Non-Coding RNA Search

Ss1.1-Pig4-TMW8044K21.5

Sequence:


               
               CTGCAGCTCTATCTTTCCAACTTGGCCAACCAGATAGATCGGGAGACAGGGATTGGGGAC
GTCCCCCTGGTGATCCTGCTGGATGACCTCAGCGAAGCAGGCTCCATCAGCGAGCTGGTC
AACGGAGCCCTTACCTGCAAGTATCACAAATGTCCCTACATTATAGGTACCACTAATCAG
CCTGTAAAAATGACACCCAATCACGGCTTGCACCTGAGCTTCAGGATGCTGACATTCTCC
AACAACGTGGAGCCCGCCAACGGCTTCCTGGTTCGCTACCTGCGGAGGAAGCTGGTGGAG
TCAGACAGCGACATCAACGCCAACAGGGAGGAGCTGCTGCGGGTGCTGGACTGGGTGCCC
AAGCTGTGGTACCACCTGCACACCTTCCTAGAGAAGCACAGCACCTCGGACTTCCTCATC
GGGCCCTGCTTCTTTCTGTCCTGCCCCATCGGCATCGAGGACTTCCGGACCTGGTTCATC
GACCTGTGGAACAACTCCATTATCCCCTACCTGCAGGAAGGGGCCAAGGATGGCATCAAG
GTTCACGGGCAGAAAGCTGCTTGGGAGGACCCGGTGGAGTGGGTCCGGGACACCCTTCCC
TGGCCGTCAGCCCAACAAGACCAGTCAAAGCTGTACCATCTGCCCCCACCCACTGTCGGC
CCTCACAGCATGGCCTCACCCCCCGAGGACAGGACGGTCAAGGACAGCACCCCAAGTTCC
CTGGACTCAGACCCTCTGATGGCCATGCTGCTGAAACTTCAGGAAGCTGCCAATTATATC
GAGTCTCCAGACCGAGAAGGCATCCTAGACCCCAACCTCCAGGCAACGCTTTGAGGCCTG
GTGGCCAATCACCCAGACAGTGGGCCACGGACACCAGCCTCGGGCCGCCTCCCTGCCCCC
GCTTGCTCCAGAGCGGCCGTGAGGACAGGAGGGGGAGGCGGAAGGAGGGGCGGGTTCCCG
GTGCTGCACCTTCAAGAACTCCTAGTGGGACTGGTGGGTGGAATCGGGGAACTTGCGTCC
CCAGATGCATCTCCTGGCCTCTGCTCATGACTTTGGGGAAAAGATGATTCTGGGTCTTTT
CCCTTGATTTCTGGTCTCAGTCACAAACTCCTGGGCTTTCTGGGGAGGGGTTCAGGAGAC
ATAGGACCAACCTGCAGTCGTTCCTAACTGACTCTTGCAAACAGCCCTATGGGGGTGTGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGCTCTATCTTTCCAACTTGGCCAACCAGATAGATCGGGAGACAGGGATTGGGGAC
GTCCCCCTGGTGATCCTGCTGGATGACCTCAGCGAAGCAGGCTCCATCAGCGAGCTGGTC
AACGGAGCCCTTACCTGCAAGTATCACAAATGTCCCTACATTATAGGTACCACTAATCAG
CCTGTAAAAATGACACCCAATCACGGCTTGCACCTGAGCTTCAGGATGCTGACATTCTCC
AACAACGTGGAGCCCGCCAACGGCTTCCTGGTTCGCTACCTGCGGAGGAAGCTGGTGGAG
TCAGACAGCGACATCAACGCCAACAGGGAGGAGCTGCTGCGGGTGCTGGACTGGGTGCCC
AAGCTGTGGTACCACCTGCACACCTTCCTAGAGAAGCACAGCACCTCGGACTTCCTCATC
GGGCCCTGCTTCTTTCTGTCCTGCCCCATCGGCATCGAGGACTTCCGGACCTGGTTCATC
GACCTGTGGAACAACTCCATTATCCCCTACCTGCAGGAAGGGGCCAAGGATGGCATCAAG
GTTCACGGGCAGAAAGCTGCTTGGGAGGACCCGGTGGAGTGGGTCCGGGACACCCTTCCC
TGGCCGTCAGCCCAACAAGACCAGTCAAAGCTGTACCATCTGCCCCCACCCACTGTCGGC
CCTCACAGCATGGCCTCACCCCCCGAGGACAGGACGGTCAAGGACAGCACCCCAAGTTCC
CTGGACTCAGACCCTCTGATGGCCATGCTGCTGAAACTTCAGGAAGCTGCCAATTATATC
GAGTCTCCAGACCGAGAAGGCATCCTAGACCCCAACCTCCAGGCAACGCTTTGAGGCCTG
GTGGCCAATCACCCAGACAGTGGGCCACGGACACCAGCCTCGGGCCGCCTCCCTGCCCCC
GCTTGCTCCAGAGCGGCCGTGAGGACAGGAGGGGGAGGCGGAAGGAGGGGCGGGTTCCCG
GTGCTGCACCTTCAAGAACTCCTAGTGGGACTGGTGGGTGGAATCGGGGAACTTGCGTCC
CCAGATGCATCTCCTGGCCTCTGCTCATGACTTTGGGGAAAAGATGATTCTGGGTCTTTT
CCCTTGATTTCTGGTCTCAGTCACAAACTCCTGGGCTTTCTGGGGAGGGGTTCAGGAGAC
ATAGGACCAACCTGCAGTCGTTCCTAACTGACTCTTGCAAACAGCCCTATGGGGGTGTGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|52626652|emb|CAH56487.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|52626652|emb|CAH56487.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               873-1042, + strand, RNAz p=0.976111

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               873-1042, + strand, RNAz p=0.976111

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of BC007523, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC007523, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               726-1165, gnl|bosTau2|chr16 (48712475-48712036)
               

               
               726-1165, gnl|Hg17|chr1 (198520606-198521078)
               

               
               726-1165, gnl|Mm7|chr1 (135331585-135331087)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               726-1165, gnl|bosTau2|chr16 (48712475-48712036)
               

               
               726-1165, gnl|Hg17|chr1 (198520606-198521078)
               

               
               726-1165, gnl|Mm7|chr1 (135331585-135331087)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               mcp (0.170648)
               

               
               eye (0.170503)
               

               
               nmm (0.132802)

	726-1165, gnl\|bosTau2\|chr16 (48712475-48712036)
	726-1165, gnl\|Hg17\|chr1 (198520606-198521078)
	726-1165, gnl\|Mm7\|chr1 (135331585-135331087)