Non-Coding RNA Search

Ss1.1-Pig4-TMW8044M15.5

Sequence:


               
               CTGCAGAGGTTAAGTGGCTCTACTTGTGTTTCCATGCTCGTTTTATCAACAGACTGCCAT
CCTCAGGGAGTCCTCAGACTGCCCTTCTGTCCGTGGCTCAGGAGAGCCTTGATGCGGCTA
ACCATTTTTCGGAATCTAGATTCTTTAGCCCACTAGTAAAAAATTACTTCATCATTAGGT
TCTTCCTTCCACCAGATTATACATAAAGAGATATATCTGTTATGTGGTGGGATTTTTCAC
ATTCTTGTGGACTGTGAGCTGCATTTTTTGATGTAAGAGAGCAAGTAGTAATATACAGTG
GCGGTTAAGCAGCAGGCATATTCATGCCAGATACTCAGCTGCCTCTGTACAACCTCCGTG
AGTCTTGCCATTTTTCTTAGTGTGACCAACCACACCAACACCAATTGAAAAGGATACATT
TTTAACTTTAAAAGCTGGCTCTAAGTAGTTGGTAGATCCCTGGGCCTTCACTGGTAGCAG
TTTGATGAGAGAAGGAAGGAGAAAGTATTGTGGGATAGTCGAGACATTCCTGTTCATACC
AGTTCAATTTCACTAAACTCTCTATTTTGTGGTATGTGCATGTATGTATATGTATATAAC
CCCTTTTTAAGTGTTTAGGTCCAAATTAACTATAACTTTATTTTCAGAAATAATTCTGAA
ACTTTTAAGAAATTTTATAAAAGCTAAAATATCTTATTGAAATTTTACTACAAAATTTTG
CTTCAGCAGTTATTGAATAACTCACCCCTTTTAATAAAATTGGTATAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGCAGAGGTTAAGTGGCTCTACTTGTGTTTCCATGCTCGTTTTATCAACAGACTGCCAT
CCTCAGGGAGTCCTCAGACTGCCCTTCTGTCCGTGGCTCAGGAGAGCCTTGATGCGGCTA
ACCATTTTTCGGAATCTAGATTCTTTAGCCCACTAGTAAAAAATTACTTCATCATTAGGT
TCTTCCTTCCACCAGATTATACATAAAGAGATATATCTGTTATGTGGTGGGATTTTTCAC
ATTCTTGTGGACTGTGAGCTGCATTTTTTGATGTAAGAGAGCAAGTAGTAATATACAGTG
GCGGTTAAGCAGCAGGCATATTCATGCCAGATACTCAGCTGCCTCTGTACAACCTCCGTG
AGTCTTGCCATTTTTCTTAGTGTGACCAACCACACCAACACCAATTGAAAAGGATACATT
TTTAACTTTAAAAGCTGGCTCTAAGTAGTTGGTAGATCCCTGGGCCTTCACTGGTAGCAG
TTTGATGAGAGAAGGAAGGAGAAAGTATTGTGGGATAGTCGAGACATTCCTGTTCATACC
AGTTCAATTTCACTAAACTCTCTATTTTGTGGTATGTGCATGTATGTATATGTATATAAC
CCCTTTTTAAGTGTTTAGGTCCAAATTAACTATAACTTTATTTTCAGAAATAATTCTGAA
ACTTTTAAGAAATTTTATAAAAGCTAAAATATCTTATTGAAATTTTACTACAAAATTTTG
CTTCAGCAGTTATTGAATAACTCACCCCTTTTAATAAAATTGGTATAA

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

Help | Less info


               
               1-598, gnl|bosTau2|chrX (17999932-17999337)
               

               
               1-598, gnl|canFam2|chrX (78178142-78178887)
               

               
               1-598, gnl|echTel1|scaffold_220682 (7080-7791)
               

               
               1-598, gnl|hg17|chrX (100224092-100224854)
               

               
               1-598, gnl|Hg17|chrX (100224152-100224733)
               

               
               1-598, gnl|loxAfr1|scaffold_35587 (34894-34187)
               

               
               1-598, gnl|mm7|chrX (129081214-129081894)
               

               
               1-598, gnl|Mm7|chrX (129081260-129081803)
               

               
               1-598, gnl|oryCun1|scaffold_131450 (4091-4792)
               

               
               1-598, gnl|rheMac2|chrX (99870491-99871238)
               

               
               1-598, gnl|rn3|chrX (121910327-121911029)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-598, gnl|bosTau2|chrX (17999932-17999337)
               

               
               1-598, gnl|canFam2|chrX (78178142-78178887)
               

               
               1-598, gnl|echTel1|scaffold_220682 (7080-7791)
               

               
               1-598, gnl|hg17|chrX (100224092-100224854)
               

               
               1-598, gnl|Hg17|chrX (100224152-100224733)
               

               
               1-598, gnl|loxAfr1|scaffold_35587 (34894-34187)
               

               
               1-598, gnl|mm7|chrX (129081214-129081894)
               

               
               1-598, gnl|Mm7|chrX (129081260-129081803)
               

               
               1-598, gnl|oryCun1|scaffold_131450 (4091-4792)
               

               
               1-598, gnl|rheMac2|chrX (99870491-99871238)
               

               
               1-598, gnl|rn3|chrX (121910327-121911029)

Expressed library(ies): 4 entry(ies)

More info

Expressed library(ies): 4 entry(ies)

Help | Less info


               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

Expressed library(ies): 4 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               tbr (0.154178)
               

               
               sug (0.127291)
               

               
               thg (0.126791)

	1-598, gnl\|bosTau2\|chrX (17999932-17999337)
	1-598, gnl\|canFam2\|chrX (78178142-78178887)
	1-598, gnl\|echTel1\|scaffold_220682 (7080-7791)
	1-598, gnl\|hg17\|chrX (100224092-100224854)
	1-598, gnl\|Hg17\|chrX (100224152-100224733)
	1-598, gnl\|loxAfr1\|scaffold_35587 (34894-34187)
	1-598, gnl\|mm7\|chrX (129081214-129081894)
	1-598, gnl\|Mm7\|chrX (129081260-129081803)
	1-598, gnl\|oryCun1\|scaffold_131450 (4091-4792)
	1-598, gnl\|rheMac2\|chrX (99870491-99871238)
	1-598, gnl\|rn3\|chrX (121910327-121911029)