Non-Coding RNA Search

Ss1.1-Pig4-TMW8044N13.3

Sequence:


               
               TCTTATATTCAAGGTGACCTTTATAAATATTCCTTCAAGTTTTGTTTTCATAAAATGTAA
AGTATGTAACATTATGTATAGTTCAGTAATTTGAATGTTTGTTCAATATAATGAACTAGA
AGGAATGCAGTTTTCTGTAGATGAATGAACCAAATGGTAACCATTAAACAGTTGCATTTA
TATGTTGCAATACATTTCAGAAGGAGCATTCACTCTGCAGGGAATAAGGTACCTCCTTTA
GCACCTTAGTGCAATTCATTGTGGTGCTATTTGTTTTTACTTGAATTCTTTCTTCAATGG
AAAATGTTTGGTACTGATCTTCCTTTCACAGAACCTCTAATTTTTTTGTTTTTCTATACT
TGAGTTTAAAAGTCCTTTTTGTGTTCCTAATAAGGTATGGTTAGCAAAAGATATTCTTCT
AAATCTGAGCACTTTAAAAAAGATTCCAAATTTTTAGACTTGCTTCACGTTAAGTGCACA
TCATTCTGATTTTTCATTTGTTTTTAGTGGAAAATGGATGCAATTAAAAAAATCACATAT
TATCACATATTTTGGACATCCCTACATATTTAATGCTTTTAAAATAAGGTAAAAACATTT
TATATGCAAACAGACTATATTTGTTAAAAGTTAAATTCCAGAAACATACACAAGATTCAC
AATTCCTACTGTTTTTTTAAGTCACAAGAAAATATTTATTTGATTTTAATTATCTCCAAA
ATGTTAACATCATGCATTACTCATTTTTGCACTTAAAACTTTTCATACTTATTCCAAGAT
GGTTTGAAGGTCCAAGAATGAAAATAAATTAGGGAGAATAACGTTTAACAGTCATAAAAT
GTTATGTTGTATTAGAGCTTAGCTAAAGAAATGTTTTTTTAAATGTATCCTGATAAATGT
CTCAGAATGCATCTGTCAAGTTTTTTAGAGTGACCAGTATTTTAAACTTTTTCCAGGATT
TTAAATAATTTGAATGAGTTTAGAGACCTTTATTGAAGAGATGATTTATTTAAAATTCCA
AAGCATCAACCATAAGGAAAATTTTATAATAAACATCTTTAAAGCTGCATCTTCCATGCT
GATACATATACTACATTGCATATGTTGAGATTTTAGTAAATACTTTTTATAATGAAGAAA
ATAATCATAGTTAAAAATTCAAAGACCAATTACTACCTTATGTAGGTCTATTGAATTTTG
TGGAAAGAGTGGGTAAAGGTTTATTGAATAGAAATTGATCCCTATTATTTTGGGAATGTT
TGTTGATCAAGTGACCTAGAGATTCTATTATCCTGTCTGATCATATGAGGTTTTGAGACA
CTGAAAGGCAATAGCACTGTTGCTTTTAGGCTCCCTTACTTTGTGGGAACATGGTATACT
TTCAGGAATATATTGCAGATTTTCAGTGGGGGAAAAAATGGTAAATTGAAGCTTGGGATT
TATCAATTTTGCTGGGTTACACTGGAGATAGGAAGACTACTGAAAACTTTTGCGGTTATT
TGGAATTTGTTTTTAACTTCTTTCCTCAAGAATAGTAGAGATTATCCATTCCAAAATGTC
TTTTATCTGATCACAGAGGACAAGCAAATGTCAGTATCTCTTATGATGGTGAAAATAAGG
AGTTATTTAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTTATATTCAAGGTGACCTTTATAAATATTCCTTCAAGTTTTGTTTTCATAAAATGTAA
AGTATGTAACATTATGTATAGTTCAGTAATTTGAATGTTTGTTCAATATAATGAACTAGA
AGGAATGCAGTTTTCTGTAGATGAATGAACCAAATGGTAACCATTAAACAGTTGCATTTA
TATGTTGCAATACATTTCAGAAGGAGCATTCACTCTGCAGGGAATAAGGTACCTCCTTTA
GCACCTTAGTGCAATTCATTGTGGTGCTATTTGTTTTTACTTGAATTCTTTCTTCAATGG
AAAATGTTTGGTACTGATCTTCCTTTCACAGAACCTCTAATTTTTTTGTTTTTCTATACT
TGAGTTTAAAAGTCCTTTTTGTGTTCCTAATAAGGTATGGTTAGCAAAAGATATTCTTCT
AAATCTGAGCACTTTAAAAAAGATTCCAAATTTTTAGACTTGCTTCACGTTAAGTGCACA
TCATTCTGATTTTTCATTTGTTTTTAGTGGAAAATGGATGCAATTAAAAAAATCACATAT
TATCACATATTTTGGACATCCCTACATATTTAATGCTTTTAAAATAAGGTAAAAACATTT
TATATGCAAACAGACTATATTTGTTAAAAGTTAAATTCCAGAAACATACACAAGATTCAC
AATTCCTACTGTTTTTTTAAGTCACAAGAAAATATTTATTTGATTTTAATTATCTCCAAA
ATGTTAACATCATGCATTACTCATTTTTGCACTTAAAACTTTTCATACTTATTCCAAGAT
GGTTTGAAGGTCCAAGAATGAAAATAAATTAGGGAGAATAACGTTTAACAGTCATAAAAT
GTTATGTTGTATTAGAGCTTAGCTAAAGAAATGTTTTTTTAAATGTATCCTGATAAATGT
CTCAGAATGCATCTGTCAAGTTTTTTAGAGTGACCAGTATTTTAAACTTTTTCCAGGATT
TTAAATAATTTGAATGAGTTTAGAGACCTTTATTGAAGAGATGATTTATTTAAAATTCCA
AAGCATCAACCATAAGGAAAATTTTATAATAAACATCTTTAAAGCTGCATCTTCCATGCT
GATACATATACTACATTGCATATGTTGAGATTTTAGTAAATACTTTTTATAATGAAGAAA
ATAATCATAGTTAAAAATTCAAAGACCAATTACTACCTTATGTAGGTCTATTGAATTTTG
TGGAAAGAGTGGGTAAAGGTTTATTGAATAGAAATTGATCCCTATTATTTTGGGAATGTT
TGTTGATCAAGTGACCTAGAGATTCTATTATCCTGTCTGATCATATGAGGTTTTGAGACA
CTGAAAGGCAATAGCACTGTTGCTTTTAGGCTCCCTTACTTTGTGGGAACATGGTATACT
TTCAGGAATATATTGCAGATTTTCAGTGGGGGAAAAAATGGTAAATTGAAGCTTGGGATT
TATCAATTTTGCTGGGTTACACTGGAGATAGGAAGACTACTGAAAACTTTTGCGGTTATT
TGGAATTTGTTTTTAACTTCTTTCCTCAAGAATAGTAGAGATTATCCATTCCAAAATGTC
TTTTATCTGATCACAGAGGACAAGCAAATGTCAGTATCTCTTATGATGGTGAAAATAAGG
AGTTATTTAATG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               182-341, - strand, RNAz p=0.922282

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               182-341, - strand, RNAz p=0.922282

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-1632, gnl|bosTau2|chr3 (50452586-50454257)
               

               
               1-1632, gnl|Hg17|chr1 (70439990-70438326)
               

               
               1-1632, gnl|Mm7|chr3 (157914395-157916170)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1632, gnl|bosTau2|chr3 (50452586-50454257)
               

               
               1-1632, gnl|Hg17|chr1 (70439990-70438326)
               

               
               1-1632, gnl|Mm7|chr3 (157914395-157916170)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               aor (0.195274)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               aor (0.195274)
               

               
               sin (0.174948)
               

               
               lin (0.145603)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               ret (0.128733)

	1-1632, gnl\|bosTau2\|chr3 (50452586-50454257)
	1-1632, gnl\|Hg17\|chr1 (70439990-70438326)
	1-1632, gnl\|Mm7\|chr3 (157914395-157916170)

	aor (0.195274)
	sin (0.174948)
	lin (0.145603)
	nca (0.136874)
	kid (0.129735)
	ret (0.128733)