Non-Coding RNA Search

Ss1.1-Pig4-TMW8044M05.3

Sequence:


               
               ACCTCTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTTGACGACCTGAACTGGGAAA
AGAGGAAGTACGACACAAAGGCAGCCTACTGCCAGAGTAAGCTGGCGCTGGTCCTCTTCT
CCATGGAACTGAGCCGGCGGCTGCAAGGCACGGGCGTCACGGTCAATGCCCTGCACCCTG
GCGTGGCCAGGACCGAGCTGGGCAGACACACGGGCATGCACAATTCTGCCTTCTCCAGCT
TCACGCTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCCCAGCTGGCAGCCCAGCCCA
GCACGTACCTGGCCGTGGCCGAGGAGCTGGAGAGCGTCTCCGGCAAGTACTTTGATGGAT
TCAGAGAGAAGGCTCCGGCCCCCGAAGCTGAGGATGAGGAGGTAGCCCAGAGGCTTTGGG
CTGAAAGTGCCCGCCTGGTGGGCTTGGAACTGTCCTCTGGAGCCTCCGAAAGGGGACAGC
CCCTCCCCAAGTAACCCCTGAAAGCCACCAGGGAGGCAGCGTCACGGTCAAGGGCGGAGC
AGCCCCCAAACAAGGTTGACCGCCATGCTTGCCGCACCCGCTAGGTGGCAGTATTGGCCA
AGGAATGCTGGCTGCCAGGCCCGCAGCACCCGCTAGGTGGCAGTATCGCTCCCTTCTGGC
CACAGGTGGGCACCTGACCCGGGGCTGCCTGGTGAGCTGTGCCATCAGATGCTTCCCTCG
GGAATCTAAACCAGGAACCTCGGAGGGTGGTGTCACCTCTGTCTGGCGTGGGCCGCGTTG
GGGACTACGGCCAGTGGGCAATTTGTCCGCCAGATGCTTGAGCTCATGCTTCCTGGTGGG
GCCTTGACACCTCCGTCTCCGCTCCAAGCCTTGGCGTCTCCAGCCGCGAGCTGTGCGCAG
TAAGGAACCCGACTACCTCATCGGACGGCGGTGCCCGAGTTCTTGCCTGGCTCGGGCGAG
GGCAGCCGCACACCTTCCCAGTGGGCGCTCACCCGGGACCTGCCGTGAGCCAGACGCTGG
CGAGCGATGCCCCGCCGGGAACGGGCTGACTCTGATCCGGCCTTGTTATTCGAGTGACGC
TGGGGGCGGCGTGGCGGGGGAACCTCTGCGGAGCCAGGATGGCTGGGGTCACGACCTCTC
CAGTTCCTGTGGTGACTTCAACCATAGACTCTCCAACTTGCTCCTTAATAATAAAAATGA
AAACATCAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACCTCTCGTCCTTGGCCCACGTTGCTGGGCACATCGACTTTGACGACCTGAACTGGGAAA
AGAGGAAGTACGACACAAAGGCAGCCTACTGCCAGAGTAAGCTGGCGCTGGTCCTCTTCT
CCATGGAACTGAGCCGGCGGCTGCAAGGCACGGGCGTCACGGTCAATGCCCTGCACCCTG
GCGTGGCCAGGACCGAGCTGGGCAGACACACGGGCATGCACAATTCTGCCTTCTCCAGCT
TCACGCTCGGGCCCATCTTCTGGCTGCTGGTCAAGAGCCCCCAGCTGGCAGCCCAGCCCA
GCACGTACCTGGCCGTGGCCGAGGAGCTGGAGAGCGTCTCCGGCAAGTACTTTGATGGAT
TCAGAGAGAAGGCTCCGGCCCCCGAAGCTGAGGATGAGGAGGTAGCCCAGAGGCTTTGGG
CTGAAAGTGCCCGCCTGGTGGGCTTGGAACTGTCCTCTGGAGCCTCCGAAAGGGGACAGC
CCCTCCCCAAGTAACCCCTGAAAGCCACCAGGGAGGCAGCGTCACGGTCAAGGGCGGAGC
AGCCCCCAAACAAGGTTGACCGCCATGCTTGCCGCACCCGCTAGGTGGCAGTATTGGCCA
AGGAATGCTGGCTGCCAGGCCCGCAGCACCCGCTAGGTGGCAGTATCGCTCCCTTCTGGC
CACAGGTGGGCACCTGACCCGGGGCTGCCTGGTGAGCTGTGCCATCAGATGCTTCCCTCG
GGAATCTAAACCAGGAACCTCGGAGGGTGGTGTCACCTCTGTCTGGCGTGGGCCGCGTTG
GGGACTACGGCCAGTGGGCAATTTGTCCGCCAGATGCTTGAGCTCATGCTTCCTGGTGGG
GCCTTGACACCTCCGTCTCCGCTCCAAGCCTTGGCGTCTCCAGCCGCGAGCTGTGCGCAG
TAAGGAACCCGACTACCTCATCGGACGGCGGTGCCCGAGTTCTTGCCTGGCTCGGGCGAG
GGCAGCCGCACACCTTCCCAGTGGGCGCTCACCCGGGACCTGCCGTGAGCCAGACGCTGG
CGAGCGATGCCCCGCCGGGAACGGGCTGACTCTGATCCGGCCTTGTTATTCGAGTGACGC
TGGGGGCGGCGTGGCGGGGGAACCTCTGCGGAGCCAGGATGGCTGGGGTCACGACCTCTC
CAGTTCCTGTGGTGACTTCAACCATAGACTCTCCAACTTGCTCCTTAATAATAAAAATGA
AAACATCAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26329759|dbj|BAC28618.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26329759|dbj|BAC28618.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               329-521, + strand, RNAz p=0.998888

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-521, + strand, RNAz p=0.998888

Aligned organism(s): 22 entry(ies)

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Aligned organism(s): 22 entry(ies)

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               1-148, gnl|bosTau2|chr18 (55167547-55167400)
               

               
               1-148, gnl|canFam2|chr1 (105623595-105623416)
               

               
               1-148, gnl|danRer3|chr20 (9287087-9287269)
               

               
               1-148, gnl|dasNov1|scaffold_276485 (537-717)
               

               
               1-148, gnl|echTel1|scaffold_242374 (4608-4787)
               

               
               1-148, gnl|fr1|chrUn (240952568-240952395)
               

               
               1-148, gnl|hg17|chr19 (60251493-60251673)
               

               
               1-148, gnl|Hg17|chr19 (60251655-60251508)
               

               
               1-148, gnl|loxAfr1|scaffold_77103 (5305-5486)
               

               
               1-148, gnl|mm7|chr7 (3989697-3989870)
               

               
               1-148, gnl|Mm7|chr7 (3989852-3989705)
               

               
               1-148, gnl|oryCun1|scaffold_214380 (14443-14617)
               

               
               1-148, gnl|panTro1|chr20 (57673808-57673988)
               

               
               1-148, gnl|rheMac2|chr7 (130809168-130809330)
               

               
               1-148, gnl|rn3|chr1 (68203489-68203316)
               

               
               1-148, gnl|tetNig1|chr2 (4846696-4846521)
               

               
               1-148, gnl|xenTro1|scaffold_41 (1729814-1729979)
               


               
               249-603, gnl|bosTau2|chr18 (55164754-55164390)
               

               
               249-603, gnl|Hg17|chr19 (60248490-60248190)
               

               
               249-603, gnl|Mm7|chr7 (3986084-3985758)
               


               
               691-1197, gnl|bosTau2|chr18 (55163824-55163324)
               

               
               691-1197, gnl|Hg17|chr19 (60248034-60247512)

Aligned organism(s): 22 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-148, gnl|bosTau2|chr18 (55167547-55167400)
               

               
               1-148, gnl|canFam2|chr1 (105623595-105623416)
               

               
               1-148, gnl|danRer3|chr20 (9287087-9287269)
               

               
               1-148, gnl|dasNov1|scaffold_276485 (537-717)
               

               
               1-148, gnl|echTel1|scaffold_242374 (4608-4787)
               

               
               1-148, gnl|fr1|chrUn (240952568-240952395)
               

               
               1-148, gnl|hg17|chr19 (60251493-60251673)
               

               
               1-148, gnl|Hg17|chr19 (60251655-60251508)
               

               
               1-148, gnl|loxAfr1|scaffold_77103 (5305-5486)
               

               
               1-148, gnl|mm7|chr7 (3989697-3989870)
               

               
               1-148, gnl|Mm7|chr7 (3989852-3989705)
               

               
               1-148, gnl|oryCun1|scaffold_214380 (14443-14617)
               

               
               1-148, gnl|panTro1|chr20 (57673808-57673988)
               

               
               1-148, gnl|rheMac2|chr7 (130809168-130809330)
               

               
               1-148, gnl|rn3|chr1 (68203489-68203316)
               

               
               1-148, gnl|tetNig1|chr2 (4846696-4846521)
               

               
               1-148, gnl|xenTro1|scaffold_41 (1729814-1729979)
               


               
               249-603, gnl|bosTau2|chr18 (55164754-55164390)
               

               
               249-603, gnl|Hg17|chr19 (60248490-60248190)
               

               
               249-603, gnl|Mm7|chr7 (3986084-3985758)
               


               
               691-1197, gnl|bosTau2|chr18 (55163824-55163324)
               

               
               691-1197, gnl|Hg17|chr19 (60248034-60247512)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               nms (0.213858)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               nms (0.213858)
               

               
               ton (0.1755)
               

               
               hlv (0.139256)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)

	1-148, gnl\|bosTau2\|chr18 (55167547-55167400)
	1-148, gnl\|canFam2\|chr1 (105623595-105623416)
	1-148, gnl\|danRer3\|chr20 (9287087-9287269)
	1-148, gnl\|dasNov1\|scaffold_276485 (537-717)
	1-148, gnl\|echTel1\|scaffold_242374 (4608-4787)
	1-148, gnl\|fr1\|chrUn (240952568-240952395)
	1-148, gnl\|hg17\|chr19 (60251493-60251673)
	1-148, gnl\|Hg17\|chr19 (60251655-60251508)
	1-148, gnl\|loxAfr1\|scaffold_77103 (5305-5486)
	1-148, gnl\|mm7\|chr7 (3989697-3989870)
	1-148, gnl\|Mm7\|chr7 (3989852-3989705)
	1-148, gnl\|oryCun1\|scaffold_214380 (14443-14617)
	1-148, gnl\|panTro1\|chr20 (57673808-57673988)
	1-148, gnl\|rheMac2\|chr7 (130809168-130809330)
	1-148, gnl\|rn3\|chr1 (68203489-68203316)
	1-148, gnl\|tetNig1\|chr2 (4846696-4846521)
	1-148, gnl\|xenTro1\|scaffold_41 (1729814-1729979)

	249-603, gnl\|bosTau2\|chr18 (55164754-55164390)
	249-603, gnl\|Hg17\|chr19 (60248490-60248190)
	249-603, gnl\|Mm7\|chr7 (3986084-3985758)

	691-1197, gnl\|bosTau2\|chr18 (55163824-55163324)
	691-1197, gnl\|Hg17\|chr19 (60248034-60247512)

	nms (0.213858)
	ton (0.1755)
	hlv (0.139256)
	pgl (0.118483)
	ebs (0.118301)