Non-Coding RNA Search

Ss1.1-Pig4-TMW8044K20.5

Sequence:


               
               GCTGAATATTTAGCTTCGATATTCGGGACTGAGAAGGACAAGGTTAACTGCTCTTTTTAC
TTTAAGATCGGGGCCTGCCGGCACGGGGACCGGTGCTCCCGGCTTCACAACAAACCGACT
TTCAGCCAGACCATAGTGCTGCTCAACCTGTACCGGAATCCACAGAACACTGCCCAAACC
GCAGACGGATCGCACTGTCACGTGAGCGATGTGGAGGTGCAAGAACACTATGATAACTTC
TTCGAGGAAGTGTTCACGGAACTGCAGGAGAAGTACGGGGAGATTGAAGAGATGAATGTG
TGCGACAACTTGGGGGATCACCTCGTGGGCAATGTTTATGTCAAGTTTCGGCGGGAGGAG
GATGCAGAGCGGGCAGTGGCTGAACTCAATAACCGCTGGTTCAATGGGCAGGCTGTGCAT
GCCGAGCTGTCTCCAGTCACTGACTTCCGGGAATCATGCTGTCGACAGTATGAGATGGGG
GAATGCACCCGCGGTGGTTTCTGCAACTTCATGCACCTGCGACCCATCTCCCGCAACCTT
CGACGGCAGCTCTATGGGCGGGGACCCAGGCGCAGGTCACCCCCAAGGTCCCATGCTGGC
GAAAGAAATCGGCGACGGTCCCCAGACCACCGGCATGGCCGTTTCTGAGACCCTGACCCT
CCTGCCCTCTGCCCCTGGCAGGCACAGATGTTCCTGGCCAGGACCCCTCTTCAAAGGTCT
CTTAACTCCCCAGCACCATCTTCTCCAGGCTCCGGGTCTCCGTGATGTAATATGTTCAAC
ACAGGGACCTTCTCCTACCACCCTTCCTCTAATAAAGTTCTGTATTGAGGGTTTAAAAAA
GGGTTTAGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTGAATATTTAGCTTCGATATTCGGGACTGAGAAGGACAAGGTTAACTGCTCTTTTTAC
TTTAAGATCGGGGCCTGCCGGCACGGGGACCGGTGCTCCCGGCTTCACAACAAACCGACT
TTCAGCCAGACCATAGTGCTGCTCAACCTGTACCGGAATCCACAGAACACTGCCCAAACC
GCAGACGGATCGCACTGTCACGTGAGCGATGTGGAGGTGCAAGAACACTATGATAACTTC
TTCGAGGAAGTGTTCACGGAACTGCAGGAGAAGTACGGGGAGATTGAAGAGATGAATGTG
TGCGACAACTTGGGGGATCACCTCGTGGGCAATGTTTATGTCAAGTTTCGGCGGGAGGAG
GATGCAGAGCGGGCAGTGGCTGAACTCAATAACCGCTGGTTCAATGGGCAGGCTGTGCAT
GCCGAGCTGTCTCCAGTCACTGACTTCCGGGAATCATGCTGTCGACAGTATGAGATGGGG
GAATGCACCCGCGGTGGTTTCTGCAACTTCATGCACCTGCGACCCATCTCCCGCAACCTT
CGACGGCAGCTCTATGGGCGGGGACCCAGGCGCAGGTCACCCCCAAGGTCCCATGCTGGC
GAAAGAAATCGGCGACGGTCCCCAGACCACCGGCATGGCCGTTTCTGAGACCCTGACCCT
CCTGCCCTCTGCCCCTGGCAGGCACAGATGTTCCTGGCCAGGACCCCTCTTCAAAGGTCT
CTTAACTCCCCAGCACCATCTTCTCCAGGCTCCGGGTCTCCGTGATGTAATATGTTCAAC
ACAGGGACCTTCTCCTACCACCCTTCCTCTAATAAAGTTCTGTATTGAGGGTTTAAAAAA
GGGTTTAGAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               Q8BGJ9_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8BGJ9_MOUSE

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               304-577, gnl|bosTau2|chr11 (23470101-23470369)
               

               
               304-577, gnl|Hg17|chr19 (40927105-40926548)
               

               
               304-577, gnl|Mm7|chr10 (27651042-27651315)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               304-577, gnl|bosTau2|chr11 (23470101-23470369)
               

               
               304-577, gnl|Hg17|chr19 (40927105-40926548)
               

               
               304-577, gnl|Mm7|chr10 (27651042-27651315)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

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               che (0.545256)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cst (0.280073)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.545256)
               

               
               hea (0.408998)
               

               
               elu (0.385356)
               

               
               nlu (0.383362)
               

               
               fhi (0.339155)
               

               
               cki (0.330469)
               

               
               cst (0.280073)
               

               
               nep (0.183925)
               

               
               cje (0.165235)
               

               
               cag (0.151194)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               sug (0.127291)
               

               
               eru (0.120048)
               

               
               jej (0.0989218)

	304-577, gnl\|bosTau2\|chr11 (23470101-23470369)
	304-577, gnl\|Hg17\|chr19 (40927105-40926548)
	304-577, gnl\|Mm7\|chr10 (27651042-27651315)

	che (0.545256)
	hea (0.408998)
	elu (0.385356)
	nlu (0.383362)
	fhi (0.339155)
	cki (0.330469)
	cst (0.280073)
	nep (0.183925)
	cje (0.165235)
	cag (0.151194)
	hyp (0.142837)
	pty (0.142714)
	sug (0.127291)
	eru (0.120048)
	jej (0.0989218)