Non-Coding RNA Search

Ss1.1-Pig4-TMW8044M13.3

Sequence:


               
               ACTCAGTGAAATGGTACAAATCTGAAACTTTGATGGTGGAAAGTGAAGTTTTAACAGAGA
ACCGTGTTTTACCGAGTGCCAAAAAAGCTTTGAGCTTCCTTGCACAAAATCTATAAATTT
TTGCATTTTTCACACCAGGTCCAGATAGTCCCCTGCCCCTGGTATCTCTCCACCATTAAA
ACACAAGCCACATAACTTACTTTTTCATTTACTTTTATTTTCAAGAGTTAATACAATCAA
ATTAATTCCATTTAAAGAAATGTAGACAAATTCTATAACGAATATAGGTTGAGTGATCAA
GCTAAATGCAAAGTACATTTCAAACAAATCCAAACAGAGTTTATGCAGACAACATTAAAA
ATAAGAAAAAGGGGACAGGGAGTACTCAGCAGGCAAAGTACCAAAAATTGATTTAAATGC
TACATGGGGTGATTAGGATAGGCTTTAAGTCATAGCTGTTTGCAGGTACTTTAGTATCAG
AGATCCATTCTGATTGGTCATTTTCTATGGCTGACCATTCTTGTCATTAAATGTGATATA
ACTGATTATTAGCTCAACAGTTTTATTTGGTTACTTAAGCAATATTTCCTTCAATGACTA
TTTTGGAGAAAAGAAAAGTAGGTTTAAAGAAAATGAAACCTAAATGAAACATTTTCTAAC
AAAAAATCTACTGTTTGAAAATCATGCTCTACCTTTTTATCATATTCTCAGCTATATAAA
ATCATTTATTTTGAAGATTTTTAGCCTGATGTTAATTTGAAATCTGTTAATCATATTGTG
GAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGGTTTTTTAAAGAAGAATGGAATTTG
GTCGCTATTTTACCATAGAACCTAAAGCTTTTTGTGGTTCCTGGTGTCCTCTGTAAAACT
TAGTGTCAAAGTGATCAACTTTGAGGTTTTTTTTCCCTTCTAATCTGCTTTATATTACAT
ACCCTTTAGGAAATGGGAACCTGGTGAATATACAATGAATTGTATAATATTTTAATGTGT
AACTTTTTCAACTGTGAAACTATGACTATTGGTTTTTTGAAGAAAACAGCTGCTGATAAA
TATTTTGTGTAAAGTGTAGTTCTTATTAATCAGGAAAATAATCAATGACTCAATTAGAAT
GTATATACCCTCTTGAATTTTATTTTAAATAGATTGGTGATTTTTCACATAGGTAAAACA
CAGTCCATCTGTATTTTTTCCGTCAAAAATTGAGTGATTTGGCATTTATAAAAAAAACTA
GGAGCAGGCTATTTATTTTAAAGGTATCATGGAAATTTCACAGTACATAAACTTGGATTT
GTCTTTTAATGATTTGTAAATCAGTTTAATACATATCCTGACCAATAGTCCCTGCTTGCC
AACTCTTTGAAGAAATTTAATTTCCAGCATTATTTTAAAGCCAGCAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACTCAGTGAAATGGTACAAATCTGAAACTTTGATGGTGGAAAGTGAAGTTTTAACAGAGA
ACCGTGTTTTACCGAGTGCCAAAAAAGCTTTGAGCTTCCTTGCACAAAATCTATAAATTT
TTGCATTTTTCACACCAGGTCCAGATAGTCCCCTGCCCCTGGTATCTCTCCACCATTAAA
ACACAAGCCACATAACTTACTTTTTCATTTACTTTTATTTTCAAGAGTTAATACAATCAA
ATTAATTCCATTTAAAGAAATGTAGACAAATTCTATAACGAATATAGGTTGAGTGATCAA
GCTAAATGCAAAGTACATTTCAAACAAATCCAAACAGAGTTTATGCAGACAACATTAAAA
ATAAGAAAAAGGGGACAGGGAGTACTCAGCAGGCAAAGTACCAAAAATTGATTTAAATGC
TACATGGGGTGATTAGGATAGGCTTTAAGTCATAGCTGTTTGCAGGTACTTTAGTATCAG
AGATCCATTCTGATTGGTCATTTTCTATGGCTGACCATTCTTGTCATTAAATGTGATATA
ACTGATTATTAGCTCAACAGTTTTATTTGGTTACTTAAGCAATATTTCCTTCAATGACTA
TTTTGGAGAAAAGAAAAGTAGGTTTAAAGAAAATGAAACCTAAATGAAACATTTTCTAAC
AAAAAATCTACTGTTTGAAAATCATGCTCTACCTTTTTATCATATTCTCAGCTATATAAA
ATCATTTATTTTGAAGATTTTTAGCCTGATGTTAATTTGAAATCTGTTAATCATATTGTG
GAATTTGTTTTTTTAAAAAAGATGTTTCTAATTGGGTTTTTTAAAGAAGAATGGAATTTG
GTCGCTATTTTACCATAGAACCTAAAGCTTTTTGTGGTTCCTGGTGTCCTCTGTAAAACT
TAGTGTCAAAGTGATCAACTTTGAGGTTTTTTTTCCCTTCTAATCTGCTTTATATTACAT
ACCCTTTAGGAAATGGGAACCTGGTGAATATACAATGAATTGTATAATATTTTAATGTGT
AACTTTTTCAACTGTGAAACTATGACTATTGGTTTTTTGAAGAAAACAGCTGCTGATAAA
TATTTTGTGTAAAGTGTAGTTCTTATTAATCAGGAAAATAATCAATGACTCAATTAGAAT
GTATATACCCTCTTGAATTTTATTTTAAATAGATTGGTGATTTTTCACATAGGTAAAACA
CAGTCCATCTGTATTTTTTCCGTCAAAAATTGAGTGATTTGGCATTTATAAAAAAAACTA
GGAGCAGGCTATTTATTTTAAAGGTATCATGGAAATTTCACAGTACATAAACTTGGATTT
GTCTTTTAATGATTTGTAAATCAGTTTAATACATATCCTGACCAATAGTCCCTGCTTGCC
AACTCTTTGAAGAAATTTAATTTCCAGCATTATTTTAAAGCCAGCAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               2-1427, gnl|bosTau2|chr1 (57192828-57194267)
               

               
               2-1427, gnl|Hg17|chr3 (180436974-180438319)
               

               
               2-1427, gnl|Mm7|chr3 (32273743-32275158)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-1427, gnl|bosTau2|chr1 (57192828-57194267)
               

               
               2-1427, gnl|Hg17|chr3 (180436974-180438319)
               

               
               2-1427, gnl|Mm7|chr3 (32273743-32275158)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               ste (0.135208)

	2-1427, gnl\|bosTau2\|chr1 (57192828-57194267)
	2-1427, gnl\|Hg17\|chr3 (180436974-180438319)
	2-1427, gnl\|Mm7\|chr3 (32273743-32275158)