Ss1.1-Pig4-TMW8044K03.3.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCAAGAAATAGTTCGCTCTTTCTCTGGCACAACCTGCCAGCCCATTCAACATATGTTACG GCGTATTTGTGTTCAATTGTGTGACCTTGCCTCACCAACTGCACTTCTGATTATGAGAAC TGTGTTGGATTTGATTGTAGAAGACTTGCAAAGCACTTCAGAAGATAAAGAGAAACAGTA TACTAGCCAAACCACCAGGTTGCTTGCTCTTCTTGATGCTCTGGCTTCACACAAAGCTTG TAAATTAGCTATTTTGCATCTAATTAATGGAACTATTAAAGGTGATGAAAGATATGCAGA GATATTCCAGGACCTGTTGGCTTTGGTGCGGTCTCCTGGAGACAGTGTTGTTCGCCAACA GTGTGTTGAATATATCACATCCATTTTGCAGTCTCTCTGTGATCAGGACATTGCACTAAT TTTGCCAAACTCTTCTGAAGGTTCTATTTCTGAACTGGAGCAGCTCTCCAATTCTCTACC AAACAAAGAATTGATGGCCTCAATCTGTGACTGTCTCCTGGCTGTGCTAGCTAACTCTGA GAGCAGTTACAACTGTTTACTGACATGTGTGAGAACAATGATGTTTCTTGCAGAGCATGA TTATGGATTATTTCATTTAAAAAGTTCTTTAAGGAAAAACAGTAATGCTCTGCATAGTTT ATTGAAACGAGTGGTCAGTACATTTAGTAAAGACACAGGGGAACTAGCGTCTTCATTTTT GGAATTTATGAGACAAATTCTTAATTCTGATACAATGGGATGTTGTGGAGATGATAGTGG TCTCATGGAAGTAGAGGGAGCTCATCCATCGCGGACAATGAGTATTAATGCTGCAGAGTT AAAACAGCTTCTACAGAGCAAAGAAGAAAGTCCAGAAAATTTGTTCCTTGAACTAGAGAA GCTTGTTTTGGAGCATTCAAAAGATGATGACAATCTGGACTCTTTGTTGGACAATGTGGT TGGACTTAAGCAGATGCTGGAGTCATCAGGTGATCCTTTACCTCTTGGTGACCAGGATAT AGAACCAGTACTTTCAGCTCCAGAATCTCTCCAGAATCTGTTTAACAATAGAACTGCATA TGTGCTAGCTGATGTCATGGATGATCAATTGAAATCTATGTGGTTCACTCCATTTCAGGC TGAAGAGATTGATACAGATCTGGATTTGGTAAAGGTTGACTTAATTGAGCTCTCTGAAAA GTGTTGTAGTGATTTTGACTTGCACTCAGAATTAGAGCGCTCATTTTTGTCAGAACCATC ATCTCCAGGAAGAACCAAGACTACTAAAGGATTCAAACTTGGGAAACACAAGCACGAGAC CTTTATAACTTCAAGTGGAAAATCTGAATACATTGAACCTGCCAAACGAGCTCATGTTGT GCCACCACCAAGAGGAAGGGGCCGAGGAGGATTTGGACAGGGTATACGACCTCATGACAT TTTTCGTCAAAGAAAACAGAACACAAGCAGACCACCATCCATGCATGTGGATGACTTTGT TGCAGCTGAAAGTAAAGAAGTAGTCCCTCAAGATGGGATACCCCCTCCAAAACGGCCACT CAAAGTATCACAGAAGATTTCTTCTCGTGGTGGATTTTCAGGCAATCGGGGAGGACGGGG TGCTTTTCACAGTCAGAATAGATTTTTTACACCACCTGCTTCAAAAGGAAACTACAGTCG TCGGGAGGGAACGCGAGGCTCCAGTTGGAGTGCTCAGAATACTCCTCGAGGAACTTACAA TGAAAGTCGTGGCGGCCAGAGCAATTTTAACAGGGGTCCTCTTCCACCATTACGACCACT TAGTTCTACAGGTTACCGCCCAAGTCCTCGTGACCGTGCTTCCAGAGGTCGTGGGGGACT TGGACCCTCCTGGGCAAGTGCAAATAGTGGCAGTGGAGGCTCAAGAGGAAAGTTTGTTAG TGGAGGCAGTGGTAGAGGTCGTCATGTACGATCCTTTACACGATAAAAAAATTCTTTTGA GAACTTCTGAGTGTATATGAACATGTCATGAGGACAATAAAAATGAAACAAGACATTGGA GGACCAATTTAGACCTAGCAGTTATCTGGATACATCTGAGAGAATATTTTTATCTGAAGA AAGCAGATTTTGTTTGATACCTAACACAAGATTTCAATAAAAATCCAACTTTGTATGTAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCAAGAAATAGTTCGCTCTTTCTCTGGCACAACCTGCCAGCCCATTCAACATATGTTACG GCGTATTTGTGTTCAATTGTGTGACCTTGCCTCACCAACTGCACTTCTGATTATGAGAAC TGTGTTGGATTTGATTGTAGAAGACTTGCAAAGCACTTCAGAAGATAAAGAGAAACAGTA TACTAGCCAAACCACCAGGTTGCTTGCTCTTCTTGATGCTCTGGCTTCACACAAAGCTTG TAAATTAGCTATTTTGCATCTAATTAATGGAACTATTAAAGGTGATGAAAGATATGCAGA GATATTCCAGGACCTGTTGGCTTTGGTGCGGTCTCCTGGAGACAGTGTTGTTCGCCAACA GTGTGTTGAATATATCACATCCATTTTGCAGTCTCTCTGTGATCAGGACATTGCACTAAT TTTGCCAAACTCTTCTGAAGGTTCTATTTCTGAACTGGAGCAGCTCTCCAATTCTCTACC AAACAAAGAATTGATGGCCTCAATCTGTGACTGTCTCCTGGCTGTGCTAGCTAACTCTGA GAGCAGTTACAACTGTTTACTGACATGTGTGAGAACAATGATGTTTCTTGCAGAGCATGA TTATGGATTATTTCATTTAAAAAGTTCTTTAAGGAAAAACAGTAATGCTCTGCATAGTTT ATTGAAACGAGTGGTCAGTACATTTAGTAAAGACACAGGGGAACTAGCGTCTTCATTTTT GGAATTTATGAGACAAATTCTTAATTCTGATACAATGGGATGTTGTGGAGATGATAGTGG TCTCATGGAAGTAGAGGGAGCTCATCCATCGCGGACAATGAGTATTAATGCTGCAGAGTT AAAACAGCTTCTACAGAGCAAAGAAGAAAGTCCAGAAAATTTGTTCCTTGAACTAGAGAA GCTTGTTTTGGAGCATTCAAAAGATGATGACAATCTGGACTCTTTGTTGGACAATGTGGT TGGACTTAAGCAGATGCTGGAGTCATCAGGTGATCCTTTACCTCTTGGTGACCAGGATAT AGAACCAGTACTTTCAGCTCCAGAATCTCTCCAGAATCTGTTTAACAATAGAACTGCATA TGTGCTAGCTGATGTCATGGATGATCAATTGAAATCTATGTGGTTCACTCCATTTCAGGC TGAAGAGATTGATACAGATCTGGATTTGGTAAAGGTTGACTTAATTGAGCTCTCTGAAAA GTGTTGTAGTGATTTTGACTTGCACTCAGAATTAGAGCGCTCATTTTTGTCAGAACCATC ATCTCCAGGAAGAACCAAGACTACTAAAGGATTCAAACTTGGGAAACACAAGCACGAGAC CTTTATAACTTCAAGTGGAAAATCTGAATACATTGAACCTGCCAAACGAGCTCATGTTGT GCCACCACCAAGAGGAAGGGGCCGAGGAGGATTTGGACAGGGTATACGACCTCATGACAT TTTTCGTCAAAGAAAACAGAACACAAGCAGACCACCATCCATGCATGTGGATGACTTTGT TGCAGCTGAAAGTAAAGAAGTAGTCCCTCAAGATGGGATACCCCCTCCAAAACGGCCACT CAAAGTATCACAGAAGATTTCTTCTCGTGGTGGATTTTCAGGCAATCGGGGAGGACGGGG TGCTTTTCACAGTCAGAATAGATTTTTTACACCACCTGCTTCAAAAGGAAACTACAGTCG TCGGGAGGGAACGCGAGGCTCCAGTTGGAGTGCTCAGAATACTCCTCGAGGAACTTACAA TGAAAGTCGTGGCGGCCAGAGCAATTTTAACAGGGGTCCTCTTCCACCATTACGACCACT TAGTTCTACAGGTTACCGCCCAAGTCCTCGTGACCGTGCTTCCAGAGGTCGTGGGGGACT TGGACCCTCCTGGGCAAGTGCAAATAGTGGCAGTGGAGGCTCAAGAGGAAAGTTTGTTAG TGGAGGCAGTGGTAGAGGTCGTCATGTACGATCCTTTACACGATAAAAAAATTCTTTTGA GAACTTCTGAGTGTATATGAACATGTCATGAGGACAATAAAAATGAAACAAGACATTGGA GGACCAATTTAGACCTAGCAGTTATCTGGATACATCTGAGAGAATATTTTTATCTGAAGA AAGCAGATTTTGTTTGATACCTAACACAAGATTTCAATAAAAATCCAACTTTGTATGTAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 1493-1612, - strand, RNAz p=0.535818 | |
| 1799-1917, + strand, RNAz p=0.620879 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1493-1612, - strand, RNAz p=0.535818 | |
| 1799-1917, + strand, RNAz p=0.620879 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AL832487, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 152-455, gnl|bosTau2|chr19 (35127259-35127564) | |
| 152-455, gnl|Hg17|chr8 (95591346-95591022) | |
| 152-455, gnl|Mm7|chr4 (11455683-11455968) | |
| 611-763, gnl|bosTau2|chr19 (35134866-35135019) | |
| 611-763, gnl|Hg17|chr8 (95580925-95580746) | |
| 611-763, gnl|Mm7|chr4 (11461321-11461474) | |
| 910-1071, gnl|bosTau2|chr19 (35138671-35138832) | |
| 910-1071, gnl|canFam2|chr29 (42202458-42202653) | |
| 910-1071, gnl|danRer3|chr16 (23244642-23244460) | |
| 910-1071, gnl|dasNov1|scaffold_90009 (1983-1782) | |
| 910-1071, gnl|echTel1|scaffold_238034 (264-464) | |
| 910-1071, gnl|fr1|chrUn (62245420-62245611) | |
| 910-1071, gnl|galGal2|chr2 (125492505-125492688) | |
| 910-1071, gnl|hg17|chr8 (95577122-95577323) | |
| 910-1071, gnl|Hg17|chr8 (95577296-95577135) | |
| 910-1071, gnl|mm7|chr4 (11467803-11467604) | |
| 910-1071, gnl|Mm7|chr4 (11467627-11467788) | |
| 910-1071, gnl|monDom2|scaffold_3 (71124104-71123901) | |
| 910-1071, gnl|oryCun1|scaffold_172533 (40160-40361) | |
| 910-1071, gnl|panTro1|chr7 (97811623-97811824) | |
| 910-1071, gnl|rheMac2|chr8 (97073139-97073340) | |
| 910-1071, gnl|rn3|chr5 (25696590-25696789) | |
| 910-1071, gnl|xenTro1|scaffold_59 (1109956-1109782) | |
| 1334-1675, gnl|bosTau2|chr19 (35141479-35141820) | |
| 1334-1675, gnl|canFam2|chr29 (42198779-42199135) | |
| 1334-1675, gnl|danRer3|chr16 (23248809-23248452) | |
| 1334-1675, gnl|dasNov1|scaffold_18305 (2188-2541) | |
| 1334-1675, gnl|fr1|chrUn (62244268-62244622) | |
| 1334-1675, gnl|galGal2|chr2 (125490585-125490933) | |
| 1334-1675, gnl|hg17|chr8 (95572973-95573331) | |
| 1334-1675, gnl|Hg17|chr8 (95573315-95572974) | |
| 1334-1675, gnl|loxAfr1|scaffold_160718 (221-578) | |
| 1334-1675, gnl|mm7|chr4 (11473458-11473099) | |
| 1334-1675, gnl|Mm7|chr4 (11473114-11473455) | |
| 1334-1675, gnl|monDom2|scaffold_3 (71126916-71126542) | |
| 1334-1675, gnl|oryCun1|scaffold_172533 (36480-36838) | |
| 1334-1675, gnl|panTro1|chr7 (97807459-97807817) | |
| 1334-1675, gnl|rheMac2|chr8 (97068747-97069105) | |
| 1334-1675, gnl|rn3|chr5 (25691542-25691900) | |
| 1334-1675, gnl|tetNig1|chr8 (7415491-7415838) | |
| 1334-1675, gnl|xenTro1|scaffold_59 (1111227-1110878) | |
| 1799-2159, gnl|bosTau2|chr19 (35145117-35145470) | |
| 1799-2159, gnl|Hg17|chr8 (95570277-95569924) | |
| 1799-2159, gnl|Mm7|chr4 (11476679-11477032) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 152-455, gnl|bosTau2|chr19 (35127259-35127564) | |
| 152-455, gnl|Hg17|chr8 (95591346-95591022) | |
| 152-455, gnl|Mm7|chr4 (11455683-11455968) | |
| 611-763, gnl|bosTau2|chr19 (35134866-35135019) | |
| 611-763, gnl|Hg17|chr8 (95580925-95580746) | |
| 611-763, gnl|Mm7|chr4 (11461321-11461474) | |
| 910-1071, gnl|bosTau2|chr19 (35138671-35138832) | |
| 910-1071, gnl|canFam2|chr29 (42202458-42202653) | |
| 910-1071, gnl|danRer3|chr16 (23244642-23244460) | |
| 910-1071, gnl|dasNov1|scaffold_90009 (1983-1782) | |
| 910-1071, gnl|echTel1|scaffold_238034 (264-464) | |
| 910-1071, gnl|fr1|chrUn (62245420-62245611) | |
| 910-1071, gnl|galGal2|chr2 (125492505-125492688) | |
| 910-1071, gnl|hg17|chr8 (95577122-95577323) | |
| 910-1071, gnl|Hg17|chr8 (95577296-95577135) | |
| 910-1071, gnl|mm7|chr4 (11467803-11467604) | |
| 910-1071, gnl|Mm7|chr4 (11467627-11467788) | |
| 910-1071, gnl|monDom2|scaffold_3 (71124104-71123901) | |
| 910-1071, gnl|oryCun1|scaffold_172533 (40160-40361) | |
| 910-1071, gnl|panTro1|chr7 (97811623-97811824) | |
| 910-1071, gnl|rheMac2|chr8 (97073139-97073340) | |
| 910-1071, gnl|rn3|chr5 (25696590-25696789) | |
| 910-1071, gnl|xenTro1|scaffold_59 (1109956-1109782) | |
| 1334-1675, gnl|bosTau2|chr19 (35141479-35141820) | |
| 1334-1675, gnl|canFam2|chr29 (42198779-42199135) | |
| 1334-1675, gnl|danRer3|chr16 (23248809-23248452) | |
| 1334-1675, gnl|dasNov1|scaffold_18305 (2188-2541) | |
| 1334-1675, gnl|fr1|chrUn (62244268-62244622) | |
| 1334-1675, gnl|galGal2|chr2 (125490585-125490933) | |
| 1334-1675, gnl|hg17|chr8 (95572973-95573331) | |
| 1334-1675, gnl|Hg17|chr8 (95573315-95572974) | |
| 1334-1675, gnl|loxAfr1|scaffold_160718 (221-578) | |
| 1334-1675, gnl|mm7|chr4 (11473458-11473099) | |
| 1334-1675, gnl|Mm7|chr4 (11473114-11473455) | |
| 1334-1675, gnl|monDom2|scaffold_3 (71126916-71126542) | |
| 1334-1675, gnl|oryCun1|scaffold_172533 (36480-36838) | |
| 1334-1675, gnl|panTro1|chr7 (97807459-97807817) | |
| 1334-1675, gnl|rheMac2|chr8 (97068747-97069105) | |
| 1334-1675, gnl|rn3|chr5 (25691542-25691900) | |
| 1334-1675, gnl|tetNig1|chr8 (7415491-7415838) | |
| 1334-1675, gnl|xenTro1|scaffold_59 (1111227-1110878) | |
| 1799-2159, gnl|bosTau2|chr19 (35145117-35145470) | |
| 1799-2159, gnl|Hg17|chr8 (95570277-95569924) | |
| 1799-2159, gnl|Mm7|chr4 (11476679-11477032) |
| Expressed library(ies): 20 entry(ies) | More info |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
| cst (0.980255) | |
| pro (0.512033) | |
| sto (0.359648) | |
| cki (0.330469) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |
| Expressed library(ies): 20 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cst (0.980255) | |
| pro (0.512033) | |
| sto (0.359648) | |
| cki (0.330469) | |
| cty (0.20816) | |
| nep (0.183925) | |
| ill (0.175593) | |
| ton (0.1755) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cje (0.165235) | |
| hyp (0.142837) | |
| lnt (0.142308) | |
| nca (0.136874) | |
| nmm (0.132802) | |
| ese (0.126502) | |
| bla (0.124347) | |
| pgl (0.118483) | |
| ecc (0.115035) | |
| ldo (0.0970026) |