Ss1.1-Pig4-TMW8045B16.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CATCTCCTCTAAAGTGCCCAAAGCTGAGTACCTCCCCACCATCATCCGCAGAGACGACCC TTCCATCATCCCCATCCTCTACGACCACGAGCACGCAACATTCGAGGACATTCTGGAGGA GATAGAGAAGAAGCTGAACGTCTACCACAAGGGGGCCAAGATCTGGAAGCTGCTGATTTT CTGCCAGGGCGGCCCGGGACACCTGTACCTGCTCAAGAATAAGGTGGCCACCTTTGCCAA AGTGGAGAAGGAGGAGGACATGATCCACTTCTGGAAGCGGTTGAGCCGCTTGATGAGCAA AGTAAACCCAGAGCCGAACGTCATCCATGTGATGGGCTGCTACATTCTGGGGAACCCCAA CGGGGAGAAGCTGTTCCAGAACCTCAGGAGCCTCATGACCCCTTACAGGGTCACCTTCGA GTCCCCCCTGGAGCTGTCGGCCCAAGGGAAGCAGATGATTGAAACCTACTTTGACTTCCG ACTGTACCGCCTGTGGAAGAGCCGCCAGCACTCGAAGCTGCTGGACTTTGAGGACGTTCT GTGAAGGGCGGGGCCGCTGCCTTGGACCGGCGACTGGGGCTCGGCTGCCGTGTGCGCCCA GTTCCATGTGGGTCCTGGTCTTCATGGCCACTTCAGGGCACCCTCCGACGCCGCTCAGGT TCCCTCCCAGGGGTCTGGTCCTCAACACAGCCCGGGTCACCGAGGCCACAGCCCCTGCGC CTGGGAGGAGCCTCATCCGTCACGGCCACCACGGCCGTGGAAGTTGGCCGGGCCTCGGCC TCGCCTGGAGGCTGCAGCACGGGGCGGCTCCTCTGTAGGTTCATAGAAATAAGTGCAATT TTCTACACGCCCGAGACAATTCCAAGGGAAGCAGCATGACTAGTGAACTAGTTAAGGGCT GCATTACTAGTTACGGCGTAGATCTCCCGGCTCAGCTCTGTGCCCCAGCTCCCCAGCCCT GCCGTATCTGATCACCAGCACCAGGGCGGCCCGTCTGCCCGGCTGGCTCCGTCGCTGGCC GAGTCCCTGATCGTCCGTGCTTGCGCTGCTCTCGCCGCCCCTGCTTCCCTGGCCTCAGGC GCACCGGCTCAGCACGGTGCCTGGGCAGCCACAGAGTGGGAGCGAGCCTTCCTTTGCTCA GAGGGCCACTGGGTCGAGTCAGGCCCTGCCTGCTCCCCAGCCTCCCGGGCCTGCCCGGCT CCCCACAGCTGTCCAGCTCAGCTTTTGGCGGCCGAGGTCCGAAGGCCTCTCCCAGCGCAA AGCCTGGGGTCTTGGTGGGAGCCTGCTGGGGCTGGGTCCCGGTGGCGAGAACCCTGCAGC ACACTGCAGTGGGGGCCCGGGCCTGAAGGCTGGGCGGCTGGTGGGCTATGGGCTCACAGC CTTGCTGTGGCCTGGCGGGGGGCTCTCTTGTACATAGCTGGGGCTCGGGGGCTGGCCCCC CTTTGCAGAGCCTGGTGCCAGACACCCGGCTGTGCCCCTGGCCGAGGGGGCGGGGCTTGA GCCGGGCTCTGCACCACGTACGGCATCCCTTAGAGTGACCATTAAATCTGACCCTCCGCT GCGAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CATCTCCTCTAAAGTGCCCAAAGCTGAGTACCTCCCCACCATCATCCGCAGAGACGACCC TTCCATCATCCCCATCCTCTACGACCACGAGCACGCAACATTCGAGGACATTCTGGAGGA GATAGAGAAGAAGCTGAACGTCTACCACAAGGGGGCCAAGATCTGGAAGCTGCTGATTTT CTGCCAGGGCGGCCCGGGACACCTGTACCTGCTCAAGAATAAGGTGGCCACCTTTGCCAA AGTGGAGAAGGAGGAGGACATGATCCACTTCTGGAAGCGGTTGAGCCGCTTGATGAGCAA AGTAAACCCAGAGCCGAACGTCATCCATGTGATGGGCTGCTACATTCTGGGGAACCCCAA CGGGGAGAAGCTGTTCCAGAACCTCAGGAGCCTCATGACCCCTTACAGGGTCACCTTCGA GTCCCCCCTGGAGCTGTCGGCCCAAGGGAAGCAGATGATTGAAACCTACTTTGACTTCCG ACTGTACCGCCTGTGGAAGAGCCGCCAGCACTCGAAGCTGCTGGACTTTGAGGACGTTCT GTGAAGGGCGGGGCCGCTGCCTTGGACCGGCGACTGGGGCTCGGCTGCCGTGTGCGCCCA GTTCCATGTGGGTCCTGGTCTTCATGGCCACTTCAGGGCACCCTCCGACGCCGCTCAGGT TCCCTCCCAGGGGTCTGGTCCTCAACACAGCCCGGGTCACCGAGGCCACAGCCCCTGCGC CTGGGAGGAGCCTCATCCGTCACGGCCACCACGGCCGTGGAAGTTGGCCGGGCCTCGGCC TCGCCTGGAGGCTGCAGCACGGGGCGGCTCCTCTGTAGGTTCATAGAAATAAGTGCAATT TTCTACACGCCCGAGACAATTCCAAGGGAAGCAGCATGACTAGTGAACTAGTTAAGGGCT GCATTACTAGTTACGGCGTAGATCTCCCGGCTCAGCTCTGTGCCCCAGCTCCCCAGCCCT GCCGTATCTGATCACCAGCACCAGGGCGGCCCGTCTGCCCGGCTGGCTCCGTCGCTGGCC GAGTCCCTGATCGTCCGTGCTTGCGCTGCTCTCGCCGCCCCTGCTTCCCTGGCCTCAGGC GCACCGGCTCAGCACGGTGCCTGGGCAGCCACAGAGTGGGAGCGAGCCTTCCTTTGCTCA GAGGGCCACTGGGTCGAGTCAGGCCCTGCCTGCTCCCCAGCCTCCCGGGCCTGCCCGGCT CCCCACAGCTGTCCAGCTCAGCTTTTGGCGGCCGAGGTCCGAAGGCCTCTCCCAGCGCAA AGCCTGGGGTCTTGGTGGGAGCCTGCTGGGGCTGGGTCCCGGTGGCGAGAACCCTGCAGC ACACTGCAGTGGGGGCCCGGGCCTGAAGGCTGGGCGGCTGGTGGGCTATGGGCTCACAGC CTTGCTGTGGCCTGGCGGGGGGCTCTCTTGTACATAGCTGGGGCTCGGGGGCTGGCCCCC CTTTGCAGAGCCTGGTGCCAGACACCCGGCTGTGCCCCTGGCCGAGGGGGCGGGGCTTGA GCCGGGCTCTGCACCACGTACGGCATCCCTTAGAGTGACCATTAAATCTGACCCTCCGCT GCGAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | More info |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
| 558-649, - strand, RNAz p=0.969219 | |
| 863-1282, - strand, RNAz p=0.866984 | |
| 1094-1344, - strand, RNAz p=0.996628 | |
| 1369-1553, - strand, RNAz p=0.995588 | |
| 1450-1563, - strand, RNAz p=0.799725 |
| Predicted RNA structure(s): 5 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 558-649, - strand, RNAz p=0.969219 | |
| 863-1282, - strand, RNAz p=0.866984 | |
| 1094-1344, - strand, RNAz p=0.996628 | |
| 1369-1553, - strand, RNAz p=0.995588 | |
| 1450-1563, - strand, RNAz p=0.799725 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 268-370, gnl|bosTau2|chr11 (85256869-85256971) | |
| 268-370, gnl|canFam2|chr9 (51620128-51620020) | |
| 268-370, gnl|danRer3|chr16 (29123470-29123362) | |
| 268-370, gnl|echTel1|scaffold_298077 (5606-5714) | |
| 268-370, gnl|fr1|chrUn (316793386-316793279) | |
| 268-370, gnl|hg17|chr9 (137620210-137620318) | |
| 268-370, gnl|Hg17|chr9 (137620314-137620212) | |
| 268-370, gnl|mm7|chr2 (25068679-25068571) | |
| 268-370, gnl|Mm7|chr2 (25068573-25068675) | |
| 268-370, gnl|monDom2|scaffold_310 (86162-86060) | |
| 268-370, gnl|rheMac2|chr15 (787121-787013) | |
| 268-370, gnl|rn3|chr3 (5208463-5208355) | |
| 268-370, gnl|tetNig1|chrUn_random (92203742-92203635) | |
| 268-370, gnl|xenTro1|scaffold_302 (1102391-1102499) | |
| 440-1563, gnl|bosTau2|chr11 (85257483-85258621) | |
| 440-1563, gnl|canFam2|chr9 (51621630-51620911) | |
| 440-1563, gnl|echTel1|scaffold_298077 (4418-4888) | |
| 440-1563, gnl|hg17|chr9 (137618475-137619316) | |
| 440-1563, gnl|Hg17|chr9 (137619787-137618514) | |
| 440-1563, gnl|mm7|chr2 (25070227-25069454) | |
| 440-1563, gnl|Mm7|chr2 (25068977-25070192) | |
| 440-1563, gnl|monDom2|scaffold_310 (87800-87078) | |
| 440-1563, gnl|panTro1|chr11_random (47954119-47954960) | |
| 440-1563, gnl|rheMac2|chr15 (788849-788020) | |
| 440-1563, gnl|rn3|chr3 (5210290-5209534) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 268-370, gnl|bosTau2|chr11 (85256869-85256971) | |
| 268-370, gnl|canFam2|chr9 (51620128-51620020) | |
| 268-370, gnl|danRer3|chr16 (29123470-29123362) | |
| 268-370, gnl|echTel1|scaffold_298077 (5606-5714) | |
| 268-370, gnl|fr1|chrUn (316793386-316793279) | |
| 268-370, gnl|hg17|chr9 (137620210-137620318) | |
| 268-370, gnl|Hg17|chr9 (137620314-137620212) | |
| 268-370, gnl|mm7|chr2 (25068679-25068571) | |
| 268-370, gnl|Mm7|chr2 (25068573-25068675) | |
| 268-370, gnl|monDom2|scaffold_310 (86162-86060) | |
| 268-370, gnl|rheMac2|chr15 (787121-787013) | |
| 268-370, gnl|rn3|chr3 (5208463-5208355) | |
| 268-370, gnl|tetNig1|chrUn_random (92203742-92203635) | |
| 268-370, gnl|xenTro1|scaffold_302 (1102391-1102499) | |
| 440-1563, gnl|bosTau2|chr11 (85257483-85258621) | |
| 440-1563, gnl|canFam2|chr9 (51621630-51620911) | |
| 440-1563, gnl|echTel1|scaffold_298077 (4418-4888) | |
| 440-1563, gnl|hg17|chr9 (137618475-137619316) | |
| 440-1563, gnl|Hg17|chr9 (137619787-137618514) | |
| 440-1563, gnl|mm7|chr2 (25070227-25069454) | |
| 440-1563, gnl|Mm7|chr2 (25068977-25070192) | |
| 440-1563, gnl|monDom2|scaffold_310 (87800-87078) | |
| 440-1563, gnl|panTro1|chr11_random (47954119-47954960) | |
| 440-1563, gnl|rheMac2|chr15 (788849-788020) | |
| 440-1563, gnl|rn3|chr3 (5210290-5209534) |
| Expressed library(ies): 9 entry(ies) | More info |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
| pla (0.401016) | |
| fce (0.271592) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| jca (0.11396) |
| Expressed library(ies): 9 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| pla (0.401016) | |
| fce (0.271592) | |
| eep (0.245128) | |
| ebs (0.236602) | |
| ece (0.229305) | |
| cty (0.20816) | |
| nlu (0.191681) | |
| nco (0.161734) | |
| jca (0.11396) |