Ss1.1-Pig4-TMW8044N18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGGAACTCCGGGAGAAGTTCATTCTGGCGGACGGAGCCAGTCAGGGCATGGCTGCCT TCCGGCCCCGGGGCCGGAGATCGAGGCCCTCGTCTCGGGGAGCCTCCCCCAACCGATCCA CCTCCGTGTCCAGCCAGGCTGGCCAGGCGGCCACCCCACCCGTCCCCGCCACCAGCACAC CCAAGATTCTCCACCCTTTAACTCGCAATTACGGTAAACCCTGGTTGACAAACAGCAAAG TGTCAACTCCTTGTAAACCAGCAGAGTGCTCAGACTTGCCCATGTCATCTCCAGAGGGAA CGCCCATCCAAGGGAGCAAGCTTCGACTGCCCGGGTACCTATCAGGGAAAGGTTTCCACT CCGGGGAGGACAGCGGCTTGATCACGACCGCAGCCGCCAGGGTGCGGACGCAGTTCCCCG ATCCCAAGAAGACGCCCAGCCGGCCTGGCAGCCGGGCAGGCAGCAAAGCCGGCAGTCGGG CCAGCAGCCGCCGCGGCAGCGATGCATCTGACTTCGACATCTCCGAGATCCAGTCCGTGT GCTCAGACGTGGAGGCCGTGCCCCCCACGCATAGGCCAACGCCGCGGGCGCGCTCTCGGC CGTCCTCGGCCAAGCCTTCCAAAATCCCCACACCCCAGAGGAGGCCAGCCGCCAGCAAAG TGGACAAGTCCTCCAAGAGATAGTGCAGTTGGGTCCCCCCGGCCCTTCCTAGAACGTTTA CTATTTAAGTTGGAAAAGATGTAAAATACGATGTAGAAAATATTGGGAAATATTGCGAGA GGCGCGTTTAAAAATTCTGCAGATGGCCTTATTTGTGTATTTGTCTTTTATTCTCTGTAT AATTTCTGGTCAGCTGTTCGGGGGTGACGGTCACATTGTGGGGTGGGGGGAGAGAGTGGA CAGGCACGTGGAGCCCGGCGGGGTGCCTGATGGAATCAGTCACTGTACCTGCAGGTAAGT CCACGGCCTCTTGCCGCTCACAACCCTCCACCAGGGGCTGGCGTTCAGGATACCTCATGA CACCATCATCTTGATTTTGTGGAAACTCTGAAAAGCCAAAAGACGCCCACAGAGTTACTA TATTCTGAAATGACCTAAGTGTAAACTGAGATGGCGGCACAGAGACCCACACACTCACTG CAGTTCTCAGCATCATCCCTGGCAGAGAACCCCCAGGAAGTTCCTTTCAGCTCCTGCCCC ATTTCCGGGCCACTGCTTGGCCCGAGGCCGGAGGCGTCCTGGACATGAGACCCGTTATCC TGTGTAAGAGCATCATTATAAAGCGCATTCACGTAAATGTCAGGTTTTCTTTTGCTTGAG TGGAAGTAGCACCTGCATCCTCGAACTCATTTTGTATCAGAGCAGTTTCGCTTGCAGAAA AGCTATGAAATAAAACGTGTCCCTTAACTACATTGCTATGGAATTAATTCTTTTTTCCCC CTGGGGGGAGAAAAAATCAGTGTATTTTTTTATGAGCAATATCCGTTTGGAGTGACCAAA AGAGACTTTAAAAAATGGGTTTATTTTGATTTCTCATCTGAAATAATCATGTTCTGGTAT TATATCTATATTTAATAAATATATACATTTTAATTTATTATGTATACTCACATACTATAG AAAGATATCAGTATGCATTTAATAAAACATATTCACTTGAAAAAAAAAAATACCTGCTTA TTTAAAGTGAACTTTTGCTATTTATTTGTTTTAAATAAAAGTTATGTGGACAATAGAAAA AAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGGAACTCCGGGAGAAGTTCATTCTGGCGGACGGAGCCAGTCAGGGCATGGCTGCCT TCCGGCCCCGGGGCCGGAGATCGAGGCCCTCGTCTCGGGGAGCCTCCCCCAACCGATCCA CCTCCGTGTCCAGCCAGGCTGGCCAGGCGGCCACCCCACCCGTCCCCGCCACCAGCACAC CCAAGATTCTCCACCCTTTAACTCGCAATTACGGTAAACCCTGGTTGACAAACAGCAAAG TGTCAACTCCTTGTAAACCAGCAGAGTGCTCAGACTTGCCCATGTCATCTCCAGAGGGAA CGCCCATCCAAGGGAGCAAGCTTCGACTGCCCGGGTACCTATCAGGGAAAGGTTTCCACT CCGGGGAGGACAGCGGCTTGATCACGACCGCAGCCGCCAGGGTGCGGACGCAGTTCCCCG ATCCCAAGAAGACGCCCAGCCGGCCTGGCAGCCGGGCAGGCAGCAAAGCCGGCAGTCGGG CCAGCAGCCGCCGCGGCAGCGATGCATCTGACTTCGACATCTCCGAGATCCAGTCCGTGT GCTCAGACGTGGAGGCCGTGCCCCCCACGCATAGGCCAACGCCGCGGGCGCGCTCTCGGC CGTCCTCGGCCAAGCCTTCCAAAATCCCCACACCCCAGAGGAGGCCAGCCGCCAGCAAAG TGGACAAGTCCTCCAAGAGATAGTGCAGTTGGGTCCCCCCGGCCCTTCCTAGAACGTTTA CTATTTAAGTTGGAAAAGATGTAAAATACGATGTAGAAAATATTGGGAAATATTGCGAGA GGCGCGTTTAAAAATTCTGCAGATGGCCTTATTTGTGTATTTGTCTTTTATTCTCTGTAT AATTTCTGGTCAGCTGTTCGGGGGTGACGGTCACATTGTGGGGTGGGGGGAGAGAGTGGA CAGGCACGTGGAGCCCGGCGGGGTGCCTGATGGAATCAGTCACTGTACCTGCAGGTAAGT CCACGGCCTCTTGCCGCTCACAACCCTCCACCAGGGGCTGGCGTTCAGGATACCTCATGA CACCATCATCTTGATTTTGTGGAAACTCTGAAAAGCCAAAAGACGCCCACAGAGTTACTA TATTCTGAAATGACCTAAGTGTAAACTGAGATGGCGGCACAGAGACCCACACACTCACTG CAGTTCTCAGCATCATCCCTGGCAGAGAACCCCCAGGAAGTTCCTTTCAGCTCCTGCCCC ATTTCCGGGCCACTGCTTGGCCCGAGGCCGGAGGCGTCCTGGACATGAGACCCGTTATCC TGTGTAAGAGCATCATTATAAAGCGCATTCACGTAAATGTCAGGTTTTCTTTTGCTTGAG TGGAAGTAGCACCTGCATCCTCGAACTCATTTTGTATCAGAGCAGTTTCGCTTGCAGAAA AGCTATGAAATAAAACGTGTCCCTTAACTACATTGCTATGGAATTAATTCTTTTTTCCCC CTGGGGGGAGAAAAAATCAGTGTATTTTTTTATGAGCAATATCCGTTTGGAGTGACCAAA AGAGACTTTAAAAAATGGGTTTATTTTGATTTCTCATCTGAAATAATCATGTTCTGGTAT TATATCTATATTTAATAAATATATACATTTTAATTTATTATGTATACTCACATACTATAG AAAGATATCAGTATGCATTTAATAAAACATATTCACTTGAAAAAAAAAAATACCTGCTTA TTTAAAGTGAACTTTTGCTATTTATTTGTTTTAAATAAAAGTTATGTGGACAATAGAAAA AAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1316-1409, + strand, RNAz p=0.692725 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1316-1409, + strand, RNAz p=0.692725 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_183380, + |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 1-185, gnl|bosTau2|chr23 (1411800-1411616) | |
| 1-185, gnl|canFam2|chr12 (26723301-26723506) | |
| 1-185, gnl|danRer3|chr19 (67725167-67725384) | |
| 1-185, gnl|dasNov1|scaffold_61 (34983-35188) | |
| 1-185, gnl|echTel1|scaffold_309957 (215233-215028) | |
| 1-185, gnl|fr1|chrUn (83352915-83353111) | |
| 1-185, gnl|galGal2|chr3 (85438128-85437923) | |
| 1-185, gnl|hg17|chr6 (56436320-56436525) | |
| 1-185, gnl|Hg17|chr6 (56436506-56436322) | |
| 1-185, gnl|loxAfr1|scaffold_217 (90302-90507) | |
| 1-185, gnl|mm7|chr1 (34526260-34526052) | |
| 1-185, gnl|Mm7|chr1 (34526069-34526256) | |
| 1-185, gnl|monDom2|scaffold_0 (179009526-179009318) | |
| 1-185, gnl|oryCun1|scaffold_179077 (3449-3672) | |
| 1-185, gnl|panTro1|chr5 (57727726-57727931) | |
| 1-185, gnl|rheMac2|chr4 (56105224-56105429) | |
| 1-185, gnl|rn3|chr9 (33047425-33047217) | |
| 1-185, gnl|tetNig1|chr17 (4354692-4354493) | |
| 1-185, gnl|xenTro1|scaffold_833 (196274-196472) | |
| 420-1199, gnl|bosTau2|chr23 (1406356-1405591) | |
| 420-1199, gnl|Hg17|chr6 (56432025-56431233) | |
| 420-1199, gnl|Mm7|chr1 (34530553-34531368) | |
| 1200-1730, gnl|bosTau2|chr23 (1405563-1405028) | |
| 1200-1730, gnl|Hg17|chr6 (56431205-56430685) | |
| 1200-1730, gnl|Mm7|chr1 (34531396-34531940) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-185, gnl|bosTau2|chr23 (1411800-1411616) | |
| 1-185, gnl|canFam2|chr12 (26723301-26723506) | |
| 1-185, gnl|danRer3|chr19 (67725167-67725384) | |
| 1-185, gnl|dasNov1|scaffold_61 (34983-35188) | |
| 1-185, gnl|echTel1|scaffold_309957 (215233-215028) | |
| 1-185, gnl|fr1|chrUn (83352915-83353111) | |
| 1-185, gnl|galGal2|chr3 (85438128-85437923) | |
| 1-185, gnl|hg17|chr6 (56436320-56436525) | |
| 1-185, gnl|Hg17|chr6 (56436506-56436322) | |
| 1-185, gnl|loxAfr1|scaffold_217 (90302-90507) | |
| 1-185, gnl|mm7|chr1 (34526260-34526052) | |
| 1-185, gnl|Mm7|chr1 (34526069-34526256) | |
| 1-185, gnl|monDom2|scaffold_0 (179009526-179009318) | |
| 1-185, gnl|oryCun1|scaffold_179077 (3449-3672) | |
| 1-185, gnl|panTro1|chr5 (57727726-57727931) | |
| 1-185, gnl|rheMac2|chr4 (56105224-56105429) | |
| 1-185, gnl|rn3|chr9 (33047425-33047217) | |
| 1-185, gnl|tetNig1|chr17 (4354692-4354493) | |
| 1-185, gnl|xenTro1|scaffold_833 (196274-196472) | |
| 420-1199, gnl|bosTau2|chr23 (1406356-1405591) | |
| 420-1199, gnl|Hg17|chr6 (56432025-56431233) | |
| 420-1199, gnl|Mm7|chr1 (34530553-34531368) | |
| 1200-1730, gnl|bosTau2|chr23 (1405563-1405028) | |
| 1200-1730, gnl|Hg17|chr6 (56431205-56430685) | |
| 1200-1730, gnl|Mm7|chr1 (34531396-34531940) |
| Expressed library(ies): 30 entry(ies) | More info |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
| fcc (0.988924) | |
| spc (0.680195) | |
| cki (0.495704) | |
| lun (0.451467) | |
| mas (0.42061) | |
| che (0.408942) | |
| aor (0.390549) | |
| bla (0.373042) | |
| fbs (0.350693) | |
| sme (0.305437) | |
| isp (0.300752) | |
| ldo (0.291008) | |
| csk (0.281492) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 30 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fcc (0.988924) | |
| spc (0.680195) | |
| cki (0.495704) | |
| lun (0.451467) | |
| mas (0.42061) | |
| che (0.408942) | |
| aor (0.390549) | |
| bla (0.373042) | |
| fbs (0.350693) | |
| sme (0.305437) | |
| isp (0.300752) | |
| ldo (0.291008) | |
| csk (0.281492) | |
| hea (0.204499) | |
| nlu (0.191681) | |
| cut (0.169924) | |
| fco (0.157208) | |
| bfe (0.149858) | |
| hyp (0.142837) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| cov (0.132153) | |
| kid (0.129735) | |
| ova (0.129132) | |
| sug (0.127291) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| ecc (0.115035) | |
| eje (0.0988338) |