Non-Coding RNA Search

Ss1.1-Pig4-TMW8044K24.3

Sequence:


               
               CACTGGCCTAGAGTAACACAGTGCGTGCTGAGCTGGGCAGCTGGTCCCAGGCTGGTGTGG
CCTAATGGGGCACAGAGCCGGTGCTCCACATCCAGGCTGGGATCTCATCTCACAATCAAT
ACTGTGTACGTTAAGATCCGCGAAAGACCAACTTTTAGGCCAAGGTACTTTTCTCCCATT
CCCTGGGGGGAGAGTGTGCAGTTGGTGCTTTCTTTAATTCCCTCGTTGTGTTTTGCTTCT
GTTGGCTTCGCCCCCGGGATCATGGAAAGGGCCTCCGAAGCACCACACTGGGGCTGGCTA
TATCCCAGGTCAAAGGAACTGGCGGAGGTGTGGAGTGTCCTCTCCCAGATTCAAGCAAGG
GGAGGGCTCCTGACCACAACTGAACTTACTATATAAAAAACTGGCTGGGGAGAAAGGCTT
AATTCTACTAAAATCAAAGTTAATACCACCATCTTGCCACAAATTGAGCCGCAAGGGCTA
TATATTTTGACTATGAAGGGAGCACCCCCGAGTAGCCCATCTAGCACAGCGCACTCTCAG
ATCAGGTGCCTGTTCATTGTGTGTCTTCACGAGCCCCTCTCTGGTGCTGAATTGGATTTT
ACTTCTTGGTGAGAAGCCTCAGCACCTCCTTGGGCTGGTCTGGGCCAGTAAATAGCTGCC
TGAAGTGTTTATATTTTATCATGGTCAATAGTTCAGTGAAATGTGTACATTTTTGGTAAC
ATGGGCATACATAATGCCCCTGCAATTCCTTTTCTGTTTGGTAGTTTGTGACTCTAAAAT
TCCCACTGTTATGTGTGTTAATTTATGAAAATAAAAAAAAAAATTGGGGGGGACCTCTCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CACTGGCCTAGAGTAACACAGTGCGTGCTGAGCTGGGCAGCTGGTCCCAGGCTGGTGTGG
CCTAATGGGGCACAGAGCCGGTGCTCCACATCCAGGCTGGGATCTCATCTCACAATCAAT
ACTGTGTACGTTAAGATCCGCGAAAGACCAACTTTTAGGCCAAGGTACTTTTCTCCCATT
CCCTGGGGGGAGAGTGTGCAGTTGGTGCTTTCTTTAATTCCCTCGTTGTGTTTTGCTTCT
GTTGGCTTCGCCCCCGGGATCATGGAAAGGGCCTCCGAAGCACCACACTGGGGCTGGCTA
TATCCCAGGTCAAAGGAACTGGCGGAGGTGTGGAGTGTCCTCTCCCAGATTCAAGCAAGG
GGAGGGCTCCTGACCACAACTGAACTTACTATATAAAAAACTGGCTGGGGAGAAAGGCTT
AATTCTACTAAAATCAAAGTTAATACCACCATCTTGCCACAAATTGAGCCGCAAGGGCTA
TATATTTTGACTATGAAGGGAGCACCCCCGAGTAGCCCATCTAGCACAGCGCACTCTCAG
ATCAGGTGCCTGTTCATTGTGTGTCTTCACGAGCCCCTCTCTGGTGCTGAATTGGATTTT
ACTTCTTGGTGAGAAGCCTCAGCACCTCCTTGGGCTGGTCTGGGCCAGTAAATAGCTGCC
TGAAGTGTTTATATTTTATCATGGTCAATAGTTCAGTGAAATGTGTACATTTTTGGTAAC
ATGGGCATACATAATGCCCCTGCAATTCCTTTTCTGTTTGGTAGTTTGTGACTCTAAAAT
TCCCACTGTTATGTGTGTTAATTTATGAAAATAAAAAAAAAAATTGGGGGGGACCTCTCA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               627-777, - strand, RNAz p=0.879762

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               627-777, - strand, RNAz p=0.879762

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BX647272, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BX647272, -

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               5-817, gnl|bosTau2|chr17 (43237603-43236803)
               

               
               5-817, gnl|canFam2|chr26 (27597944-27598532)
               

               
               5-817, gnl|dasNov1|scaffold_125392 (4778-4185)
               

               
               5-817, gnl|echTel1|scaffold_194546 (13787-14352)
               

               
               5-817, gnl|galGal2|chr15 (8845286-8844691)
               

               
               5-817, gnl|hg17|chr22 (30401902-30402489)
               

               
               5-817, gnl|Hg17|chr22 (30402721-30401908)
               

               
               5-817, gnl|loxAfr1|scaffold_74284 (6434-5881)
               

               
               5-817, gnl|mm7|chr5 (31852585-31853147)
               

               
               5-817, gnl|Mm7|chr5 (31853368-31852591)
               

               
               5-817, gnl|monDom2|scaffold_141 (562391-563022)
               

               
               5-817, gnl|oryCun1|scaffold_178309 (45174-45766)
               

               
               5-817, gnl|panTro1|chr23 (30505298-30505884)
               

               
               5-817, gnl|rheMac2|chr10 (75576230-75576817)
               

               
               5-817, gnl|rn3|chr14 (83697219-83696657)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-817, gnl|bosTau2|chr17 (43237603-43236803)
               

               
               5-817, gnl|canFam2|chr26 (27597944-27598532)
               

               
               5-817, gnl|dasNov1|scaffold_125392 (4778-4185)
               

               
               5-817, gnl|echTel1|scaffold_194546 (13787-14352)
               

               
               5-817, gnl|galGal2|chr15 (8845286-8844691)
               

               
               5-817, gnl|hg17|chr22 (30401902-30402489)
               

               
               5-817, gnl|Hg17|chr22 (30402721-30401908)
               

               
               5-817, gnl|loxAfr1|scaffold_74284 (6434-5881)
               

               
               5-817, gnl|mm7|chr5 (31852585-31853147)
               

               
               5-817, gnl|Mm7|chr5 (31853368-31852591)
               

               
               5-817, gnl|monDom2|scaffold_141 (562391-563022)
               

               
               5-817, gnl|oryCun1|scaffold_178309 (45174-45766)
               

               
               5-817, gnl|panTro1|chr23 (30505298-30505884)
               

               
               5-817, gnl|rheMac2|chr10 (75576230-75576817)
               

               
               5-817, gnl|rn3|chr14 (83697219-83696657)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               col (0.195008)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               col (0.195008)
               

               
               cly (0.120642)
               

               
               jej (0.0989218)

	5-817, gnl\|bosTau2\|chr17 (43237603-43236803)
	5-817, gnl\|canFam2\|chr26 (27597944-27598532)
	5-817, gnl\|dasNov1\|scaffold_125392 (4778-4185)
	5-817, gnl\|echTel1\|scaffold_194546 (13787-14352)
	5-817, gnl\|galGal2\|chr15 (8845286-8844691)
	5-817, gnl\|hg17\|chr22 (30401902-30402489)
	5-817, gnl\|Hg17\|chr22 (30402721-30401908)
	5-817, gnl\|loxAfr1\|scaffold_74284 (6434-5881)
	5-817, gnl\|mm7\|chr5 (31852585-31853147)
	5-817, gnl\|Mm7\|chr5 (31853368-31852591)
	5-817, gnl\|monDom2\|scaffold_141 (562391-563022)
	5-817, gnl\|oryCun1\|scaffold_178309 (45174-45766)
	5-817, gnl\|panTro1\|chr23 (30505298-30505884)
	5-817, gnl\|rheMac2\|chr10 (75576230-75576817)
	5-817, gnl\|rn3\|chr14 (83697219-83696657)