |
| 385-569, gnl|loxAfr1|scaffold_30 (192398-192615) | |
| 385-569, gnl|mm7|chr4 (106441240-106441022) | |
| 385-569, gnl|Mm7|chr4 (106441210-106441026) | |
| 385-569, gnl|monDom2|scaffold_244 (520930-521147) | |
| 385-569, gnl|oryCun1|scaffold_213599 (41386-41168) | |
| 385-569, gnl|panTro1|chr1 (52639909-52640127) | |
| 385-569, gnl|rheMac2|chr1 (57083218-57083436) | |
| 385-569, gnl|rn3|chr5 (128149163-128148945) | |
| 385-569, gnl|tetNig1|chrUn_random (40548915-40548703) | |
| 684-872, gnl|bosTau2|chr3 (60890149-60889961) | |
| 684-872, gnl|Hg17|chr1 (54387638-54387826) | |
| 684-872, gnl|Mm7|chr4 (106438509-106438321) | |
| 1029-1234, gnl|bosTau2|chr3 (60884440-60884235) | |
| 1029-1234, gnl|Hg17|chr1 (54393834-54394039) | |
| 1029-1234, gnl|Mm7|chr4 (106434015-106433810) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 3-116, gnl|bosTau2|chr18 (8190974-8191084) | |
| 3-116, gnl|Hg17|chr1 (54377901-54378014) | |
| 385-569, gnl|bosTau2|chr3 (60895781-60895597) | |
| 385-569, gnl|canFam2|chr5 (57841827-57841609) | |
| 385-569, gnl|danRer3|chrUn (23945399-23945593) | |
| 385-569, gnl|echTel1|scaffold_314638 (45054-45271) | |
| 385-569, gnl|galGal2|chr8 (25408676-25408883) | |
| 385-569, gnl|hg17|chr1 (54382683-54382901) | |
| 385-569, gnl|Hg17|chr1 (54382711-54382895) | |
| 385-569, gnl|loxAfr1|scaffold_30 (192398-192615) | |
| 385-569, gnl|mm7|chr4 (106441240-106441022) | |
| 385-569, gnl|Mm7|chr4 (106441210-106441026) | |
| 385-569, gnl|monDom2|scaffold_244 (520930-521147) | |
| 385-569, gnl|oryCun1|scaffold_213599 (41386-41168) | |
| 385-569, gnl|panTro1|chr1 (52639909-52640127) | |
| 385-569, gnl|rheMac2|chr1 (57083218-57083436) | |
| 385-569, gnl|rn3|chr5 (128149163-128148945) | |
| 385-569, gnl|tetNig1|chrUn_random (40548915-40548703) | |
| 684-872, gnl|bosTau2|chr3 (60890149-60889961) | |
| 684-872, gnl|Hg17|chr1 (54387638-54387826) | |
| 684-872, gnl|Mm7|chr4 (106438509-106438321) | |
| 1029-1234, gnl|bosTau2|chr3 (60884440-60884235) | |
| 1029-1234, gnl|Hg17|chr1 (54393834-54394039) | |
| 1029-1234, gnl|Mm7|chr4 (106434015-106433810) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| eye (0.341006) | |
| nje (0.33184) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| cly (0.241284) | |
| tes (0.207814) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| eye (0.341006) | |
| nje (0.33184) | |
| nbm (0.297974) | |
| hyp (0.285673) | |
| cga (0.279096) | |
| cly (0.241284) | |
| tes (0.207814) | |
| col (0.195008) | |
| ill (0.175593) | |
| ton (0.1755) | |
| duo (0.172801) | |
| cki (0.165235) | |
| cli (0.152812) | |
| eli (0.151814) | |
| spl (0.143184) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| ste (0.135208) | |
| cov (0.132153) | |
| eep (0.122564) | |
| ecc (0.115035) | |
| jca (0.11396) | |
| jej (0.0989218) |