Ss1.1-Pig4-TMW8044O22.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTGTCGTCCGCGCTCCGACTCTAGGCTGTGGCGGTCGGTGCGGAGATTCAGGCATGAAGT CAGGTTAGGGGACTTCTCCCGCAGCAAGGCGGCAGGGGAGCCTATTTGTGTTGCGAGGTC AGGCTTCCAGGTGATTTTAAAGCGAGATGCTGCTCTCCATAGGGATGCTCATGCTGTCGG CCACACAAGTCTATACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTG TAGAAGCAGACGTTTTAGCATATAATTTTGAAAATGCATCTCAGACATTTGATGACCTTC CAGCAAGATTTGGTTATAGACTTCCGGCTGAAGGTTTAAAGGGTTTTTTGATTAACTCAA AACCAGAGAATGCCTGTGAACCCATAGTGCCTCCTCCACTAAAAGACAATTCTTCTGGCA CTTTCATCGTGTTAATTAGAAGACTTGATTGTAATTTTGATGAAAAGGTTTTAAATGCAC AGAGAGCAGGGTACAAAGCAGCCATAGTTCACAATGTTGATTCTGATGACCTCATTAGCA TGGGATCCAACGACATTGAAGTACTAAAGAAAATTGACATTCCATCTGTCTTTATTGGTG AATCATCAGCTAATTCCCTGAAAGATGAATTCACATATGAAAAAGGGGGCCACATTATCT TAGTTCCGGAATTTAGTCTTCCTCTGGAATACTACCTAATCCCCTTCCTTATCATAGTGG GCATCTGTCTCATCTTGATAGTCATTTTCATGATCACAAAATTTGTCCAGGACAGACATA GAGCTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTCCCTATACATAAATTCA AAAAAGGAGATGAGTATGATGTATGTGCCATTTGTTTGGATGAATATGAAGATGGAGACA AGCTCAGAATCCTTCCCTGTTCCCATGCTTATCATTGCAAGTGTGTAGATCCTTGGCTAA CTAAAACCAAAAAAACCTGTCCGGTCTGCAAGCAAAAAGTTGTACCTTCTCAAGGTGATT CAGACTCTGACACAGATAGTAGTCAAGAAGAAAATGAAGTGTCAGAACACACCCCTTTAC TTAGACCTTTGGCTTCTGTCAGCACCCAGTCATTTGGGGCTTTGTCTGAATCCCGCTCAC ATCCGAACATGACAGAATCTTCAGACTATGAGGAAGATGACAATGAAGATACCGACAGTA GTGACGCAGAAAATGAAATCAATGAACATAGTGTTGTGGTCCAGCTGCAGCCTAATGGTG AACGGGATTACAACATAGCAAATACTGTTTGACCTTCAGAGGGTATTGGGTTTTATTTCC CTTTAAGGTGTTTATTTAGGCATATAGTTTGATTTTTTTGCTCCCTTCAGAGATTTCTGT AGAAATAACTTATTTTCTAGTATTCTACAGTTTAATCAGATTACTGAAACAGTTTTTTTT CATCTGGTATTTATCTGCAGGAGTGTACTTCATTTCACTGATAACTAATAATAGACTGGT GCTGTAACTCAAGCATCAAATCAACTCTTCTTTTGGAATGAATATAGCCAAAACATTAAA AAAAAAAAAATTCCTCAGTATAGCTTGCAATTAAGACCTACATCACAGTATGCAAGTGTT TCATGTTTTTATACACAAGGCCAGTGCTGTGACCACCTAGCATGAACTAACAGGCCAACT CCCATCCCCATAAAGTTACCTAGAGTGGTTGAGCTGGAATAGGCTTGTTCTGGTATTTCC CAAAATTGCCATCATTAGTGAGAAGTAACAAGGTAATTTAGCATTTTTCTTCCTATCAGA ACCAGAAGGAAACTCAAAGCTGTCTTTTTCCTATTTCCAAGCAGTCTTATCTTGATAGGA ATGGTGTGTACTAGGGCAGATTTCAAAAGGTTTTTTTTTTTTTTTTAAGGTTTTTACTAC TATAGTGTTATGTATGAATTTGATTCATCAGCTAAAGTAATGTCTCTGGACTTAACTGAA CTTCAGTATCCTAAAAGATTTTGTGTTGTGATCAAAGCAAAAAGATGCTGTGTAAAAATA CTATACTTTGGCAATTGTTAATACTCAGATCATATACCTCTTAATAAAGAGCATCTTATG CTAATAAGCCCTGCTAAACTATGTACAGAGGAAACTGTTCAAGTATTGATTTGAAAATAC TGCTTATGTTTAACAGAACTAATGATGTATTTAAACAATGTATTATGAAAAGCTAAATTA TACATTATTGTAACTATGTAGAAAATATAGACTTTATGTATAATCGAAATGCTAAGAATT TTTATATGGCCTTGTATGAAGGGAGTTTGAATGTTAATAAACACATTTTCCACTTTAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTGTCGTCCGCGCTCCGACTCTAGGCTGTGGCGGTCGGTGCGGAGATTCAGGCATGAAGT CAGGTTAGGGGACTTCTCCCGCAGCAAGGCGGCAGGGGAGCCTATTTGTGTTGCGAGGTC AGGCTTCCAGGTGATTTTAAAGCGAGATGCTGCTCTCCATAGGGATGCTCATGCTGTCGG CCACACAAGTCTATACCATCTTGACTGTCCAGCTCTTTGCATTCTTAAACCTACTGCCTG TAGAAGCAGACGTTTTAGCATATAATTTTGAAAATGCATCTCAGACATTTGATGACCTTC CAGCAAGATTTGGTTATAGACTTCCGGCTGAAGGTTTAAAGGGTTTTTTGATTAACTCAA AACCAGAGAATGCCTGTGAACCCATAGTGCCTCCTCCACTAAAAGACAATTCTTCTGGCA CTTTCATCGTGTTAATTAGAAGACTTGATTGTAATTTTGATGAAAAGGTTTTAAATGCAC AGAGAGCAGGGTACAAAGCAGCCATAGTTCACAATGTTGATTCTGATGACCTCATTAGCA TGGGATCCAACGACATTGAAGTACTAAAGAAAATTGACATTCCATCTGTCTTTATTGGTG AATCATCAGCTAATTCCCTGAAAGATGAATTCACATATGAAAAAGGGGGCCACATTATCT TAGTTCCGGAATTTAGTCTTCCTCTGGAATACTACCTAATCCCCTTCCTTATCATAGTGG GCATCTGTCTCATCTTGATAGTCATTTTCATGATCACAAAATTTGTCCAGGACAGACATA GAGCTAGAAGAAACAGACTTCGTAAAGATCAACTTAAGAAACTCCCTATACATAAATTCA AAAAAGGAGATGAGTATGATGTATGTGCCATTTGTTTGGATGAATATGAAGATGGAGACA AGCTCAGAATCCTTCCCTGTTCCCATGCTTATCATTGCAAGTGTGTAGATCCTTGGCTAA CTAAAACCAAAAAAACCTGTCCGGTCTGCAAGCAAAAAGTTGTACCTTCTCAAGGTGATT CAGACTCTGACACAGATAGTAGTCAAGAAGAAAATGAAGTGTCAGAACACACCCCTTTAC TTAGACCTTTGGCTTCTGTCAGCACCCAGTCATTTGGGGCTTTGTCTGAATCCCGCTCAC ATCCGAACATGACAGAATCTTCAGACTATGAGGAAGATGACAATGAAGATACCGACAGTA GTGACGCAGAAAATGAAATCAATGAACATAGTGTTGTGGTCCAGCTGCAGCCTAATGGTG AACGGGATTACAACATAGCAAATACTGTTTGACCTTCAGAGGGTATTGGGTTTTATTTCC CTTTAAGGTGTTTATTTAGGCATATAGTTTGATTTTTTTGCTCCCTTCAGAGATTTCTGT AGAAATAACTTATTTTCTAGTATTCTACAGTTTAATCAGATTACTGAAACAGTTTTTTTT CATCTGGTATTTATCTGCAGGAGTGTACTTCATTTCACTGATAACTAATAATAGACTGGT GCTGTAACTCAAGCATCAAATCAACTCTTCTTTTGGAATGAATATAGCCAAAACATTAAA AAAAAAAAAATTCCTCAGTATAGCTTGCAATTAAGACCTACATCACAGTATGCAAGTGTT TCATGTTTTTATACACAAGGCCAGTGCTGTGACCACCTAGCATGAACTAACAGGCCAACT CCCATCCCCATAAAGTTACCTAGAGTGGTTGAGCTGGAATAGGCTTGTTCTGGTATTTCC CAAAATTGCCATCATTAGTGAGAAGTAACAAGGTAATTTAGCATTTTTCTTCCTATCAGA ACCAGAAGGAAACTCAAAGCTGTCTTTTTCCTATTTCCAAGCAGTCTTATCTTGATAGGA ATGGTGTGTACTAGGGCAGATTTCAAAAGGTTTTTTTTTTTTTTTTAAGGTTTTTACTAC TATAGTGTTATGTATGAATTTGATTCATCAGCTAAAGTAATGTCTCTGGACTTAACTGAA CTTCAGTATCCTAAAAGATTTTGTGTTGTGATCAAAGCAAAAAGATGCTGTGTAAAAATA CTATACTTTGGCAATTGTTAATACTCAGATCATATACCTCTTAATAAAGAGCATCTTATG CTAATAAGCCCTGCTAAACTATGTACAGAGGAAACTGTTCAAGTATTGATTTGAAAATAC TGCTTATGTTTAACAGAACTAATGATGTATTTAAACAATGTATTATGAAAAGCTAAATTA TACATTATTGTAACTATGTAGAAAATATAGACTTTATGTATAATCGAAATGCTAAGAATT TTTATATGGCCTTGTATGAAGGGAGTTTGAATGTTAATAAACACATTTTCCACTTTAAAA AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 143-260, - strand, RNAz p=0.96671 | |
| 335-454, + strand, RNAz p=0.806972 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 143-260, - strand, RNAz p=0.96671 | |
| 335-454, + strand, RNAz p=0.806972 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 124-260, gnl|bosTau2|chr21 (44248488-44248352) | |
| 124-260, gnl|Hg17|chr3 (151046489-151046625) | |
| 124-260, gnl|Mm7|chr3 (57894044-57894176) | |
| 335-469, gnl|bosTau2|chr21 (44226907-44226773) | |
| 335-469, gnl|canFam2|chr23 (47642264-47642537) | |
| 335-469, gnl|canFam2|chr37 (33630465-33630582) | |
| 335-469, gnl|dasNov1|scaffold_115256 (4985-5116) | |
| 335-469, gnl|dasNov1|scaffold_185388 (4-247) | |
| 335-469, gnl|echTel1|scaffold_289257 (3342-3065) | |
| 335-469, gnl|hg17|chr3 (151072400-151072668) | |
| 335-469, gnl|Hg17|chr3 (151072508-151072641) | |
| 335-469, gnl|hg17|chr8 (1344289-1344425) | |
| 335-469, gnl|loxAfr1|scaffold_14051 (16219-16487) | |
| 335-469, gnl|loxAfr1|scaffold_42768 (13166-13256) | |
| 335-469, gnl|mm7|chr3 (57908851-57908980) | |
| 335-469, gnl|mm7|chr3 (57908740-57909004) | |
| 335-469, gnl|Mm7|chr3 (57908846-57908979) | |
| 335-469, gnl|monDom2|scaffold_28 (21514204-21514488) | |
| 335-469, gnl|monDom2|scaffold_8 (89591797-89591666) | |
| 335-469, gnl|oryCun1|scaffold_210491 (43438-43307) | |
| 335-469, gnl|oryCun1|scaffold_210491 (43544-43290) | |
| 335-469, gnl|panTro1|chr2 (154174640-154174908) | |
| 335-469, gnl|panTro1|chr7 (1399451-1399587) | |
| 335-469, gnl|rheMac2|chr2 (137909917-137909651) | |
| 335-469, gnl|rheMac2|chr8 (1247950-1248087) | |
| 335-469, gnl|rn3|chr2 (146981320-146981449) | |
| 335-469, gnl|rn3|chr2 (146981195-146981478) | |
| 744-857, gnl|bosTau2|chr1 (75896794-75896907) | |
| 744-857, gnl|canFam2|chr23 (47692137-47692262) | |
| 744-857, gnl|dasNov1|scaffold_57468 (304-430) | |
| 744-857, gnl|echTel1|scaffold_211377 (4522-4396) | |
| 744-857, gnl|fr1|chrUn (160275458-160275582) | |
| 744-857, gnl|galGal2|chr9 (23202082-23201950) | |
| 744-857, gnl|hg17|chr3 (151121590-151121719) | |
| 744-857, gnl|Hg17|chr3 (151121611-151121724) | |
| 744-857, gnl|loxAfr1|scaffold_8954 (10600-10728) | |
| 744-857, gnl|mm7|chr3 (57949594-57949726) | |
| 744-857, gnl|Mm7|chr3 (57949618-57949731) | |
| 744-857, gnl|monDom2|scaffold_28 (21579638-21579763) | |
| 744-857, gnl|oryCun1|scaffold_130178 (714-584) | |
| 744-857, gnl|panTro1|chr2 (154225069-154225198) | |
| 744-857, gnl|rheMac2|chr2 (137848882-137848753) | |
| 744-857, gnl|rn3|chr2 (146997685-146997817) | |
| 744-857, gnl|tetNig1|chrUn_random (102395466-102395569) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 124-260, gnl|bosTau2|chr21 (44248488-44248352) | |
| 124-260, gnl|Hg17|chr3 (151046489-151046625) | |
| 124-260, gnl|Mm7|chr3 (57894044-57894176) | |
| 335-469, gnl|bosTau2|chr21 (44226907-44226773) | |
| 335-469, gnl|canFam2|chr23 (47642264-47642537) | |
| 335-469, gnl|canFam2|chr37 (33630465-33630582) | |
| 335-469, gnl|dasNov1|scaffold_115256 (4985-5116) | |
| 335-469, gnl|dasNov1|scaffold_185388 (4-247) | |
| 335-469, gnl|echTel1|scaffold_289257 (3342-3065) | |
| 335-469, gnl|hg17|chr3 (151072400-151072668) | |
| 335-469, gnl|Hg17|chr3 (151072508-151072641) | |
| 335-469, gnl|hg17|chr8 (1344289-1344425) | |
| 335-469, gnl|loxAfr1|scaffold_14051 (16219-16487) | |
| 335-469, gnl|loxAfr1|scaffold_42768 (13166-13256) | |
| 335-469, gnl|mm7|chr3 (57908851-57908980) | |
| 335-469, gnl|mm7|chr3 (57908740-57909004) | |
| 335-469, gnl|Mm7|chr3 (57908846-57908979) | |
| 335-469, gnl|monDom2|scaffold_28 (21514204-21514488) | |
| 335-469, gnl|monDom2|scaffold_8 (89591797-89591666) | |
| 335-469, gnl|oryCun1|scaffold_210491 (43438-43307) | |
| 335-469, gnl|oryCun1|scaffold_210491 (43544-43290) | |
| 335-469, gnl|panTro1|chr2 (154174640-154174908) | |
| 335-469, gnl|panTro1|chr7 (1399451-1399587) | |
| 335-469, gnl|rheMac2|chr2 (137909917-137909651) | |
| 335-469, gnl|rheMac2|chr8 (1247950-1248087) | |
| 335-469, gnl|rn3|chr2 (146981320-146981449) | |
| 335-469, gnl|rn3|chr2 (146981195-146981478) | |
| 744-857, gnl|bosTau2|chr1 (75896794-75896907) | |
| 744-857, gnl|canFam2|chr23 (47692137-47692262) | |
| 744-857, gnl|dasNov1|scaffold_57468 (304-430) | |
| 744-857, gnl|echTel1|scaffold_211377 (4522-4396) | |
| 744-857, gnl|fr1|chrUn (160275458-160275582) | |
| 744-857, gnl|galGal2|chr9 (23202082-23201950) | |
| 744-857, gnl|hg17|chr3 (151121590-151121719) | |
| 744-857, gnl|Hg17|chr3 (151121611-151121724) | |
| 744-857, gnl|loxAfr1|scaffold_8954 (10600-10728) | |
| 744-857, gnl|mm7|chr3 (57949594-57949726) | |
| 744-857, gnl|Mm7|chr3 (57949618-57949731) | |
| 744-857, gnl|monDom2|scaffold_28 (21579638-21579763) | |
| 744-857, gnl|oryCun1|scaffold_130178 (714-584) | |
| 744-857, gnl|panTro1|chr2 (154225069-154225198) | |
| 744-857, gnl|rheMac2|chr2 (137848882-137848753) | |
| 744-857, gnl|rn3|chr2 (146997685-146997817) | |
| 744-857, gnl|tetNig1|chrUn_random (102395466-102395569) |
| Expressed library(ies): 25 entry(ies) | More info |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
| spl (0.572738) | |
| ton (0.351) | |
| ski (0.29347) | |
| liv (0.292569) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| cki (0.165235) | |
| mga (0.160205) | |
| eli (0.151814) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) |
| Expressed library(ies): 25 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| spl (0.572738) | |
| ton (0.351) | |
| ski (0.29347) | |
| liv (0.292569) | |
| med (0.232504) | |
| spc (0.226732) | |
| hea (0.204499) | |
| aor (0.195274) | |
| nep (0.183925) | |
| sag (0.182715) | |
| cki (0.165235) | |
| mga (0.160205) | |
| eli (0.151814) | |
| lin (0.145603) | |
| hyp (0.142837) | |
| kid (0.129735) | |
| ova (0.129132) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ese (0.126502) | |
| tra (0.123092) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| ecc (0.115035) | |
| cbl (0.114797) |