Non-Coding RNA Search

Ss1.1-Pig4-TMW8044N07.3

Sequence:


               
               GAAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTTGTCCTAACATGAGTGCT
TGTAACAAAATAAACAACAAAAATAAAATAAAAAAGCCAAAAACTACCTTTATCCATACA
TGAAATTATAGATGAGGCCTACAAATTTCTTTAAGGCATCCCTTCCCTCCCCAGATATCA
TCTGATGGCCTGTTATCTGGTGTCACCTCTTATATTGTAAGTTAATACTGAAAGGAAAGA
AAGCACTTAAGTTTCACAGAAGCCGTTATGTTTGTAGTAATGGATCATTGCCTACTAATG
AACTCCATCACTGTACACAGAATGAAGAATAATGCATGTTAATTTTCTTGTATTAAAAAT
GCCGTGATTTGTAAAAAGTCTGTATTTTGCGGAATGTCTGGATTAAGAAGCATTACCAAT
AGGAATGGATCGATAGTTGAATAATGATTTTTTTTATACATAGATATATAAAATACAGCC
AGGAAAACTTAAATTACTTTTTTTAAAAAAAAACTCACAATTTATGTTTTTTCAAATACT
GATCTTAGACCAAGTCAAATTCCCATTTATCATTTAGTTATTTTTTAAGGTTAGAGAAAT
AATTTGTAAATATTTATTTAGACCTTTGATATTTATTAAAGCAATTACACACAATGGAAG
TGAAAGAATCAGGGGAAAAACCTTTTAAAAAGTTTTCTCCAGGTTTGTCAGGGTCACTCT
AAAGATGAAAATGTAACTAAGTCTTCTGTGAAATCGTCCTCCAGTTCTGAGGCTGTTGCA
GGTGGTGGTGACACGAGTTAATCGACAAGCTGCTGCCCAGTGGTGCCCAAAGGCTTGTAG
GACCTGCCTGGTAGCCCCCTTTCAAACACCATCCCTGAACTGTGCAGGGAGCTGGCATTC
TCGTCCCTCCTTGCTGCCATGCGATTAGTCGGTGTTGCCACAGTGCTGTGGTCGGATCAA
GACGTTGTAACCAGGAACACTTACTTTCTCTGATTGTTTTTCAAGTTTTAAAACTTCGAT
CCACCCCTATGAGAACAAGTTATTGTGGAACTATTTTTGGTGTAAAATCATTCCAGAGTG
TGTACTATTTACCAATAGCTGCATGAAAGTAAGATTCGTGTTACTTTGGCTTTTTGTCTC
CGTTGACACGGTTGCACATTTCCAAGTTACTACAGCGTGAAAACTGTGTGTTAAAAAAAA
AAAAAAAACAAATTAAAAAAAGATTGTGGCCTGGTTTTGTAAAAGTTTTAGGTAAAATTA
CAATTGATTGTTTTAGGAACTATTATTAAATTTTTCTGCAAATCATAAAACTATATCAAG
GTGTTGAGCTTAGCCACTCTGCACATTGTAATTATTCATTGTGGCTGTCCAGTTCTATGA
TGCATTCTGGCATTTTGTAAGCTGCTCTGACTAGCAATATATAGATTCATTTAATGTGTT
AACATTGGTTAATAAATGTATTTAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAATGAATATTTAAATTTTAAAGTTTGCACATTTCATCTTTGTCCTAACATGAGTGCT
TGTAACAAAATAAACAACAAAAATAAAATAAAAAAGCCAAAAACTACCTTTATCCATACA
TGAAATTATAGATGAGGCCTACAAATTTCTTTAAGGCATCCCTTCCCTCCCCAGATATCA
TCTGATGGCCTGTTATCTGGTGTCACCTCTTATATTGTAAGTTAATACTGAAAGGAAAGA
AAGCACTTAAGTTTCACAGAAGCCGTTATGTTTGTAGTAATGGATCATTGCCTACTAATG
AACTCCATCACTGTACACAGAATGAAGAATAATGCATGTTAATTTTCTTGTATTAAAAAT
GCCGTGATTTGTAAAAAGTCTGTATTTTGCGGAATGTCTGGATTAAGAAGCATTACCAAT
AGGAATGGATCGATAGTTGAATAATGATTTTTTTTATACATAGATATATAAAATACAGCC
AGGAAAACTTAAATTACTTTTTTTAAAAAAAAACTCACAATTTATGTTTTTTCAAATACT
GATCTTAGACCAAGTCAAATTCCCATTTATCATTTAGTTATTTTTTAAGGTTAGAGAAAT
AATTTGTAAATATTTATTTAGACCTTTGATATTTATTAAAGCAATTACACACAATGGAAG
TGAAAGAATCAGGGGAAAAACCTTTTAAAAAGTTTTCTCCAGGTTTGTCAGGGTCACTCT
AAAGATGAAAATGTAACTAAGTCTTCTGTGAAATCGTCCTCCAGTTCTGAGGCTGTTGCA
GGTGGTGGTGACACGAGTTAATCGACAAGCTGCTGCCCAGTGGTGCCCAAAGGCTTGTAG
GACCTGCCTGGTAGCCCCCTTTCAAACACCATCCCTGAACTGTGCAGGGAGCTGGCATTC
TCGTCCCTCCTTGCTGCCATGCGATTAGTCGGTGTTGCCACAGTGCTGTGGTCGGATCAA
GACGTTGTAACCAGGAACACTTACTTTCTCTGATTGTTTTTCAAGTTTTAAAACTTCGAT
CCACCCCTATGAGAACAAGTTATTGTGGAACTATTTTTGGTGTAAAATCATTCCAGAGTG
TGTACTATTTACCAATAGCTGCATGAAAGTAAGATTCGTGTTACTTTGGCTTTTTGTCTC
CGTTGACACGGTTGCACATTTCCAAGTTACTACAGCGTGAAAACTGTGTGTTAAAAAAAA
AAAAAAAACAAATTAAAAAAAGATTGTGGCCTGGTTTTGTAAAAGTTTTAGGTAAAATTA
CAATTGATTGTTTTAGGAACTATTATTAAATTTTTCTGCAAATCATAAAACTATATCAAG
GTGTTGAGCTTAGCCACTCTGCACATTGTAATTATTCATTGTGGCTGTCCAGTTCTATGA
TGCATTCTGGCATTTTGTAAGCTGCTCTGACTAGCAATATATAGATTCATTTAATGTGTT
AACATTGGTTAATAAATGTATTTAAAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1470, gnl|bosTau2|chr13 (31876050-31877521)
               

               
               1-1470, gnl|Hg17|chr10 (289107-290574)
               

               
               1-1470, gnl|Mm7|chr13 (9599623-9598236)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1470, gnl|bosTau2|chr13 (31876050-31877521)
               

               
               1-1470, gnl|Hg17|chr10 (289107-290574)
               

               
               1-1470, gnl|Mm7|chr13 (9599623-9598236)

Expressed library(ies): 40 entry(ies)

More info

Expressed library(ies): 40 entry(ies)

Help | Less info


               
               csk (0.844476)
               

               
               rec (0.692281)
               

               
               cut (0.679694)
               

               
               ova (0.645661)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 40 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               csk (0.844476)
               

               
               rec (0.692281)
               

               
               cut (0.679694)
               

               
               ova (0.645661)
               

               
               lyg (0.532411)
               

               
               pro (0.512033)
               

               
               tbr (0.462535)
               

               
               ski (0.440205)
               

               
               liv (0.438853)
               

               
               cmu (0.372787)
               

               
               vin (0.332557)
               

               
               cki (0.330469)
               

               
               sme (0.305437)
               

               
               isp (0.300752)
               

               
               lin (0.291206)
               

               
               fce (0.271592)
               

               
               pla (0.267344)
               

               
               kid (0.259471)
               

               
               sug (0.254582)
               

               
               cbe (0.239234)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               spc (0.226732)
               

               
               aor (0.195274)
               

               
               mgm (0.180343)
               

               
               sin (0.174948)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               nco (0.161734)
               

               
               fco (0.157208)
               

               
               spl (0.143184)
               

               
               cst (0.140036)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               cty (0.10408)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	1-1470, gnl\|bosTau2\|chr13 (31876050-31877521)
	1-1470, gnl\|Hg17\|chr10 (289107-290574)
	1-1470, gnl\|Mm7\|chr13 (9599623-9598236)

	csk (0.844476)
	rec (0.692281)
	cut (0.679694)
	ova (0.645661)
	lyg (0.532411)
	pro (0.512033)
	tbr (0.462535)
	ski (0.440205)
	liv (0.438853)
	cmu (0.372787)
	vin (0.332557)
	cki (0.330469)
	sme (0.305437)
	isp (0.300752)
	lin (0.291206)
	fce (0.271592)
	pla (0.267344)
	kid (0.259471)
	sug (0.254582)
	cbe (0.239234)
	mgp (0.230681)
	ece (0.229305)
	spc (0.226732)
	aor (0.195274)
	mgm (0.180343)
	sin (0.174948)
	fhi (0.169578)
	nje (0.16592)
	cje (0.165235)
	nco (0.161734)
	fco (0.157208)
	spl (0.143184)
	cst (0.140036)
	ret (0.128733)
	thg (0.126791)
	ebs (0.118301)
	ecc (0.115035)
	cty (0.10408)
	eje (0.0988338)
	ldo (0.0970026)