Non-Coding RNA Search

Ss1.1-Pig4-TMW8045A15.3

Sequence:


               
               AAGACAAGAACGGTCGGCGCCAGCTGACGTGCTGGTGTGTGTGGCTGGCAGTGTTCCCAG
CCTCAGAATTTCAGCCGCACGGACATCGGAGCAGGAAGTCACCGTCCCCAGTTACTTCGT
GTCCCTGTTCACTCACTCTGACTTTCTAAGTCACATTAAAGCACTGTTCATTTTTGTGGC
CTGCAGTATTTTCAGCTGATCTCAAAATAAACTGATTTTTTAAAAAAAACCCACAAAAGC
TAGGTGTCTAAAATTACAGAGTCATGTTACTCTTCTTTCCCTTTCAGAGCAACTTTTACA
CAGATGCTTTTTTTTTTTTTTTAACAGTTTTGGGTTTTTCTTTTTCTCTGGTTTTGTTTT
TATTTTCCGTGAGGAATTTGCATTCTCTCTAACCTAGCTAACTGTGGGACATAGGAAAAC
TAGGTATAAGGACCTTCGCGACCTTGATTGAGTTTGAATCCGATATTGTTCTTAAACTCA
GTGAGCCACTCTCTGCAATTTTGTACATGATATAGATATTTTGAAGGTATGGAACCTTAT
GGGAAAGAAATAGCTAATTAGTTTCCTTTTTCTCCCCCCAGAGGGGAAAGTTATGTTCTG
CAAATAGTGTGTGTCTGATTTTCCTGTTGAACAGCAATTGCTATTTATTTTTTTATTGCC
TAGAACTTCATCATGTTGTACAGGAAACGATAGCGCCACCAGTTTACCTTCCGAATCCCA
TCTGGATGTTACGACCAGACATCAGTACACGCGTCATTCCACATGTATTTAATGTGACAG
GTTTTCAGTACTGTATGTGTTCATTTCTACTTTTTTTAATATTTAAAATTGCTTTTAAAT
AAACATATTCTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACAAGAACGGTCGGCGCCAGCTGACGTGCTGGTGTGTGTGGCTGGCAGTGTTCCCAG
CCTCAGAATTTCAGCCGCACGGACATCGGAGCAGGAAGTCACCGTCCCCAGTTACTTCGT
GTCCCTGTTCACTCACTCTGACTTTCTAAGTCACATTAAAGCACTGTTCATTTTTGTGGC
CTGCAGTATTTTCAGCTGATCTCAAAATAAACTGATTTTTTAAAAAAAACCCACAAAAGC
TAGGTGTCTAAAATTACAGAGTCATGTTACTCTTCTTTCCCTTTCAGAGCAACTTTTACA
CAGATGCTTTTTTTTTTTTTTTAACAGTTTTGGGTTTTTCTTTTTCTCTGGTTTTGTTTT
TATTTTCCGTGAGGAATTTGCATTCTCTCTAACCTAGCTAACTGTGGGACATAGGAAAAC
TAGGTATAAGGACCTTCGCGACCTTGATTGAGTTTGAATCCGATATTGTTCTTAAACTCA
GTGAGCCACTCTCTGCAATTTTGTACATGATATAGATATTTTGAAGGTATGGAACCTTAT
GGGAAAGAAATAGCTAATTAGTTTCCTTTTTCTCCCCCCAGAGGGGAAAGTTATGTTCTG
CAAATAGTGTGTGTCTGATTTTCCTGTTGAACAGCAATTGCTATTTATTTTTTTATTGCC
TAGAACTTCATCATGTTGTACAGGAAACGATAGCGCCACCAGTTTACCTTCCGAATCCCA
TCTGGATGTTACGACCAGACATCAGTACACGCGTCATTCCACATGTATTTAATGTGACAG
GTTTTCAGTACTGTATGTGTTCATTTCTACTTTTTTTAATATTTAAAATTGCTTTTAAAT
AAACATATTCTC

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

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               309-424, - strand, RNAz p=0.994134
               

               
               539-657, - strand, RNAz p=0.926374
               

               
               733-852, - strand, RNAz p=0.927771

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               309-424, - strand, RNAz p=0.994134
               

               
               539-657, - strand, RNAz p=0.926374
               

               
               733-852, - strand, RNAz p=0.927771

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               20-852, gnl|bosTau2|chr14 (6118223-6119057)
               

               
               20-852, gnl|Hg17|chr8 (131134378-131133545)
               

               
               20-852, gnl|Mm7|chr15 (64163258-64162475)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               20-852, gnl|bosTau2|chr14 (6118223-6119057)
               

               
               20-852, gnl|Hg17|chr8 (131134378-131133545)
               

               
               20-852, gnl|Mm7|chr15 (64163258-64162475)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               bfe (0.149858)
               

               
               lnt (0.142308)
               

               
               ste (0.135208)
               

               
               thg (0.126791)
               

               
               spc (0.113366)

	309-424, - strand, RNAz p=0.994134
	539-657, - strand, RNAz p=0.926374
	733-852, - strand, RNAz p=0.927771

	20-852, gnl\|bosTau2\|chr14 (6118223-6119057)
	20-852, gnl\|Hg17\|chr8 (131134378-131133545)
	20-852, gnl\|Mm7\|chr15 (64163258-64162475)

	duo (0.172801)
	bfe (0.149858)
	lnt (0.142308)
	ste (0.135208)
	thg (0.126791)
	spc (0.113366)