Non-Coding RNA Search

Ss1.1-Pig4-TMW8045B18.5

Sequence:


               
               AAAAAAAATCTTCTCAGATTTTGTTTACATATTTTACTACATTTTTGCTGGTATAATTCC
TTAGCCACCTGTGTACATACTGCTTTGAGAACTGTTCTTTCCTTTCTGTTTGTTTGCTTC
GGTTTGTTTGGTTTATGTTCCAGTTGTCTTTTTTGAAAAGAGGAAACAATGTACAGAAAA
ACAATAAACTGGTTGTGTGGCCATAGCTATCCCAAAAGCAAGAGACAAAGCGAGACAAAT
ATTCACACAAAAATGAAATGTGTCCTTTGGAGGGTCAGATATATACAATTTCTTTTGTAC
AGATGAAAATCAATCAGCTGTTTAGATTTAGAAATACACTCTTGCTGGTCTTTGTAAGTT
GCATGAATATTTGACTTTGAAAAAATAAAGACGTGGGGCAAAAAGCGCAATCTAAACAAT
GGTAGTCTTTACTAATGTACATGGAAAGAGGTGTTCCTCATTATCTGATATTTCAATGTG
TTAAGAGTTTTGGATTTTTTTGTTGTCCTTGAAAAAGACAGGATGATAAAGAGATATCAA
AGCACGATTTTAGATAACCTAAATGGCCCAACCTATATGAAGTTGATTATATCTCGATGT
CTGTAAGAGATTGCTGTTCTTGGAGTCTTGAGGTCTTGTGAACTGATTTCCTGCTTTCTT
TCTTTACATTTTCTATTTGAGCAAACATCCATTTGTTATATTCCTTTTAGTGTAAGTTTC
TATTTGGACAATTTTATGGGAACATGTGCATTCTGTATGTGAGCTTTTATCATATTCCTG
TTGTTTTATGAGCAGACTCTTAAGGAATTTATTTTATGACGTTGTGAAGTTACTGCTTTT
TCTTTTTCCTTTTCTCTTTTGTTTCATATTTGCATTTTCGTTCGAGGATATGCTTAGCAA
TAAAATGTTCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAATCTTCTCAGATTTTGTTTACATATTTTACTACATTTTTGCTGGTATAATTCC
TTAGCCACCTGTGTACATACTGCTTTGAGAACTGTTCTTTCCTTTCTGTTTGTTTGCTTC
GGTTTGTTTGGTTTATGTTCCAGTTGTCTTTTTTGAAAAGAGGAAACAATGTACAGAAAA
ACAATAAACTGGTTGTGTGGCCATAGCTATCCCAAAAGCAAGAGACAAAGCGAGACAAAT
ATTCACACAAAAATGAAATGTGTCCTTTGGAGGGTCAGATATATACAATTTCTTTTGTAC
AGATGAAAATCAATCAGCTGTTTAGATTTAGAAATACACTCTTGCTGGTCTTTGTAAGTT
GCATGAATATTTGACTTTGAAAAAATAAAGACGTGGGGCAAAAAGCGCAATCTAAACAAT
GGTAGTCTTTACTAATGTACATGGAAAGAGGTGTTCCTCATTATCTGATATTTCAATGTG
TTAAGAGTTTTGGATTTTTTTGTTGTCCTTGAAAAAGACAGGATGATAAAGAGATATCAA
AGCACGATTTTAGATAACCTAAATGGCCCAACCTATATGAAGTTGATTATATCTCGATGT
CTGTAAGAGATTGCTGTTCTTGGAGTCTTGAGGTCTTGTGAACTGATTTCCTGCTTTCTT
TCTTTACATTTTCTATTTGAGCAAACATCCATTTGTTATATTCCTTTTAGTGTAAGTTTC
TATTTGGACAATTTTATGGGAACATGTGCATTCTGTATGTGAGCTTTTATCATATTCCTG
TTGTTTTATGAGCAGACTCTTAAGGAATTTATTTTATGACGTTGTGAAGTTACTGCTTTT
TCTTTTTCCTTTTCTCTTTTGTTTCATATTTGCATTTTCGTTCGAGGATATGCTTAGCAA
TAAAATGTTCTT

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               1-912, gnl|bosTau2|chr10 (63800519-63801431)
               

               
               1-912, gnl|Hg17|chr14 (79399620-79400508)
               

               
               1-912, gnl|Mm7|chr12 (87814211-87815161)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-912, gnl|bosTau2|chr10 (63800519-63801431)
               

               
               1-912, gnl|Hg17|chr14 (79399620-79400508)
               

               
               1-912, gnl|Mm7|chr12 (87814211-87815161)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

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               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ret (0.128733)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fco (0.314416)
               

               
               cbe (0.239234)
               

               
               ret (0.128733)

	1-912, gnl\|bosTau2\|chr10 (63800519-63801431)
	1-912, gnl\|Hg17\|chr14 (79399620-79400508)
	1-912, gnl\|Mm7\|chr12 (87814211-87815161)