Non-Coding RNA Search

Ss1.1-Pig4-TMW8045A22.3

Sequence:


               
               CAGGCCAGGGGATGGTCTGCAGCTGCTTGCAGACATGAAGAAAGCCGGGACGACCCCCAA
CACCCACATCTACAGCGCCCTCATCAGCGCGGCCGTCAAGAGGCTGGACTACTCCTATCT
CATCGACGTCCTCAGGGACATGAGGCGGAGCGGCGTCCCGGCGAACGAGGTGGTCATCCG
CCAGCTGGAGTTCGCGGCCCAGTACCCTCCCGCCTTTGACCGGTACAAAGGGAAAAACAC
CTACTTGGAGAAGATCGATGGCTTCCGAGCTTATTACAAGCGGTGGCTGAAAGTGATGCC
AGCAGAGGAAACCCCCCACCCGTGGCAGAAGTTTCGGACCAAACCAAAGGGAGACCAAGA
CACCGTCACTGTGGCTGATGTGCACAGAGGCCTTGGGGACAGGTGATGGGGAGACCCTGG
GGGACCTCCAGCAGAGTCGGAACAAGTGCGCGGCCTTCACGGTGCTCTGTGGGAGCCCCA
GGAGTCCCCTTTGCTTTAAAGACATGTGAAGGTACTGGTATAGCTGCAAGCATGAGGGGA
AGGTCTGGGCCAGAGTAAGAGCTGCAGCATTTGGGAGGCACTGTTCTGAGGACAGACCCT
GGGCCCAGGGTGCCCAGGTTCATGGCAAGTCCAAGAACAGCCTGGGCCACCTTGGCACAT
TATCTCAGGCCATCCACGCCTGAGAGGTGGTCACCCCCATCACTGACAAGGACAGTGAAT
TTGCTCAGGATCCCTCAGCACCTGTGAAGTGGAGTCAGGATTGAGTCCTAAGGCATCTGG
TCTCCAGGGCCTGGCCCTCTCCCCCTGGGCTCCGCACACTGCTGGCTCTGAAAGAAGCAA
TTTTTTTTTTTAAAGGTTTAAAAGTTTTTATTTCTATAAATCACCGCAGATGCACAGCAA
AGCTGTCACACAGAGACTGTGCTCCTCCTCGGGCCTGGGTAGCGCTCTGCAGGAGGAGTT
GCTCCCAGGCAACGGGTGGCGTGACAGGCAGAAACCTGCACAGTCCGCGGTCCAGCGCAG
AGAAGGGTCAGGGTCCGAGGGCTTCAGCCAGAGCAGCCCCGGCAGCCGCAGTGTGTGCAC
TCAATGATCCGGCCCACTTCCAGCTTGCTTTTGGGGACCCGGCAAATGCAGTTCGTCCCA
AAATTGGTGTCCCGTGTCTGGATGCACCGCAGGCAGCAGAGGTTCTCATATCCCTGCTTT
TTCCATTTTGCGATCAGGTTTTTGTCTGCGTAGCCTTCTTTAATACAGTACTCATACAGT
TCTCTGCTTATGGCTTTCCGCTTATAGAAGAGGTCAAAGATATAGCGGGTTTTCTGGTGG
TGGATCCTGAAGATGGGCCACAGAGATTCCACTTTCCTCTTTCCCTCGTGAGGTTCTGTT
TCAGCTTCTCTCATCTTTTGATCTAATTCATCCAGTGTTGGCTCAATCAACTCCCAGCCA
TCTGGGGGAGCTTTCCGGCTTCTTTTGACTTTAGGCATTTTTTCTCCGGAAGATAATTTG
CAAAGATCTTAGGGTCTCTTTCCCAAGATCTCTGGCCTCTTCAGTTACAGGCTTAGGTTC
TTGACCAGCTGTGACTTTGGGGTAGGTTACATTCCCTTTCTGGCACTTCCTCTTGTCAAA
ACCTCCGTCGCCGTCGGCTACCCCTTCTTTAACCAACGCCTCGGCTTCCCAGGCGACCAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCCAGGGGATGGTCTGCAGCTGCTTGCAGACATGAAGAAAGCCGGGACGACCCCCAA
CACCCACATCTACAGCGCCCTCATCAGCGCGGCCGTCAAGAGGCTGGACTACTCCTATCT
CATCGACGTCCTCAGGGACATGAGGCGGAGCGGCGTCCCGGCGAACGAGGTGGTCATCCG
CCAGCTGGAGTTCGCGGCCCAGTACCCTCCCGCCTTTGACCGGTACAAAGGGAAAAACAC
CTACTTGGAGAAGATCGATGGCTTCCGAGCTTATTACAAGCGGTGGCTGAAAGTGATGCC
AGCAGAGGAAACCCCCCACCCGTGGCAGAAGTTTCGGACCAAACCAAAGGGAGACCAAGA
CACCGTCACTGTGGCTGATGTGCACAGAGGCCTTGGGGACAGGTGATGGGGAGACCCTGG
GGGACCTCCAGCAGAGTCGGAACAAGTGCGCGGCCTTCACGGTGCTCTGTGGGAGCCCCA
GGAGTCCCCTTTGCTTTAAAGACATGTGAAGGTACTGGTATAGCTGCAAGCATGAGGGGA
AGGTCTGGGCCAGAGTAAGAGCTGCAGCATTTGGGAGGCACTGTTCTGAGGACAGACCCT
GGGCCCAGGGTGCCCAGGTTCATGGCAAGTCCAAGAACAGCCTGGGCCACCTTGGCACAT
TATCTCAGGCCATCCACGCCTGAGAGGTGGTCACCCCCATCACTGACAAGGACAGTGAAT
TTGCTCAGGATCCCTCAGCACCTGTGAAGTGGAGTCAGGATTGAGTCCTAAGGCATCTGG
TCTCCAGGGCCTGGCCCTCTCCCCCTGGGCTCCGCACACTGCTGGCTCTGAAAGAAGCAA
TTTTTTTTTTTAAAGGTTTAAAAGTTTTTATTTCTATAAATCACCGCAGATGCACAGCAA
AGCTGTCACACAGAGACTGTGCTCCTCCTCGGGCCTGGGTAGCGCTCTGCAGGAGGAGTT
GCTCCCAGGCAACGGGTGGCGTGACAGGCAGAAACCTGCACAGTCCGCGGTCCAGCGCAG
AGAAGGGTCAGGGTCCGAGGGCTTCAGCCAGAGCAGCCCCGGCAGCCGCAGTGTGTGCAC
TCAATGATCCGGCCCACTTCCAGCTTGCTTTTGGGGACCCGGCAAATGCAGTTCGTCCCA
AAATTGGTGTCCCGTGTCTGGATGCACCGCAGGCAGCAGAGGTTCTCATATCCCTGCTTT
TTCCATTTTGCGATCAGGTTTTTGTCTGCGTAGCCTTCTTTAATACAGTACTCATACAGT
TCTCTGCTTATGGCTTTCCGCTTATAGAAGAGGTCAAAGATATAGCGGGTTTTCTGGTGG
TGGATCCTGAAGATGGGCCACAGAGATTCCACTTTCCTCTTTCCCTCGTGAGGTTCTGTT
TCAGCTTCTCTCATCTTTTGATCTAATTCATCCAGTGTTGGCTCAATCAACTCCCAGCCA
TCTGGGGGAGCTTTCCGGCTTCTTTTGACTTTAGGCATTTTTTCTCCGGAAGATAATTTG
CAAAGATCTTAGGGTCTCTTTCCCAAGATCTCTGGCCTCTTCAGTTACAGGCTTAGGTTC
TTGACCAGCTGTGACTTTGGGGTAGGTTACATTCCCTTTCTGGCACTTCCTCTTGTCAAA
ACCTCCGTCGCCGTCGGCTACCCCTTCTTTAACCAACGCCTCGGCTTCCCAGGCGACCAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|51094629|gb|EAL23881.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|51094629|gb|EAL23881.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               660-777, - strand, RNAz p=0.778977

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               660-777, - strand, RNAz p=0.778977

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               223-1095, gnl|bosTau2|chr25 (34821660-34822496)
               

               
               223-1095, gnl|Hg17|chr7 (98662424-98661664)
               


               
               1262-1386, gnl|bosTau2|chr25 (34824284-34824408)
               

               
               1262-1386, gnl|Hg17|chr7 (98658534-98658410)
               

               
               1262-1386, gnl|Mm7|chr5 (144173661-144173537)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               223-1095, gnl|bosTau2|chr25 (34821660-34822496)
               

               
               223-1095, gnl|Hg17|chr7 (98662424-98661664)
               


               
               1262-1386, gnl|bosTau2|chr25 (34824284-34824408)
               

               
               1262-1386, gnl|Hg17|chr7 (98658534-98658410)
               

               
               1262-1386, gnl|Mm7|chr5 (144173661-144173537)

Expressed library(ies): 42 entry(ies)

More info

Expressed library(ies): 42 entry(ies)

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               fce (0.543183)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               nbm (0.297974)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 42 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.543183)
               

               
               fty (0.351679)
               

               
               med (0.348756)
               

               
               nbm (0.297974)
               

               
               cov (0.264306)
               

               
               eep (0.245128)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               nlu (0.191681)
               

               
               ill (0.175593)
               

               
               sin (0.174948)
               

               
               duo (0.172801)
               

               
               eye (0.170503)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               csp (0.161186)
               

               
               cli (0.152812)
               

               
               cag (0.151194)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pty (0.142714)
               

               
               cst (0.140036)
               

               
               hlv (0.139256)
               

               
               che (0.136314)
               

               
               ssp (0.13552)
               

               
               pla (0.133672)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               ebs (0.118301)
               

               
               jca (0.11396)
               

               
               spc (0.113366)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	223-1095, gnl\|bosTau2\|chr25 (34821660-34822496)
	223-1095, gnl\|Hg17\|chr7 (98662424-98661664)

	1262-1386, gnl\|bosTau2\|chr25 (34824284-34824408)
	1262-1386, gnl\|Hg17\|chr7 (98658534-98658410)
	1262-1386, gnl\|Mm7\|chr5 (144173661-144173537)

	fce (0.543183)
	fty (0.351679)
	med (0.348756)
	nbm (0.297974)
	cov (0.264306)
	eep (0.245128)
	ecc (0.23007)
	fcc (0.197785)
	col (0.195008)
	nlu (0.191681)
	ill (0.175593)
	sin (0.174948)
	duo (0.172801)
	eye (0.170503)
	fhi (0.169578)
	cje (0.165235)
	csp (0.161186)
	cli (0.152812)
	cag (0.151194)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	spl (0.143184)
	hyp (0.142837)
	pty (0.142714)
	cst (0.140036)
	hlv (0.139256)
	che (0.136314)
	ssp (0.13552)
	pla (0.133672)
	lyg (0.133103)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	ebs (0.118301)
	jca (0.11396)
	spc (0.113366)
	cty (0.10408)
	jej (0.0989218)
	eje (0.0988338)
	ldo (0.0970026)