Ss1.1-Pig4-TMW8044L03.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGGTTCCCACTCTACAACTTGGGCTTCGGCCATGATGTGGATTGGAACTTCCTGGAGGTT ATGGCCCTGGAGAACAACGGACGTGCCCAGAGAATCTACGAGGACCATGATGCTGCTCAG CAGCTGCAGGGCTTCTACGACCAGGTTGCCAACCCCCTCCTGAAGGATGTGGAGTTGCAG TACCCCGCGGATGCCGTCCTGGCTCTTACCCAGCATCGCCACAAACAGTACTACGAAGGC TCAGAGATCACAGTAGCGGGGCGGATCGCTGACAACAAACTGAGCAGCTTCAAAGCGGAC GTGCAGGCCTCTGGGGACCAAGGATTCAAGACAACCTGTCTGGTGGATGAGGAAGAGATG AAGAAACTGCTCCAAGAGAGGGGCCACATGCTGGAGAACTATGTCGAACGCCTGTGGGCC TACCTCACCATCCAGGAGCTGCTGGCCAAGAGGATGAAGTTGGAGGGGGCGGAGAAGGCC AGTGTTTCGGCCAAGGCCCTGCAGATGTCACTGGACTATCAGTTCGTGACCCCGCTGACC TCCATGACCATCAGGGGCATGGCAGACAAGGACGGGCTGGAGCCGGTCATCGACAAGCCT CTGGAGGATTCTCAGCCCTTGGAGATGCTGGGACCCAGAAGGAAGTTCGTGCTGTCCGCC TCACAGCCTTCTCCGACACACCCCAGCTCCAGCATCCAGAAGCTGCCAGACCGAGTGACT GGCGTGGACACTGACCCCCACTTCATCATCCGCGTGCCCCAGAAAGAGGACACCCTGTGC TTCAATATCAACGAGGAGCCTGGTGTGGTTCTGAGCCTGGTGCAGGATCCTGACACAGGC TTCTCAGTGAATGGGCAGCTCATCGGCAACGAGGCCAGGAGCCCGGGGAAGCATGAGGGC ACCTACTTCGGGCGGCTGGGGATCGCGAACCCCGCAACAGGCTTTCAGCTGGAAGTGACT CCACAGAACATTACGCTGAACCCTGGCTCTGGTGGGCCTGTGTTCTCCTGGAGGGACCAG GCTTCACTGCGGCAGGACGAGGTGGTGGTGACCATCAACAGGAAGAGGAACCTGGTGGTG TCCGTGGAGGACGGGGGCACCTTCGAGGTGGTCCTGCACCGGGTGTGGAAGGGGAGTGCC ATCCACCAGGACTTCCTGGGCTTTTACGTGCTGGATAGTCACCGGATGTCAGCACGGACA CATGGACTGCTGGGACAATTCTTCCACCCCTTTGATTATCAAGTGTCTGACCTCCACCCA GGCTCTGACCCCACAAAGACAGACGCCACAATGGTGGTGAAGAACCGCCGGCTGACAGTC ACCAGGGGCTTGCAAAAAGACTACAGCAAGGATCCCCGGCACGGGGCCGAGGTGACCTGC TGGTTCATCCACAATAATGGAGATGGGCTGATTGATGGCGTTCACACTGACTATATCGTC CCCGACATCTTCTGAGCCTCCAGCCAGCGCTCCTGTCCTTCCATGGGGCCATGACAGAGA AGGAGGACAGCATCCTGACCTGCTGCTCAAGCGACACCTCCCTGTCCAAGCTGGTCCCCT ACGTCAAAGCACTCGTGACTTCATTAAAGAGAGGCTATGTTCAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGGTTCCCACTCTACAACTTGGGCTTCGGCCATGATGTGGATTGGAACTTCCTGGAGGTT ATGGCCCTGGAGAACAACGGACGTGCCCAGAGAATCTACGAGGACCATGATGCTGCTCAG CAGCTGCAGGGCTTCTACGACCAGGTTGCCAACCCCCTCCTGAAGGATGTGGAGTTGCAG TACCCCGCGGATGCCGTCCTGGCTCTTACCCAGCATCGCCACAAACAGTACTACGAAGGC TCAGAGATCACAGTAGCGGGGCGGATCGCTGACAACAAACTGAGCAGCTTCAAAGCGGAC GTGCAGGCCTCTGGGGACCAAGGATTCAAGACAACCTGTCTGGTGGATGAGGAAGAGATG AAGAAACTGCTCCAAGAGAGGGGCCACATGCTGGAGAACTATGTCGAACGCCTGTGGGCC TACCTCACCATCCAGGAGCTGCTGGCCAAGAGGATGAAGTTGGAGGGGGCGGAGAAGGCC AGTGTTTCGGCCAAGGCCCTGCAGATGTCACTGGACTATCAGTTCGTGACCCCGCTGACC TCCATGACCATCAGGGGCATGGCAGACAAGGACGGGCTGGAGCCGGTCATCGACAAGCCT CTGGAGGATTCTCAGCCCTTGGAGATGCTGGGACCCAGAAGGAAGTTCGTGCTGTCCGCC TCACAGCCTTCTCCGACACACCCCAGCTCCAGCATCCAGAAGCTGCCAGACCGAGTGACT GGCGTGGACACTGACCCCCACTTCATCATCCGCGTGCCCCAGAAAGAGGACACCCTGTGC TTCAATATCAACGAGGAGCCTGGTGTGGTTCTGAGCCTGGTGCAGGATCCTGACACAGGC TTCTCAGTGAATGGGCAGCTCATCGGCAACGAGGCCAGGAGCCCGGGGAAGCATGAGGGC ACCTACTTCGGGCGGCTGGGGATCGCGAACCCCGCAACAGGCTTTCAGCTGGAAGTGACT CCACAGAACATTACGCTGAACCCTGGCTCTGGTGGGCCTGTGTTCTCCTGGAGGGACCAG GCTTCACTGCGGCAGGACGAGGTGGTGGTGACCATCAACAGGAAGAGGAACCTGGTGGTG TCCGTGGAGGACGGGGGCACCTTCGAGGTGGTCCTGCACCGGGTGTGGAAGGGGAGTGCC ATCCACCAGGACTTCCTGGGCTTTTACGTGCTGGATAGTCACCGGATGTCAGCACGGACA CATGGACTGCTGGGACAATTCTTCCACCCCTTTGATTATCAAGTGTCTGACCTCCACCCA GGCTCTGACCCCACAAAGACAGACGCCACAATGGTGGTGAAGAACCGCCGGCTGACAGTC ACCAGGGGCTTGCAAAAAGACTACAGCAAGGATCCCCGGCACGGGGCCGAGGTGACCTGC TGGTTCATCCACAATAATGGAGATGGGCTGATTGATGGCGTTCACACTGACTATATCGTC CCCGACATCTTCTGAGCCTCCAGCCAGCGCTCCTGTCCTTCCATGGGGCCATGACAGAGA AGGAGGACAGCATCCTGACCTGCTGCTCAAGCGACACCTCCCTGTCCAAGCTGGTCCCCT ACGTCAAAGCACTCGTGACTTCATTAAAGAGAGGCTATGTTCAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 124-304, gnl|bosTau2|chr22 (42347411-42347231) | |
| 124-304, gnl|canFam2|chr20 (40040307-40040081) | |
| 124-304, gnl|danRer3|chrUn (126789993-126790220) | |
| 124-304, gnl|dasNov1|scaffold_124408 (1739-1934) | |
| 124-304, gnl|echTel1|scaffold_203452 (3952-4164) | |
| 124-304, gnl|fr1|chrUn (303261841-303262044) | |
| 124-304, gnl|hg17|chr3 (52794068-52794292) | |
| 124-304, gnl|Hg17|chr3 (52794094-52794274) | |
| 124-304, gnl|loxAfr1|scaffold_102 (66415-66181) | |
| 124-304, gnl|mm7|chr14 (28365246-28365020) | |
| 124-304, gnl|Mm7|chr14 (28365216-28365036) | |
| 124-304, gnl|monDom2|scaffold_5 (70183638-70183414) | |
| 124-304, gnl|oryCun1|scaffold_208201 (2709-2932) | |
| 124-304, gnl|panTro1|chr2 (54438055-54438280) | |
| 124-304, gnl|rheMac2|chr2 (83567367-83567143) | |
| 124-304, gnl|rn3|chr16 (6370357-6370130) | |
| 124-304, gnl|tetNig1|chr11 (1123013-1123211) | |
| 124-304, gnl|xenTro1|scaffold_1784 (6224-5998) | |
| 451-605, gnl|bosTau2|chr22 (42345410-42345256) | |
| 451-605, gnl|Hg17|chr3 (52795999-52796153) | |
| 451-605, gnl|Mm7|chr14 (28363258-28363104) | |
| 836-1041, gnl|bosTau2|chr22 (42342818-42342613) | |
| 836-1041, gnl|canFam2|chr20 (40036127-40035924) | |
| 836-1041, gnl|dasNov1|scaffold_113998 (6868-6665) | |
| 836-1041, gnl|echTel1|scaffold_309652 (4917-5101) | |
| 836-1041, gnl|fr1|chrUn (303263425-303263609) | |
| 836-1041, gnl|hg17|chr3 (52798697-52798900) | |
| 836-1041, gnl|Hg17|chr3 (52798706-52798911) | |
| 836-1041, gnl|loxAfr1|scaffold_102 (61270-61079) | |
| 836-1041, gnl|mm7|chr14 (28361120-28360917) | |
| 836-1041, gnl|Mm7|chr14 (28361109-28360904) | |
| 836-1041, gnl|oryCun1|scaffold_208201 (6257-6460) | |
| 836-1041, gnl|panTro1|chr2 (54442685-54442888) | |
| 836-1041, gnl|rheMac2|chr2 (83562722-83562519) | |
| 836-1041, gnl|rn3|chr16 (6366079-6365876) | |
| 1048-1214, gnl|bosTau2|chr22 (42320312-42320146) | |
| 1048-1214, gnl|Hg17|chr3 (52816810-52816973) | |
| 1048-1214, gnl|Mm7|chr14 (28339610-28339444) | |
| 1323-1600, gnl|bosTau2|chr22 (42340746-42340469) | |
| 1323-1600, gnl|Hg17|chr3 (52800835-52801115) | |
| 1323-1600, gnl|Mm7|chr14 (28359386-28359110) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-304, gnl|bosTau2|chr22 (42347411-42347231) | |
| 124-304, gnl|canFam2|chr20 (40040307-40040081) | |
| 124-304, gnl|danRer3|chrUn (126789993-126790220) | |
| 124-304, gnl|dasNov1|scaffold_124408 (1739-1934) | |
| 124-304, gnl|echTel1|scaffold_203452 (3952-4164) | |
| 124-304, gnl|fr1|chrUn (303261841-303262044) | |
| 124-304, gnl|hg17|chr3 (52794068-52794292) | |
| 124-304, gnl|Hg17|chr3 (52794094-52794274) | |
| 124-304, gnl|loxAfr1|scaffold_102 (66415-66181) | |
| 124-304, gnl|mm7|chr14 (28365246-28365020) | |
| 124-304, gnl|Mm7|chr14 (28365216-28365036) | |
| 124-304, gnl|monDom2|scaffold_5 (70183638-70183414) | |
| 124-304, gnl|oryCun1|scaffold_208201 (2709-2932) | |
| 124-304, gnl|panTro1|chr2 (54438055-54438280) | |
| 124-304, gnl|rheMac2|chr2 (83567367-83567143) | |
| 124-304, gnl|rn3|chr16 (6370357-6370130) | |
| 124-304, gnl|tetNig1|chr11 (1123013-1123211) | |
| 124-304, gnl|xenTro1|scaffold_1784 (6224-5998) | |
| 451-605, gnl|bosTau2|chr22 (42345410-42345256) | |
| 451-605, gnl|Hg17|chr3 (52795999-52796153) | |
| 451-605, gnl|Mm7|chr14 (28363258-28363104) | |
| 836-1041, gnl|bosTau2|chr22 (42342818-42342613) | |
| 836-1041, gnl|canFam2|chr20 (40036127-40035924) | |
| 836-1041, gnl|dasNov1|scaffold_113998 (6868-6665) | |
| 836-1041, gnl|echTel1|scaffold_309652 (4917-5101) | |
| 836-1041, gnl|fr1|chrUn (303263425-303263609) | |
| 836-1041, gnl|hg17|chr3 (52798697-52798900) | |
| 836-1041, gnl|Hg17|chr3 (52798706-52798911) | |
| 836-1041, gnl|loxAfr1|scaffold_102 (61270-61079) | |
| 836-1041, gnl|mm7|chr14 (28361120-28360917) | |
| 836-1041, gnl|Mm7|chr14 (28361109-28360904) | |
| 836-1041, gnl|oryCun1|scaffold_208201 (6257-6460) | |
| 836-1041, gnl|panTro1|chr2 (54442685-54442888) | |
| 836-1041, gnl|rheMac2|chr2 (83562722-83562519) | |
| 836-1041, gnl|rn3|chr16 (6366079-6365876) | |
| 1048-1214, gnl|bosTau2|chr22 (42320312-42320146) | |
| 1048-1214, gnl|Hg17|chr3 (52816810-52816973) | |
| 1048-1214, gnl|Mm7|chr14 (28339610-28339444) | |
| 1323-1600, gnl|bosTau2|chr22 (42340746-42340469) | |
| 1323-1600, gnl|Hg17|chr3 (52800835-52801115) | |
| 1323-1600, gnl|Mm7|chr14 (28359386-28359110) |
| Expressed library(ies): 5 entry(ies) | More info |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
| cli (3.66748) | |
| eli (1.36633) | |
| fli (1.21729) | |
| eje (0.197668) | |
| nje (0.16592) |
| Expressed library(ies): 5 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cli (3.66748) | |
| eli (1.36633) | |
| fli (1.21729) | |
| eje (0.197668) | |
| nje (0.16592) |