Non-Coding RNA Search

Ss1.1-Pig4-TMW8044K12.3

Sequence:


               
               CTGTTTTCATGCCAGCATAATAGTTGTATGGACTCCTACCAGTTGAGGTTTTTAAAGCTT
TGAGGATTTTTTTTCCTCTTACCAACTCCTCTTCAGGTTTTTAAAAGACCCAACCCATAT
CAGTCTCAATGAGAAAAAAAGATACCTGAGTATCCTGAATAGCAGAATTTTTAAATCAAA
TGTTTATTTTGCTTGTAAATCTTGGTGTTAATTAAAAATTGAGTTGATGGTAATTGCAAG
TTTCATCTATTAAGTAATACATGGTACACAATCTGTCTTCACAGGTCATTAGTCCTCATT
TTAATATGTGAAAAATCTTGATGCTATATTGATTTGTTTGCATTTAATGTGACTTTGAGT
GAGAAAAGGATAAACATAATGAAAAGGATCAGGTCATTTGCTTTTTCCAATCTTATTACT
TCTCAGATGAGCTAATGTTTAGTAGAAAAGACTGAGCAAATACTGCAAAATTTAACCTTG
ATTTCATTGGTTTAAGCTACAGGCATCATTAACCATCATAAATGCAAACTAATCATTGTA
AATTATATTTTAGCATGGTCTGCCTCAAATAGTAATGTATTTTTCTGCATTTACTTGGGT
CTGTTTAGAATCATTTTTTTTCCTATTGTATCACAGACAGAAGAGGTATGTACTGATTTG
TACAGATATTTGACAAAGCCACTGATGTCCTTTCCCTGACTACTGCCTTCATATTTCATT
TTGAGTTCAAACTTCTGAGGTTGCAGCATAGATGAATTGCATTTTCAAAAGGAGATTTGT
AAGAATTAAACTATATTTAATGAGTAAACTTTTGAGATTTCTGCTGTATTGTTTCAAATG
TAATAAACTTTACCTCTGTAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTTTTCATGCCAGCATAATAGTTGTATGGACTCCTACCAGTTGAGGTTTTTAAAGCTT
TGAGGATTTTTTTTCCTCTTACCAACTCCTCTTCAGGTTTTTAAAAGACCCAACCCATAT
CAGTCTCAATGAGAAAAAAAGATACCTGAGTATCCTGAATAGCAGAATTTTTAAATCAAA
TGTTTATTTTGCTTGTAAATCTTGGTGTTAATTAAAAATTGAGTTGATGGTAATTGCAAG
TTTCATCTATTAAGTAATACATGGTACACAATCTGTCTTCACAGGTCATTAGTCCTCATT
TTAATATGTGAAAAATCTTGATGCTATATTGATTTGTTTGCATTTAATGTGACTTTGAGT
GAGAAAAGGATAAACATAATGAAAAGGATCAGGTCATTTGCTTTTTCCAATCTTATTACT
TCTCAGATGAGCTAATGTTTAGTAGAAAAGACTGAGCAAATACTGCAAAATTTAACCTTG
ATTTCATTGGTTTAAGCTACAGGCATCATTAACCATCATAAATGCAAACTAATCATTGTA
AATTATATTTTAGCATGGTCTGCCTCAAATAGTAATGTATTTTTCTGCATTTACTTGGGT
CTGTTTAGAATCATTTTTTTTCCTATTGTATCACAGACAGAAGAGGTATGTACTGATTTG
TACAGATATTTGACAAAGCCACTGATGTCCTTTCCCTGACTACTGCCTTCATATTTCATT
TTGAGTTCAAACTTCTGAGGTTGCAGCATAGATGAATTGCATTTTCAAAAGGAGATTTGT
AAGAATTAAACTATATTTAATGAGTAAACTTTTGAGATTTCTGCTGTATTGTTTCAAATG
TAATAAACTTTACCTCTGTAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-864, gnl|bosTau2|chr3 (12351757-12350892)
               

               
               1-864, gnl|Hg17|chr12 (99235547-99236385)
               

               
               1-864, gnl|Mm7|chr10 (89199111-89198305)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-864, gnl|bosTau2|chr3 (12351757-12350892)
               

               
               1-864, gnl|Hg17|chr12 (99235547-99236385)
               

               
               1-864, gnl|Mm7|chr10 (89199111-89198305)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

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               vin (0.332557)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               mgp (0.230681)
               

               
               fco (0.157208)
               

               
               lun (0.150489)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               kid (0.129735)
               

               
               tra (0.123092)
               

               
               clu (0.119646)

	1-864, gnl\|bosTau2\|chr3 (12351757-12350892)
	1-864, gnl\|Hg17\|chr12 (99235547-99236385)
	1-864, gnl\|Mm7\|chr10 (89199111-89198305)

	vin (0.332557)
	liv (0.292569)
	mgp (0.230681)
	fco (0.157208)
	lun (0.150489)
	ski (0.146735)
	lin (0.145603)
	kid (0.129735)
	tra (0.123092)
	clu (0.119646)