Ss1.1-Pig4-TMW8044M17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATGTGGTTCTACCTCTAGTGAGTGCTCAATAAAAGACCAACTAGAAGGCAGAATAGAA AGACTGGGCTTTGAAGAACTATCACAAAGAGGGGCTGATGCAATGTTACGAGGTCAAGGA TTCATCAAAGATGATAAAAATGAAACCTGTGGAGTTTTAAACATAGATCCACATGTAGAA GAGACTGATTCTCAATTATGTGTAAGAACAGCAGAGATGGGAACTTCAATTCAAACACCA TATGCAGTAACTGTTGAGAATGAAAAATGTCTTAAGAATTCAACTAAAGCCGGAACTCCA GGAACCACAGGAAACCTATCTCAACTGGCACAATCAGAGCTCTTTGTAAGTTCTGGGTCA TTCTCATTACAGAGCTCTGTTCCAGTCTGGGAGACAGAATCTGGCTTTGGTATAATGGAA GAACCAGAACTCACAATGATAAGCACCAGTGACATCAGCACTGCAGAAATGGGTTTTGCA GACTTAACCCTAGAAGAGAAAGAAAATGAGGCAAAGAACTGTTTTCAGGTGAGTGAATTT CTGCCTCTTCCATCAGAAAGAGAAAATTCAGATCACCCAGCTGCATCAGAACATTCTGTG AAGAAACTAACCACATCCACAGAAACCCTCTCAAAGTTTACAGCTACACCAGGGAGCTTA CAAGAAGCATTTATAAAAAGAAAAAAATCCTTTATTGAGAGATCTTCACAGAGACAGAAA GAAATAAAGAACAAAATTCGTGTCTCTGTAAATTCTCAAACTAAAATAGTCAAGGAGAAA CCTACAGGTTCATTTGTGAGTCACCTAAAGGGTGTGACTAAGGTCAGAATGTCTTTTCCT GAAGACAGAAAGACTGCACAAACCCATATGCACCAAAGAGCTCTAAGATTATACCATCAG TTACCTGAAGTGAAACATCAAAAGGAAGAGAAAGCAAAGCAAGATGCGTATGCCCAAAAC AGAGCAAGGGCAAAAGAATTTCATAAGAAAACACTAGAGAAACTTCGAGCCAAAAATACA TGCTGACTGTACAAAATGTAAAGGTTTTTTTTTATGTGTAGCACAGACAAAATTATTTAA GTCAATAAACTTTTAAGGATTCTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATGTGGTTCTACCTCTAGTGAGTGCTCAATAAAAGACCAACTAGAAGGCAGAATAGAA AGACTGGGCTTTGAAGAACTATCACAAAGAGGGGCTGATGCAATGTTACGAGGTCAAGGA TTCATCAAAGATGATAAAAATGAAACCTGTGGAGTTTTAAACATAGATCCACATGTAGAA GAGACTGATTCTCAATTATGTGTAAGAACAGCAGAGATGGGAACTTCAATTCAAACACCA TATGCAGTAACTGTTGAGAATGAAAAATGTCTTAAGAATTCAACTAAAGCCGGAACTCCA GGAACCACAGGAAACCTATCTCAACTGGCACAATCAGAGCTCTTTGTAAGTTCTGGGTCA TTCTCATTACAGAGCTCTGTTCCAGTCTGGGAGACAGAATCTGGCTTTGGTATAATGGAA GAACCAGAACTCACAATGATAAGCACCAGTGACATCAGCACTGCAGAAATGGGTTTTGCA GACTTAACCCTAGAAGAGAAAGAAAATGAGGCAAAGAACTGTTTTCAGGTGAGTGAATTT CTGCCTCTTCCATCAGAAAGAGAAAATTCAGATCACCCAGCTGCATCAGAACATTCTGTG AAGAAACTAACCACATCCACAGAAACCCTCTCAAAGTTTACAGCTACACCAGGGAGCTTA CAAGAAGCATTTATAAAAAGAAAAAAATCCTTTATTGAGAGATCTTCACAGAGACAGAAA GAAATAAAGAACAAAATTCGTGTCTCTGTAAATTCTCAAACTAAAATAGTCAAGGAGAAA CCTACAGGTTCATTTGTGAGTCACCTAAAGGGTGTGACTAAGGTCAGAATGTCTTTTCCT GAAGACAGAAAGACTGCACAAACCCATATGCACCAAAGAGCTCTAAGATTATACCATCAG TTACCTGAAGTGAAACATCAAAAGGAAGAGAAAGCAAAGCAAGATGCGTATGCCCAAAAC AGAGCAAGGGCAAAAGAATTTCATAAGAAAACACTAGAGAAACTTCGAGCCAAAAATACA TGCTGACTGTACAAAATGTAAAGGTTTTTTTTTATGTGTAGCACAGACAAAATTATTTAA GTCAATAAACTTTTAAGGATTCTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 2-115, - strand, RNAz p=0.631665 | |
| 671-789, - strand, RNAz p=0.979389 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 2-115, - strand, RNAz p=0.631665 | |
| 671-789, - strand, RNAz p=0.979389 |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 2-403, gnl|bosTau2|chr29 (539683-540070) | |
| 2-403, gnl|canFam2|chr21 (10024614-10024251) | |
| 2-403, gnl|dasNov1|scaffold_26690 (81799-81427) | |
| 2-403, gnl|echTel1|scaffold_316886 (28335-27945) | |
| 2-403, gnl|hg17|chr11 (93100058-93100445) | |
| 2-403, gnl|Hg17|chr11 (93100063-93100465) | |
| 2-403, gnl|loxAfr1|scaffold_28145 (25857-25470) | |
| 2-403, gnl|mm7|chr9 (15161444-15161114) | |
| 2-403, gnl|Mm7|chr9 (15161437-15161094) | |
| 2-403, gnl|monDom2|scaffold_15 (4331476-4331182) | |
| 2-403, gnl|oryCun1|scaffold_215179 (54421-54805) | |
| 2-403, gnl|panTro1|chr9 (95001839-95002226) | |
| 2-403, gnl|rheMac2|chr14 (92289176-92289563) | |
| 2-403, gnl|rn3|chr8 (12120130-12119794) | |
| 619-789, gnl|bosTau2|chr29 (545964-546134) | |
| 619-789, gnl|canFam2|chr21 (10022713-10022587) | |
| 619-789, gnl|dasNov1|scaffold_2894 (15966-16095) | |
| 619-789, gnl|echTel1|scaffold_316886 (25920-25791) | |
| 619-789, gnl|hg17|chr11 (93102424-93102550) | |
| 619-789, gnl|Hg17|chr11 (93102424-93102597) | |
| 619-789, gnl|loxAfr1|scaffold_28145 (22661-22535) | |
| 619-789, gnl|mm7|chr9 (15156206-15156103) | |
| 619-789, gnl|Mm7|chr9 (15156224-15156063) | |
| 619-789, gnl|oryCun1|scaffold_199600 (46055-46181) | |
| 619-789, gnl|panTro1|chr9 (95004166-95004292) | |
| 619-789, gnl|rheMac2|chr14 (92291853-92291979) | |
| 619-789, gnl|rn3|chr8 (12117662-12117552) | |
| 886-987, gnl|bosTau2|chr29 (546467-546568) | |
| 886-987, gnl|Hg17|chr11 (93102861-93102962) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-403, gnl|bosTau2|chr29 (539683-540070) | |
| 2-403, gnl|canFam2|chr21 (10024614-10024251) | |
| 2-403, gnl|dasNov1|scaffold_26690 (81799-81427) | |
| 2-403, gnl|echTel1|scaffold_316886 (28335-27945) | |
| 2-403, gnl|hg17|chr11 (93100058-93100445) | |
| 2-403, gnl|Hg17|chr11 (93100063-93100465) | |
| 2-403, gnl|loxAfr1|scaffold_28145 (25857-25470) | |
| 2-403, gnl|mm7|chr9 (15161444-15161114) | |
| 2-403, gnl|Mm7|chr9 (15161437-15161094) | |
| 2-403, gnl|monDom2|scaffold_15 (4331476-4331182) | |
| 2-403, gnl|oryCun1|scaffold_215179 (54421-54805) | |
| 2-403, gnl|panTro1|chr9 (95001839-95002226) | |
| 2-403, gnl|rheMac2|chr14 (92289176-92289563) | |
| 2-403, gnl|rn3|chr8 (12120130-12119794) | |
| 619-789, gnl|bosTau2|chr29 (545964-546134) | |
| 619-789, gnl|canFam2|chr21 (10022713-10022587) | |
| 619-789, gnl|dasNov1|scaffold_2894 (15966-16095) | |
| 619-789, gnl|echTel1|scaffold_316886 (25920-25791) | |
| 619-789, gnl|hg17|chr11 (93102424-93102550) | |
| 619-789, gnl|Hg17|chr11 (93102424-93102597) | |
| 619-789, gnl|loxAfr1|scaffold_28145 (22661-22535) | |
| 619-789, gnl|mm7|chr9 (15156206-15156103) | |
| 619-789, gnl|Mm7|chr9 (15156224-15156063) | |
| 619-789, gnl|oryCun1|scaffold_199600 (46055-46181) | |
| 619-789, gnl|panTro1|chr9 (95004166-95004292) | |
| 619-789, gnl|rheMac2|chr14 (92291853-92291979) | |
| 619-789, gnl|rn3|chr8 (12117662-12117552) | |
| 886-987, gnl|bosTau2|chr29 (546467-546568) | |
| 886-987, gnl|Hg17|chr11 (93102861-93102962) |
| Expressed library(ies): 14 entry(ies) | More info |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
| lin (0.436808) | |
| fty (0.351679) | |
| jej (0.197844) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 14 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| lin (0.436808) | |
| fty (0.351679) | |
| jej (0.197844) | |
| rec (0.17307) | |
| mcp (0.170648) | |
| isp (0.150376) | |
| hlv (0.139256) | |
| lyg (0.133103) | |
| kid (0.129735) | |
| ret (0.128733) | |
| thg (0.126791) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| spc (0.113366) |