Non-Coding RNA Search

Ss1.1-Pig4-TMW8044M02.5.5

Sequence:


               
               CTGTACAATGAGAACTCAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTT
TAGTATAACTGGCTTCACAGATGGGCTGCCACAGAGTGTGAAATTGTTTGTTGGTTTTAA
GCATTCTGTTCATGGCTCCTAAGACATGATGATTGCCTGAGGAGCATTAGTTTATCATGC
ACACTAGTGCCATGTTTAATTCTTTTTTTTTTTTTTTTCTTTTTACTTAATCTGATGTTA
GTGAAATTTGTCTTACGTGAAAGGATGTTTCAGGGAAATATTTTAAGAAATCTATTTAGA
GTCTCTTTAACACAGTGTCCCATTGAAATTTTAATTTTTAGAGAAGTTATGAATCACTGT
ATCAAGAATCAGATTGGAATGACAATGAAGCCTTTATTGAGCCACGACTTTAAAAGTATA
TATTGCTTTACTGCCTTCAATACCAGTATTACATAAATGCATGTATCAGAAGCTTCACAG
AAATTACATGACTCTTATAGCTAAGAAAGTGATTCTGAGGTGTACATTTGTCTTGCCTTT
TTAAATTTATAAACCTGCCCTAAAAGGAGATGCATATCTGGGAAACTGAACTGTCTTTAT
GCAGTTTAGCCTTCATGTACATAAAATAATGCCATTAATTTTATTGGGGGAGAAATTCCA
TCCAAAAATGTTGCCTACAGCTATGAGTTAAGAGTGTCTGTACAGTGTGTAGCTTTTATT
TTCTAAAATCACAGATAGGGCATGTATATGAATTATAAATATATAAATACGATTTTGTAT
TAAAAGTTTTGTAGTTTATGGCAAAATCTGGTTCTGTGGTAGGCTAATTGAGTACAGTCC
CTGTGAAGGAATGTTTGTGGCTCATGTCAGTGTGTGAATGCATAGACAATTTGAAGTTTT
TGATATATTTGTGATATTTATCTTCCCTGAGCACTGCAATCTCACTACCGCCCCTCCCCA
CCCATCCACCCAAGGGAGTTCAATGGGAATGTTTATTGTGACTTTGTCCTCTGTTGCATT
TTAAAGTTATTTCCTGTAATTTATTTTCAGTACATAATTAAAAATTTGTTGTATATAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGTACAATGAGAACTCAATAAAAATAAACCAAAGTTTACAATCAACTGTAGAAGTAGTT
TAGTATAACTGGCTTCACAGATGGGCTGCCACAGAGTGTGAAATTGTTTGTTGGTTTTAA
GCATTCTGTTCATGGCTCCTAAGACATGATGATTGCCTGAGGAGCATTAGTTTATCATGC
ACACTAGTGCCATGTTTAATTCTTTTTTTTTTTTTTTTCTTTTTACTTAATCTGATGTTA
GTGAAATTTGTCTTACGTGAAAGGATGTTTCAGGGAAATATTTTAAGAAATCTATTTAGA
GTCTCTTTAACACAGTGTCCCATTGAAATTTTAATTTTTAGAGAAGTTATGAATCACTGT
ATCAAGAATCAGATTGGAATGACAATGAAGCCTTTATTGAGCCACGACTTTAAAAGTATA
TATTGCTTTACTGCCTTCAATACCAGTATTACATAAATGCATGTATCAGAAGCTTCACAG
AAATTACATGACTCTTATAGCTAAGAAAGTGATTCTGAGGTGTACATTTGTCTTGCCTTT
TTAAATTTATAAACCTGCCCTAAAAGGAGATGCATATCTGGGAAACTGAACTGTCTTTAT
GCAGTTTAGCCTTCATGTACATAAAATAATGCCATTAATTTTATTGGGGGAGAAATTCCA
TCCAAAAATGTTGCCTACAGCTATGAGTTAAGAGTGTCTGTACAGTGTGTAGCTTTTATT
TTCTAAAATCACAGATAGGGCATGTATATGAATTATAAATATATAAATACGATTTTGTAT
TAAAAGTTTTGTAGTTTATGGCAAAATCTGGTTCTGTGGTAGGCTAATTGAGTACAGTCC
CTGTGAAGGAATGTTTGTGGCTCATGTCAGTGTGTGAATGCATAGACAATTTGAAGTTTT
TGATATATTTGTGATATTTATCTTCCCTGAGCACTGCAATCTCACTACCGCCCCTCCCCA
CCCATCCACCCAAGGGAGTTCAATGGGAATGTTTATTGTGACTTTGTCCTCTGTTGCATT
TTAAAGTTATTTCCTGTAATTTATTTTCAGTACATAATTAAAAATTTGTTGTATATAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               39-237, - strand, RNAz p=0.954592
               

               
               712-830, + strand, RNAz p=0.706112

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               39-237, - strand, RNAz p=0.954592
               

               
               712-830, + strand, RNAz p=0.706112

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               718-835, + strand, RNAmicro p=0.995482

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               718-835, + strand, RNAmicro p=0.995482

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1082, gnl|bosTau2|chr11 (16440225-16441296)
               

               
               1-1082, gnl|Hg17|chr2 (38434740-38433678)
               

               
               1-1082, gnl|Mm7|chr17 (78145827-78144776)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1082, gnl|bosTau2|chr11 (16440225-16441296)
               

               
               1-1082, gnl|Hg17|chr2 (38434740-38433678)
               

               
               1-1082, gnl|Mm7|chr17 (78145827-78144776)

Expressed library(ies): 30 entry(ies)

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Expressed library(ies): 30 entry(ies)

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               cbe (0.717703)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               liv (0.438853)
               

               
               gul (0.355177)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cbe (0.717703)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               liv (0.438853)
               

               
               gul (0.355177)
               

               
               sme (0.305437)
               

               
               jej (0.296765)
               

               
               cte (0.29274)
               

               
               pty (0.285429)
               

               
               csk (0.281492)
               

               
               tra (0.246184)
               

               
               cmu (0.186393)
               

               
               mgm (0.180343)
               

               
               sto (0.179824)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	39-237, - strand, RNAz p=0.954592
	712-830, + strand, RNAz p=0.706112

	1-1082, gnl\|bosTau2\|chr11 (16440225-16441296)
	1-1082, gnl\|Hg17\|chr2 (38434740-38433678)
	1-1082, gnl\|Mm7\|chr17 (78145827-78144776)

	cbe (0.717703)
	sin (0.524843)
	tbr (0.462535)
	isp (0.451128)
	liv (0.438853)
	gul (0.355177)
	sme (0.305437)
	jej (0.296765)
	cte (0.29274)
	pty (0.285429)
	csk (0.281492)
	tra (0.246184)
	cmu (0.186393)
	mgm (0.180343)
	sto (0.179824)
	fty (0.17584)
	rec (0.17307)
	cje (0.165235)
	ski (0.146735)
	lin (0.145603)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	cly (0.120642)
	ecc (0.115035)
	spc (0.113366)
	nbm (0.0993246)