Ss1.1-Pig4-TMW8045B05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCATCCTTGGAGCAGCCGTGGCCCTTCCGGGCCCACCTGGCCCTCCAGGACAGCCAGGGC TTCCCGGATCCAGAAACCTGGTGACAGCATTTAGCAACATGGATGACATGTTGCAGAAAG CGCATTTGGTCATAGAAGGGACATTCATCTACCTGAGGGACAGCACCGAGTTTTTCATTC GTGTCAGAGATGGTTGGAAAAAACTACAGCTGGGAGAACTGATCCCTCTTCCGGCCGACA GCCTTCCACCGCCCGCACTTTCCGGCAATCCTCACCAGCCTCAGCTTCCGCTGACATCCA TTTCAAGTGTCAATTACGACAGGCCTGCACTACACTTGGTGGCTCTGAACACACCGTCTT CTGGGGACCTTCGTGCTGATTTTCAGTGCTTCCAGCAGGCCAGGGCTGCAGGACTATTGT CCACCTACCGAGCCTTCTTATCCTCTCATTTGCAAGATCTCTCCACAGTTGTGAGGAAAG CGGAGAGATACAGCCTTCCCATAGTGAACCTCAAGGGTCAAGTACTTTTTAATAATTGGG ACTCCATTTTTTCTGGCCATGGAGGTCAGTTCAATACACATGTTCCAATATATTCCTTTG ATGGCCGAGACGTAATGACAGATCCTTCTTGGCCCCAGAAAGTCGTTTGGCATGGCTCCA GCACCCACGGAGTCCGTCTTGTGGATCAGTACTGTGAAGCCTGGCGGACGGCAGACGTGG CGGTCATGGGCTTGGCTTCCCCGCTGAGCACGGGGAAGATTCTGGACCAGAAAGCATACA GCTGCGCTGATAGGCTAATTGTTCTGTGTATCGAAAACAGTTTCATGACAGACGCGAGGA AGTAACGACCTTCGCATGATTCCTAAGAGTTTTCCGATCTTGCTTATGTGAAGAGTTGAC ACTGAAATCTAAAATGTTTAAATGTTGTAAATATTAGGGTTTTTTTTTTTACACATTCGT CACGACAGCAACCAAAGAAAACATACCTCAGTATACTCAAAACTGAAGACATAAAGGACT CAGACGAAAGATAAAATCTTATCCATCTCTTGGTGCTAGATTCTGCAGGAAACCCCATGC AGTATGAACACATCCCAACATGGTTAAGAGCAAGTTGAAAACAAAGGCCTTGGCTTTTTG CCCACTGCATCTTCAGAAAGTGATTGCCTCTTTTTAACCGTTGTTGAGTGTAAGATGTCC TTCATGTTTTCTTACAAAGTCAGTGTTTAGAAATGTTACCCCTTTCTAAGTTATGTACAG ACGGAGTGCTTTATTCTTTAATATACATCCATTGTTTGCAACTTCTATTCATAAAGAGAA ACAGAACTGCTCAAAATGATCCTATTTGTATTTTCTGGTATTACCAGACATTCAACTTTT TTCCCTAAAATATCATTGCCATCATGCCTTAGGAGTTTTATATTTTTACACAATTATATT TTAGTATGGCATTGTTTATATAACTGACTTGCTGGAAAAGTTTAAACGCCAAATGATCTG AAACTAGAAAAGAAATAACACAAAATTTCTACCTTTCCTTTGGCAGTCCTTTTCCCCTCC CCCAAGCCCTGATTTTATGACTCCCTTTTGGCAATTCTTGAATTATAACTGCGATTGAAC AAACAAGTTCTGAGAATGAATTTTCTGAGATGCATACATCTTCCTGCTGTATACTTTGAT TCTTTATTTTTTTCCCCCTGTAAGTGGTCATAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCATCCTTGGAGCAGCCGTGGCCCTTCCGGGCCCACCTGGCCCTCCAGGACAGCCAGGGC TTCCCGGATCCAGAAACCTGGTGACAGCATTTAGCAACATGGATGACATGTTGCAGAAAG CGCATTTGGTCATAGAAGGGACATTCATCTACCTGAGGGACAGCACCGAGTTTTTCATTC GTGTCAGAGATGGTTGGAAAAAACTACAGCTGGGAGAACTGATCCCTCTTCCGGCCGACA GCCTTCCACCGCCCGCACTTTCCGGCAATCCTCACCAGCCTCAGCTTCCGCTGACATCCA TTTCAAGTGTCAATTACGACAGGCCTGCACTACACTTGGTGGCTCTGAACACACCGTCTT CTGGGGACCTTCGTGCTGATTTTCAGTGCTTCCAGCAGGCCAGGGCTGCAGGACTATTGT CCACCTACCGAGCCTTCTTATCCTCTCATTTGCAAGATCTCTCCACAGTTGTGAGGAAAG CGGAGAGATACAGCCTTCCCATAGTGAACCTCAAGGGTCAAGTACTTTTTAATAATTGGG ACTCCATTTTTTCTGGCCATGGAGGTCAGTTCAATACACATGTTCCAATATATTCCTTTG ATGGCCGAGACGTAATGACAGATCCTTCTTGGCCCCAGAAAGTCGTTTGGCATGGCTCCA GCACCCACGGAGTCCGTCTTGTGGATCAGTACTGTGAAGCCTGGCGGACGGCAGACGTGG CGGTCATGGGCTTGGCTTCCCCGCTGAGCACGGGGAAGATTCTGGACCAGAAAGCATACA GCTGCGCTGATAGGCTAATTGTTCTGTGTATCGAAAACAGTTTCATGACAGACGCGAGGA AGTAACGACCTTCGCATGATTCCTAAGAGTTTTCCGATCTTGCTTATGTGAAGAGTTGAC ACTGAAATCTAAAATGTTTAAATGTTGTAAATATTAGGGTTTTTTTTTTTACACATTCGT CACGACAGCAACCAAAGAAAACATACCTCAGTATACTCAAAACTGAAGACATAAAGGACT CAGACGAAAGATAAAATCTTATCCATCTCTTGGTGCTAGATTCTGCAGGAAACCCCATGC AGTATGAACACATCCCAACATGGTTAAGAGCAAGTTGAAAACAAAGGCCTTGGCTTTTTG CCCACTGCATCTTCAGAAAGTGATTGCCTCTTTTTAACCGTTGTTGAGTGTAAGATGTCC TTCATGTTTTCTTACAAAGTCAGTGTTTAGAAATGTTACCCCTTTCTAAGTTATGTACAG ACGGAGTGCTTTATTCTTTAATATACATCCATTGTTTGCAACTTCTATTCATAAAGAGAA ACAGAACTGCTCAAAATGATCCTATTTGTATTTTCTGGTATTACCAGACATTCAACTTTT TTCCCTAAAATATCATTGCCATCATGCCTTAGGAGTTTTATATTTTTACACAATTATATT TTAGTATGGCATTGTTTATATAACTGACTTGCTGGAAAAGTTTAAACGCCAAATGATCTG AAACTAGAAAAGAAATAACACAAAATTTCTACCTTTCCTTTGGCAGTCCTTTTCCCCTCC CCCAAGCCCTGATTTTATGACTCCCTTTTGGCAATTCTTGAATTATAACTGCGATTGAAC AAACAAGTTCTGAGAATGAATTTTCTGAGATGCATACATCTTCCTGCTGTATACTTTGAT TCTTTATTTTTTTCCCCCTGTAAGTGGTCATAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | More info |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
| 80-209, gnl|bosTau2|chr8 (34897298-34897169) | |
| 80-209, gnl|canFam2|chr11 (59153024-59153274) | |
| 80-209, gnl|danRer3|chr2 (15755238-15755032) | |
| 80-209, gnl|dasNov1|scaffold_1993 (13838-14125) | |
| 80-209, gnl|echTel1|scaffold_315194 (42438-42664) | |
| 80-209, gnl|galGal2|chr2 (55758838-55759103) | |
| 80-209, gnl|hg17|chr9 (98903790-98904039) | |
| 80-209, gnl|Hg17|chr9 (98903807-98903936) | |
| 80-209, gnl|loxAfr1|scaffold_18223 (28207-27982) | |
| 80-209, gnl|mm7|chr4 (47320509-47320748) | |
| 80-209, gnl|Mm7|chr4 (47320526-47320655) | |
| 80-209, gnl|monDom2|scaffold_80 (3468541-3468315) | |
| 80-209, gnl|oryCun1|scaffold_201075 (252456-252685) | |
| 80-209, gnl|panTro1|chr11 (83128238-83128487) | |
| 80-209, gnl|rheMac2|chr15 (37167708-37167473) | |
| 80-209, gnl|rn3|chr5 (63924942-63925182) | |
| 330-516, gnl|bosTau2|chr8 (34893750-34893564) | |
| 330-516, gnl|canFam2|chr11 (59158039-59158281) | |
| 330-516, gnl|danRer3|chr2 (15751885-15751654) | |
| 330-516, gnl|dasNov1|scaffold_1993 (17265-17514) | |
| 330-516, gnl|echTel1|scaffold_315194 (45545-45791) | |
| 330-516, gnl|fr1|chrUn (149926255-149926508) | |
| 330-516, gnl|galGal2|chr2 (55761405-55761653) | |
| 330-516, gnl|hg17|chr9 (98908700-98908945) | |
| 330-516, gnl|Hg17|chr9 (98908719-98908905) | |
| 330-516, gnl|loxAfr1|scaffold_2303 (11461-11216) | |
| 330-516, gnl|mm7|chr4 (47324218-47324459) | |
| 330-516, gnl|Mm7|chr4 (47324234-47324420) | |
| 330-516, gnl|monDom2|scaffold_80 (3464491-3464249) | |
| 330-516, gnl|panTro1|chr11 (83133148-83133393) | |
| 330-516, gnl|rheMac2|chr15 (37162682-37162437) | |
| 330-516, gnl|rn3|chr5 (63928932-63929162) | |
| 330-516, gnl|tetNig1|chrUn_random (16114525-16114735) | |
| 626-1716, gnl|bosTau2|chr8 (34890854-34889757) | |
| 626-1716, gnl|Hg17|chr9 (98911504-98912600) | |
| 626-1716, gnl|Mm7|chr4 (47325885-47326966) |
| Aligned organism(s): 36 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 80-209, gnl|bosTau2|chr8 (34897298-34897169) | |
| 80-209, gnl|canFam2|chr11 (59153024-59153274) | |
| 80-209, gnl|danRer3|chr2 (15755238-15755032) | |
| 80-209, gnl|dasNov1|scaffold_1993 (13838-14125) | |
| 80-209, gnl|echTel1|scaffold_315194 (42438-42664) | |
| 80-209, gnl|galGal2|chr2 (55758838-55759103) | |
| 80-209, gnl|hg17|chr9 (98903790-98904039) | |
| 80-209, gnl|Hg17|chr9 (98903807-98903936) | |
| 80-209, gnl|loxAfr1|scaffold_18223 (28207-27982) | |
| 80-209, gnl|mm7|chr4 (47320509-47320748) | |
| 80-209, gnl|Mm7|chr4 (47320526-47320655) | |
| 80-209, gnl|monDom2|scaffold_80 (3468541-3468315) | |
| 80-209, gnl|oryCun1|scaffold_201075 (252456-252685) | |
| 80-209, gnl|panTro1|chr11 (83128238-83128487) | |
| 80-209, gnl|rheMac2|chr15 (37167708-37167473) | |
| 80-209, gnl|rn3|chr5 (63924942-63925182) | |
| 330-516, gnl|bosTau2|chr8 (34893750-34893564) | |
| 330-516, gnl|canFam2|chr11 (59158039-59158281) | |
| 330-516, gnl|danRer3|chr2 (15751885-15751654) | |
| 330-516, gnl|dasNov1|scaffold_1993 (17265-17514) | |
| 330-516, gnl|echTel1|scaffold_315194 (45545-45791) | |
| 330-516, gnl|fr1|chrUn (149926255-149926508) | |
| 330-516, gnl|galGal2|chr2 (55761405-55761653) | |
| 330-516, gnl|hg17|chr9 (98908700-98908945) | |
| 330-516, gnl|Hg17|chr9 (98908719-98908905) | |
| 330-516, gnl|loxAfr1|scaffold_2303 (11461-11216) | |
| 330-516, gnl|mm7|chr4 (47324218-47324459) | |
| 330-516, gnl|Mm7|chr4 (47324234-47324420) | |
| 330-516, gnl|monDom2|scaffold_80 (3464491-3464249) | |
| 330-516, gnl|panTro1|chr11 (83133148-83133393) | |
| 330-516, gnl|rheMac2|chr15 (37162682-37162437) | |
| 330-516, gnl|rn3|chr5 (63928932-63929162) | |
| 330-516, gnl|tetNig1|chrUn_random (16114525-16114735) | |
| 626-1716, gnl|bosTau2|chr8 (34890854-34889757) | |
| 626-1716, gnl|Hg17|chr9 (98911504-98912600) | |
| 626-1716, gnl|Mm7|chr4 (47325885-47326966) |
| Expressed library(ies): 39 entry(ies) | More info |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
| gul (2.48624) | |
| fat (1.91656) | |
| sug (0.891039) | |
| bfe (0.749288) | |
| bla (0.621736) | |
| ski (0.586941) | |
| aor (0.585823) | |
| mga (0.480615) | |
| lin (0.436808) | |
| cov (0.396458) | |
| elu (0.385356) | |
| tra (0.369276) | |
| nep (0.36785) | |
| jca (0.34188) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| liv (0.292569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| eru (0.240096) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| eep (0.122564) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |
| Expressed library(ies): 39 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| gul (2.48624) | |
| fat (1.91656) | |
| sug (0.891039) | |
| bfe (0.749288) | |
| bla (0.621736) | |
| ski (0.586941) | |
| aor (0.585823) | |
| mga (0.480615) | |
| lin (0.436808) | |
| cov (0.396458) | |
| elu (0.385356) | |
| tra (0.369276) | |
| nep (0.36785) | |
| jca (0.34188) | |
| tbr (0.308356) | |
| sme (0.305437) | |
| liv (0.292569) | |
| kid (0.259471) | |
| ova (0.258264) | |
| eru (0.240096) | |
| nms (0.213858) | |
| mas (0.210305) | |
| tes (0.207814) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| mgm (0.180343) | |
| fbs (0.175346) | |
| sin (0.174948) | |
| cut (0.169924) | |
| nje (0.16592) | |
| isp (0.150376) | |
| spl (0.143184) | |
| ssp (0.13552) | |
| nmm (0.132802) | |
| ret (0.128733) | |
| eep (0.122564) | |
| spc (0.113366) | |
| cty (0.10408) | |
| eje (0.0988338) |