Non-Coding RNA Search

Ss1.1-Pig4-TMW8044N01.5

Sequence:


               
               TGGAACCTGGGAAACTTCTGTATCTTATTAGCACCCCAGGCTCGGTGCTCTCTGCCCACC
CCCCACCCCGCCCCTCAGCTTCCTGGTCACTAAATTCAGTGTCGGAACCTGAGTGTGTAA
AGAGGAACTCGGCAGCCTCAGCCCCGGAGGGCAGACACAGTTTAAGGGGATTTTGCCAGG
ATGGTGCAATCTTCGGCTTCTGGCGAGGTGGCCACAACCGCAGTTGGGGAAGAGGCGCAG
GCTCTGCAAGAAGCATTCAGGACCCATCTACAGCCTGAATTTCATTCTGTGATGGAGGGG
ATCCGGAAGGGTTGCTCTTCCAGCCAATTATATCAAGTCATCGGACTCCAAAGGTTCTTT
CTGTTCCTTTATTGTATTTGGGTTCAGAGTCCCCGTCTGGGTTTGTATTATATCTGGCAA
AGGACCTGGGTTCTCATTTTTCTTCTTGGGCTGAGGCTGTAGATCTTGGAAACTCCTAGG
AGAGCATTTTGCTCCTACCAAGGATCAGATACCACAGCCTTAAATAATGGATTTTGTTTC
ACTGTGGCCTGGGCAGAGCTCTTTGCTGCTGCCTCTTGCCCTGCTCATGTGCGGTGATGA
TACATGGGGCATTTCCAGGAGGGAGATGAACCCTGGATCCCCCCAATGGGCCTCTTCTCC
TTGATAAACCCACTTGCTTGTTTCTATTTCTGATTGGCCTTGCTTCCCTTCCTTGCACCA
GCAAATTCCCGGTGTTCACCCAGGCGACTTGTAGAGGGCCTGCTTGGGGTCCTAGGTGAG
CTGTGTCCTCCAAGCTTCTATGGCTCCCCCATCGCCTGCAATATTCAGTGCATGACCACT
GTCATCCCAGAAGGCTTCTGAGGGGAGGGTGAGTGCTCTGGCCCCTGGAGGCTGGGTCCC
TCTGCTCTCCCAGGTGTGCTGCCATGGGCTTTGGGAGGGGGAGGCTGCTTCCCAGGCCTC
TCCCAAGGGGGCATCTAGGCGGTCCCGAATCTTTTCCTACCTCACAGGGATGTTGTGAGA
CTTTAGAAGGGATGAGGACAAAGGCCCCTGGAGCTCTTTGTAGAAAAGGCAGAAGAAAGG
TCAAGTGTGGTCTATGCAAAGATGAAATATGGCCTGCTGATGCCGCAGACAAGCACATGC
TCTCTGGGCCTTTCTTGGGCCCCGTGCCAGCCACAGCGCCAGCCACCTCGAGGCCAACCT
GGGGGACTTCCGGATTTCGACATAGAGGTACCAGGCAAACCCCTACTCCGTGCCCTGAAC
GAATTGCTGACCGACAGAGGCGATGGACCCTGCTTTTGAGGATGTACAAACGTGTGTCTG
CGTTGATGTCTGTACTGTAAATTTCTAATTTATCACTGTACAAAAAACAAAAATCTTGGC
TATTTAATTTTTGTATTAAAGGAAAATAAAGTTTTGTTTGTTAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGAACCTGGGAAACTTCTGTATCTTATTAGCACCCCAGGCTCGGTGCTCTCTGCCCACC
CCCCACCCCGCCCCTCAGCTTCCTGGTCACTAAATTCAGTGTCGGAACCTGAGTGTGTAA
AGAGGAACTCGGCAGCCTCAGCCCCGGAGGGCAGACACAGTTTAAGGGGATTTTGCCAGG
ATGGTGCAATCTTCGGCTTCTGGCGAGGTGGCCACAACCGCAGTTGGGGAAGAGGCGCAG
GCTCTGCAAGAAGCATTCAGGACCCATCTACAGCCTGAATTTCATTCTGTGATGGAGGGG
ATCCGGAAGGGTTGCTCTTCCAGCCAATTATATCAAGTCATCGGACTCCAAAGGTTCTTT
CTGTTCCTTTATTGTATTTGGGTTCAGAGTCCCCGTCTGGGTTTGTATTATATCTGGCAA
AGGACCTGGGTTCTCATTTTTCTTCTTGGGCTGAGGCTGTAGATCTTGGAAACTCCTAGG
AGAGCATTTTGCTCCTACCAAGGATCAGATACCACAGCCTTAAATAATGGATTTTGTTTC
ACTGTGGCCTGGGCAGAGCTCTTTGCTGCTGCCTCTTGCCCTGCTCATGTGCGGTGATGA
TACATGGGGCATTTCCAGGAGGGAGATGAACCCTGGATCCCCCCAATGGGCCTCTTCTCC
TTGATAAACCCACTTGCTTGTTTCTATTTCTGATTGGCCTTGCTTCCCTTCCTTGCACCA
GCAAATTCCCGGTGTTCACCCAGGCGACTTGTAGAGGGCCTGCTTGGGGTCCTAGGTGAG
CTGTGTCCTCCAAGCTTCTATGGCTCCCCCATCGCCTGCAATATTCAGTGCATGACCACT
GTCATCCCAGAAGGCTTCTGAGGGGAGGGTGAGTGCTCTGGCCCCTGGAGGCTGGGTCCC
TCTGCTCTCCCAGGTGTGCTGCCATGGGCTTTGGGAGGGGGAGGCTGCTTCCCAGGCCTC
TCCCAAGGGGGCATCTAGGCGGTCCCGAATCTTTTCCTACCTCACAGGGATGTTGTGAGA
CTTTAGAAGGGATGAGGACAAAGGCCCCTGGAGCTCTTTGTAGAAAAGGCAGAAGAAAGG
TCAAGTGTGGTCTATGCAAAGATGAAATATGGCCTGCTGATGCCGCAGACAAGCACATGC
TCTCTGGGCCTTTCTTGGGCCCCGTGCCAGCCACAGCGCCAGCCACCTCGAGGCCAACCT
GGGGGACTTCCGGATTTCGACATAGAGGTACCAGGCAAACCCCTACTCCGTGCCCTGAAC
GAATTGCTGACCGACAGAGGCGATGGACCCTGCTTTTGAGGATGTACAAACGTGTGTCTG
CGTTGATGTCTGTACTGTAAATTTCTAATTTATCACTGTACAAAAAACAAAAATCTTGGC
TATTTAATTTTTGTATTAAAGGAAAATAAAGTTTTGTTTGTTAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               938-1057, - strand, RNAz p=0.842257

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               938-1057, - strand, RNAz p=0.842257

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               30-1423, gnl|bosTau2|chr29 (4146999-4145574)
               

               
               30-1423, gnl|Hg17|chr11 (86336173-86334369)
               

               
               30-1423, gnl|Mm7|chr7 (85348781-85350196)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               30-1423, gnl|bosTau2|chr29 (4146999-4145574)
               

               
               30-1423, gnl|Hg17|chr11 (86336173-86334369)
               

               
               30-1423, gnl|Mm7|chr7 (85348781-85350196)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               pla (0.267344)
               

               
               ute (0.265569)
               

               
               pan (0.23596)
               

               
               nms (0.213858)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pla (0.267344)
               

               
               ute (0.265569)
               

               
               pan (0.23596)
               

               
               nms (0.213858)
               

               
               duo (0.172801)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               lnt (0.142308)
               

               
               che (0.136314)
               

               
               eep (0.122564)
               

               
               cly (0.120642)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	30-1423, gnl\|bosTau2\|chr29 (4146999-4145574)
	30-1423, gnl\|Hg17\|chr11 (86336173-86334369)
	30-1423, gnl\|Mm7\|chr7 (85348781-85350196)

	pla (0.267344)
	ute (0.265569)
	pan (0.23596)
	nms (0.213858)
	duo (0.172801)
	cut (0.169924)
	cki (0.165235)
	lnt (0.142308)
	che (0.136314)
	eep (0.122564)
	cly (0.120642)
	med (0.116252)
	eje (0.0988338)