Ss1.1-Pig4-TMW8044K08.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGTCCGGCCAGCGGTCCCCGAGCCTGCGGTCGCACCGGAGCCGCTGCCGCCACTGCCACC GTTCACCATGGGCCTGGGTCCCCGGCTGCTACCTCTCGTGCTTTGCGTGGGGCTCAGCGC GCTCCTACCTTATGCGGGAGCCTCGGGCGTTCGCAAGCGAGGTCCCTCTGTGACGGCCAA GGTCTTCTTCGACGTGAGGATTGGAGATAAAGATGTTGGCAGAATTGTGATCGGCCTCTT TGGAAAAGTTGTGCCCAAGACAGTGGAAAATTTTATCGCTCTGGCAACAGGCGAGAGAGG ATACGGATATAAAGGAAGCAAGTTTCATCGTGTCATTAAAGATTTCATGATTCAAGGAGG AGACTTCACCCATGGAGACGGCACTGGTGGTATAAGCATTTATGGAGAGACTTTTCCAGA TGAGAACTTCAAATTGAAGCATTATGGCATTGGGTGGGTCAGCATGGCCAATGCTGGACC TGACACCAATGGCTCTCAGTTCTTTATCACCTTAACCAAGCCCACCTGGTTGGATGGCAA ACATGTAGTATTTGGAAAAGTCATCGATGGAATGACAGTGGTCCACTCCATCGAACTGCA GGCAACTGATGGGCATGACCGTCCACTCACCGACTGCTCCATCATCAACAGTGGCAAGAT AGACGTGAAAACGCCCTTCGTGGTAGAGGTTGCTGACTGGTGATCCAGCTGGCAGAAAAC AAAGAACAACACATTCTGGTGGGGCGTGTGTGTGTGTGCACGTGCACGTGCACATACACC TGTCTTTTGATTCCTCAAAGTTAGTGTTTTCCTTCATTCTTTAACTTTCTTCTGTTTTCC ACCCCAGATCACAGGAGAGGTAGAAAAATCAACCACTGAACATTTAGTTCCCATGACTTT TGGTAAATCACTTGTTGAGGAGCTTCCCACTTTAAGATACATATCCTTTTCCTTCAATGG TGCTATTTATAAACTAGCAAACTTTGTACTGGCTATTTTCTTTTGAGAAACACCGTCATT ACTCTGCTGAATTAATCGTGATCCCCAAATTGAGTC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGTCCGGCCAGCGGTCCCCGAGCCTGCGGTCGCACCGGAGCCGCTGCCGCCACTGCCACC GTTCACCATGGGCCTGGGTCCCCGGCTGCTACCTCTCGTGCTTTGCGTGGGGCTCAGCGC GCTCCTACCTTATGCGGGAGCCTCGGGCGTTCGCAAGCGAGGTCCCTCTGTGACGGCCAA GGTCTTCTTCGACGTGAGGATTGGAGATAAAGATGTTGGCAGAATTGTGATCGGCCTCTT TGGAAAAGTTGTGCCCAAGACAGTGGAAAATTTTATCGCTCTGGCAACAGGCGAGAGAGG ATACGGATATAAAGGAAGCAAGTTTCATCGTGTCATTAAAGATTTCATGATTCAAGGAGG AGACTTCACCCATGGAGACGGCACTGGTGGTATAAGCATTTATGGAGAGACTTTTCCAGA TGAGAACTTCAAATTGAAGCATTATGGCATTGGGTGGGTCAGCATGGCCAATGCTGGACC TGACACCAATGGCTCTCAGTTCTTTATCACCTTAACCAAGCCCACCTGGTTGGATGGCAA ACATGTAGTATTTGGAAAAGTCATCGATGGAATGACAGTGGTCCACTCCATCGAACTGCA GGCAACTGATGGGCATGACCGTCCACTCACCGACTGCTCCATCATCAACAGTGGCAAGAT AGACGTGAAAACGCCCTTCGTGGTAGAGGTTGCTGACTGGTGATCCAGCTGGCAGAAAAC AAAGAACAACACATTCTGGTGGGGCGTGTGTGTGTGTGCACGTGCACGTGCACATACACC TGTCTTTTGATTCCTCAAAGTTAGTGTTTTCCTTCATTCTTTAACTTTCTTCTGTTTTCC ACCCCAGATCACAGGAGAGGTAGAAAAATCAACCACTGAACATTTAGTTCCCATGACTTT TGGTAAATCACTTGTTGAGGAGCTTCCCACTTTAAGATACATATCCTTTTCCTTCAATGG TGCTATTTATAAACTAGCAAACTTTGTACTGGCTATTTTCTTTTGAGAAACACCGTCATT ACTCTGCTGAATTAATCGTGATCCCCAAATTGAGTC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | More info |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
| 1-183, gnl|bosTau2|chr7 (24253127-24253318) | |
| 1-183, gnl|Hg17|chr5 (122400300-122400101) | |
| 1-183, gnl|Mm7|chr18 (53798791-53798607) | |
| 236-575, gnl|bosTau2|chr10 (14393108-14393447) | |
| 236-575, gnl|canFam2|chr6 (31028356-31028099) | |
| 236-575, gnl|canFam2|chr9 (47298970-47298706) | |
| 236-575, gnl|canFam2|chr9 (47298989-47298783) | |
| 236-575, gnl|danRer3|chr13 (31730669-31730936) | |
| 236-575, gnl|danRer3|chr8 (39407053-39406720) | |
| 236-575, gnl|danRer3|chr8 (39407065-39406720) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1089-1346) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1077-1346) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1058-1264) | |
| 236-575, gnl|echTel1|scaffold_186705 (6642-6385) | |
| 236-575, gnl|echTel1|scaffold_186705 (6654-6385) | |
| 236-575, gnl|echTel1|scaffold_186705 (6673-6467) | |
| 236-575, gnl|fr1|chrUn (217324180-217324508) | |
| 236-575, gnl|fr1|chrUn (217324168-217324508) | |
| 236-575, gnl|fr1|chrUn (217324149-217324426) | |
| 236-575, gnl|hg17|chr17 (8404626-8404880) | |
| 236-575, gnl|hg17|chr2 (11442430-11442636) | |
| 236-575, gnl|Hg17|chr21 (19152037-19152376) | |
| 236-575, gnl|hg17|chr3 (44889959-44890228) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1137-885) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1149-885) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1168-975) | |
| 236-575, gnl|mm7|chr2 (51878821-51878564) | |
| 236-575, gnl|mm7|chr9 (96537399-96537668) | |
| 236-575, gnl|mm7|chr9 (96537380-96537586) | |
| 236-575, gnl|Mm7|chr9 (96537370-96537709) | |
| 236-575, gnl|monDom2|scaffold_312 (77203-76946) | |
| 236-575, gnl|monDom2|scaffold_312 (77215-76946) | |
| 236-575, gnl|monDom2|scaffold_312 (77234-77028) | |
| 236-575, gnl|oryCun1|scaffold_173019 (891-635) | |
| 236-575, gnl|oryCun1|scaffold_177612 (55478-55747) | |
| 236-575, gnl|oryCun1|scaffold_177612 (55459-55665) | |
| 236-575, gnl|panTro1|chr12 (12159429-12159635) | |
| 236-575, gnl|panTro1|chr19_random (30048128-30047874) | |
| 236-575, gnl|panTro1|chr2 (46208541-46208810) | |
| 236-575, gnl|rheMac2|chr12 (33484166-33483960) | |
| 236-575, gnl|rheMac2|chr16 (8333651-8333906) | |
| 236-575, gnl|rheMac2|chr2 (91659048-91658781) | |
| 236-575, gnl|rn3|chr4_random (278172-277915) | |
| 236-575, gnl|rn3|chr4_random (278184-277915) | |
| 236-575, gnl|rn3|chr4_random (278203-277997) | |
| 236-575, gnl|tetNig1|chr12 (12415750-12416029) | |
| 236-575, gnl|tetNig1|chrUn_random (755744-755379) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715046-1715303) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715034-1715303) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715015-1715221) | |
| 788-1055, gnl|bosTau2|chr7 (24266373-24266644) | |
| 788-1055, gnl|canFam2|chr11 (15886991-15887337) | |
| 788-1055, gnl|dasNov1|scaffold_778 (177772-177426) | |
| 788-1055, gnl|echTel1|scaffold_309243 (3420-3079) | |
| 788-1055, gnl|hg17|chr5 (122386989-122387317) | |
| 788-1055, gnl|Hg17|chr5 (122387413-122387143) | |
| 788-1055, gnl|loxAfr1|scaffold_54502 (23268-23608) | |
| 788-1055, gnl|mm7|chr18 (53787118-53787435) | |
| 788-1055, gnl|Mm7|chr18 (53787654-53787268) | |
| 788-1055, gnl|oryCun1|scaffold_201071 (64467-64814) | |
| 788-1055, gnl|panTro1|chr4 (128655138-128655472) | |
| 788-1055, gnl|rheMac2|chr6 (119429735-119430070) | |
| 788-1055, gnl|rn3|chr18 (48924184-48924485) |
| Aligned organism(s): 63 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-183, gnl|bosTau2|chr7 (24253127-24253318) | |
| 1-183, gnl|Hg17|chr5 (122400300-122400101) | |
| 1-183, gnl|Mm7|chr18 (53798791-53798607) | |
| 236-575, gnl|bosTau2|chr10 (14393108-14393447) | |
| 236-575, gnl|canFam2|chr6 (31028356-31028099) | |
| 236-575, gnl|canFam2|chr9 (47298970-47298706) | |
| 236-575, gnl|canFam2|chr9 (47298989-47298783) | |
| 236-575, gnl|danRer3|chr13 (31730669-31730936) | |
| 236-575, gnl|danRer3|chr8 (39407053-39406720) | |
| 236-575, gnl|danRer3|chr8 (39407065-39406720) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1089-1346) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1077-1346) | |
| 236-575, gnl|dasNov1|scaffold_261643 (1058-1264) | |
| 236-575, gnl|echTel1|scaffold_186705 (6642-6385) | |
| 236-575, gnl|echTel1|scaffold_186705 (6654-6385) | |
| 236-575, gnl|echTel1|scaffold_186705 (6673-6467) | |
| 236-575, gnl|fr1|chrUn (217324180-217324508) | |
| 236-575, gnl|fr1|chrUn (217324168-217324508) | |
| 236-575, gnl|fr1|chrUn (217324149-217324426) | |
| 236-575, gnl|hg17|chr17 (8404626-8404880) | |
| 236-575, gnl|hg17|chr2 (11442430-11442636) | |
| 236-575, gnl|Hg17|chr21 (19152037-19152376) | |
| 236-575, gnl|hg17|chr3 (44889959-44890228) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1137-885) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1149-885) | |
| 236-575, gnl|loxAfr1|scaffold_6995 (1168-975) | |
| 236-575, gnl|mm7|chr2 (51878821-51878564) | |
| 236-575, gnl|mm7|chr9 (96537399-96537668) | |
| 236-575, gnl|mm7|chr9 (96537380-96537586) | |
| 236-575, gnl|Mm7|chr9 (96537370-96537709) | |
| 236-575, gnl|monDom2|scaffold_312 (77203-76946) | |
| 236-575, gnl|monDom2|scaffold_312 (77215-76946) | |
| 236-575, gnl|monDom2|scaffold_312 (77234-77028) | |
| 236-575, gnl|oryCun1|scaffold_173019 (891-635) | |
| 236-575, gnl|oryCun1|scaffold_177612 (55478-55747) | |
| 236-575, gnl|oryCun1|scaffold_177612 (55459-55665) | |
| 236-575, gnl|panTro1|chr12 (12159429-12159635) | |
| 236-575, gnl|panTro1|chr19_random (30048128-30047874) | |
| 236-575, gnl|panTro1|chr2 (46208541-46208810) | |
| 236-575, gnl|rheMac2|chr12 (33484166-33483960) | |
| 236-575, gnl|rheMac2|chr16 (8333651-8333906) | |
| 236-575, gnl|rheMac2|chr2 (91659048-91658781) | |
| 236-575, gnl|rn3|chr4_random (278172-277915) | |
| 236-575, gnl|rn3|chr4_random (278184-277915) | |
| 236-575, gnl|rn3|chr4_random (278203-277997) | |
| 236-575, gnl|tetNig1|chr12 (12415750-12416029) | |
| 236-575, gnl|tetNig1|chrUn_random (755744-755379) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715046-1715303) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715034-1715303) | |
| 236-575, gnl|xenTro1|scaffold_143 (1715015-1715221) | |
| 788-1055, gnl|bosTau2|chr7 (24266373-24266644) | |
| 788-1055, gnl|canFam2|chr11 (15886991-15887337) | |
| 788-1055, gnl|dasNov1|scaffold_778 (177772-177426) | |
| 788-1055, gnl|echTel1|scaffold_309243 (3420-3079) | |
| 788-1055, gnl|hg17|chr5 (122386989-122387317) | |
| 788-1055, gnl|Hg17|chr5 (122387413-122387143) | |
| 788-1055, gnl|loxAfr1|scaffold_54502 (23268-23608) | |
| 788-1055, gnl|mm7|chr18 (53787118-53787435) | |
| 788-1055, gnl|Mm7|chr18 (53787654-53787268) | |
| 788-1055, gnl|oryCun1|scaffold_201071 (64467-64814) | |
| 788-1055, gnl|panTro1|chr4 (128655138-128655472) | |
| 788-1055, gnl|rheMac2|chr6 (119429735-119430070) | |
| 788-1055, gnl|rn3|chr18 (48924184-48924485) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| jca (0.45584) | |
| eep (0.367692) | |
| clu (0.239292) | |
| hea (0.204499) | |
| rec (0.17307) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| eru (0.120048) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| jca (0.45584) | |
| eep (0.367692) | |
| clu (0.239292) | |
| hea (0.204499) | |
| rec (0.17307) | |
| mga (0.160205) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| che (0.136314) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| eru (0.120048) |