Non-Coding RNA Search

Ss1.1-Pig4-TMW8044O13.5

Sequence:


               
               TGGGCTGGGCTGGGCGCCGGCTTGGCTGAGGAAGCTGGACCCCGCTTGCAGTCATAAAGA
AGGTGCAAAAAGACGGGCAGAGGAGAGTGACAGACGTGCCCAGTGCTTAGCTTCCTGAGG
CGGTGTTAGCACAGCCGGGACTGATGGCTTTGTGCCCAGGCTGGAGAGCATTTGCATTGT
TTCCCTTTAACCGCTGTGGTGTCCTTGGGAAAGCTGTGAGAAGCACTGGTCTTCCCTTGT
TTCCCTGGGGCCACTGCCCATGGAGAGGAACTGGAAGCTTCCTGGACCCCGAGATGAAAG
CCTTCCTGGAGGAGCACACTGAAGTCACCAGAAGTGGCAGCCTCACCCCTGAAATCCAGT
TGCGGCTTTTGACTCCCAGATGCAAGTTCTGGTGGGAGAGAGCAGACTTGTGGCCCCACA
GCGATCCTTACTGGGCAATCTACTGGCCTGGAGGCCAGGCCTTGTCTAGTTGCAGGAATG
GCTATTACACTAAATTGTGAATTGAACCGACTGAATCCTTTTCCTGTTTTAACCAAAAAC
ATTTTGGATTTGGCACAAGATAAGTGGGACCTTGTTTTGCTTGGAGATATGTTTTATGAT
GAAGACCTTGCAGACAGTCTTCATCAGTGGCTGAAGAATTGCTGTCAGGCCCACAGAACT
CGAGTACTGATTGGTGATCCTGGACGACCCCAGTTCAGTGGACACAGCATTCAGCATCAG
CTGCTCAAAGTGGCAGAATACTCACTTCCAGAGCCTACTAGGCAGGAAAACAATGGACTG
ACAACAAGCACAGTGTGGGATTTTCAGCCTTGAGTTATTGAAGTACTTCCATATGGACAG
AGCCATGTTTGAGTTTAACCCTAAAAAGACTCTCCAGTTCAAAACAGACAATTTGTGTTA
AATCTGGCAGGTCTCAGTGCCAAAATTTGAAGGTTTACGTTTTGTCAGCCTTTGTCATAT
AACTTGTTCTGCATTAAGCCAAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGGCTGGGCTGGGCGCCGGCTTGGCTGAGGAAGCTGGACCCCGCTTGCAGTCATAAAGA
AGGTGCAAAAAGACGGGCAGAGGAGAGTGACAGACGTGCCCAGTGCTTAGCTTCCTGAGG
CGGTGTTAGCACAGCCGGGACTGATGGCTTTGTGCCCAGGCTGGAGAGCATTTGCATTGT
TTCCCTTTAACCGCTGTGGTGTCCTTGGGAAAGCTGTGAGAAGCACTGGTCTTCCCTTGT
TTCCCTGGGGCCACTGCCCATGGAGAGGAACTGGAAGCTTCCTGGACCCCGAGATGAAAG
CCTTCCTGGAGGAGCACACTGAAGTCACCAGAAGTGGCAGCCTCACCCCTGAAATCCAGT
TGCGGCTTTTGACTCCCAGATGCAAGTTCTGGTGGGAGAGAGCAGACTTGTGGCCCCACA
GCGATCCTTACTGGGCAATCTACTGGCCTGGAGGCCAGGCCTTGTCTAGTTGCAGGAATG
GCTATTACACTAAATTGTGAATTGAACCGACTGAATCCTTTTCCTGTTTTAACCAAAAAC
ATTTTGGATTTGGCACAAGATAAGTGGGACCTTGTTTTGCTTGGAGATATGTTTTATGAT
GAAGACCTTGCAGACAGTCTTCATCAGTGGCTGAAGAATTGCTGTCAGGCCCACAGAACT
CGAGTACTGATTGGTGATCCTGGACGACCCCAGTTCAGTGGACACAGCATTCAGCATCAG
CTGCTCAAAGTGGCAGAATACTCACTTCCAGAGCCTACTAGGCAGGAAAACAATGGACTG
ACAACAAGCACAGTGTGGGATTTTCAGCCTTGAGTTATTGAAGTACTTCCATATGGACAG
AGCCATGTTTGAGTTTAACCCTAAAAAGACTCTCCAGTTCAAAACAGACAATTTGTGTTA
AATCTGGCAGGTCTCAGTGCCAAAATTTGAAGGTTTACGTTTTGTCAGCCTTTGTCATAT
AACTTGTTCTGCATTAAGCCAAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28422333|gb|AAH46911.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28422333|gb|AAH46911.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               507-706, - strand, RNAz p=0.775407

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               507-706, - strand, RNAz p=0.775407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               468-984, gnl|bosTau2|chr5 (45980052-45979548)
               

               
               468-984, gnl|Hg17|chr12 (31711846-31712386)
               

               
               468-984, gnl|Mm7|chr6 (149228659-149229069)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               468-984, gnl|bosTau2|chr5 (45980052-45979548)
               

               
               468-984, gnl|Hg17|chr12 (31711846-31712386)
               

               
               468-984, gnl|Mm7|chr6 (149228659-149229069)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               ill (0.175593)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ill (0.175593)
               

               
               mga (0.160205)
               

               
               lun (0.150489)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               ldo (0.0970026)

	468-984, gnl\|bosTau2\|chr5 (45980052-45979548)
	468-984, gnl\|Hg17\|chr12 (31711846-31712386)
	468-984, gnl\|Mm7\|chr6 (149228659-149229069)

	ill (0.175593)
	mga (0.160205)
	lun (0.150489)
	pgl (0.118483)
	med (0.116252)
	ldo (0.0970026)