Ss1.1-Pig4-TMW8045B20.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCCCCTGCTCCGTGGCTGGCTCCATTTCGGCTGGTGCCTCGGGCGGGACCACTCGGGCG GGACCAGAAGACATGGGCACTACCTGGCGGAATCCTGGCTGGGTGCGGTTCGCGCTTTGC CTCGCGGGCTTAGTGCTGTCTCTCTACGCTCTGCACGTGAAGGCGGCGCGCGCCCGGGAC CGGAATTACCGCGCTCTCTGCGACGTGGGCACCGCCATCAGTTGTTCCCGCGTCTTCTCC TCCAGGTGGGGCCAGGGCTTCGGACTGGTGGAGCAGGTGCTGGGCAAGGACAGCGTCCTC AATCAATCCAACAGCATATTTGGCTGCATCTTCTACACACTACAGCTGTTGTTAGGTTGC CTACGGGGCCGCTGGGCATCTGTCCTGCTGGTGCTGAGTTCCCTGGTGTCTCTAGCTGGT TCTGTCTACCTGGCCTGGATCCTCTTCTTCGTGCTTTATGATTTCTGCATCGTTTGCCTC ACCACCTACGCCATCAACCTGGGCCTGATGGTGCTCAGTTTCCGGGAGATGCAGGGACCC CAGAGCAAGGTCAAGGAGCACTGAGCCCTCACCCCAAGCCAGGCCGACTTTATCTGCTCT CCTTTGGCATATGACCCTTGCCCAAGGGGACTACATCCGGATCCTTAGAAGTGTCTGCAA CTTGCCTCCTCCATCCTCCCTCACAGGACGATGGACCAACCATGCCGCACTGTCTCCTCC ACCTTAGTGTCTCTGGCTCTGTCCCCAAGGGCTGGTTCCCAAAGCTCCTGCTATTGCTCA AGGAGGGAAGGTTCAGAGCAATAAAATTTCTTAAATAAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCCCCTGCTCCGTGGCTGGCTCCATTTCGGCTGGTGCCTCGGGCGGGACCACTCGGGCG GGACCAGAAGACATGGGCACTACCTGGCGGAATCCTGGCTGGGTGCGGTTCGCGCTTTGC CTCGCGGGCTTAGTGCTGTCTCTCTACGCTCTGCACGTGAAGGCGGCGCGCGCCCGGGAC CGGAATTACCGCGCTCTCTGCGACGTGGGCACCGCCATCAGTTGTTCCCGCGTCTTCTCC TCCAGGTGGGGCCAGGGCTTCGGACTGGTGGAGCAGGTGCTGGGCAAGGACAGCGTCCTC AATCAATCCAACAGCATATTTGGCTGCATCTTCTACACACTACAGCTGTTGTTAGGTTGC CTACGGGGCCGCTGGGCATCTGTCCTGCTGGTGCTGAGTTCCCTGGTGTCTCTAGCTGGT TCTGTCTACCTGGCCTGGATCCTCTTCTTCGTGCTTTATGATTTCTGCATCGTTTGCCTC ACCACCTACGCCATCAACCTGGGCCTGATGGTGCTCAGTTTCCGGGAGATGCAGGGACCC CAGAGCAAGGTCAAGGAGCACTGAGCCCTCACCCCAAGCCAGGCCGACTTTATCTGCTCT CCTTTGGCATATGACCCTTGCCCAAGGGGACTACATCCGGATCCTTAGAAGTGTCTGCAA CTTGCCTCCTCCATCCTCCCTCACAGGACGATGGACCAACCATGCCGCACTGTCTCCTCC ACCTTAGTGTCTCTGGCTCTGTCCCCAAGGGCTGGTTCCCAAAGCTCCTGCTATTGCTCA AGGAGGGAAGGTTCAGAGCAATAAAATTTCTTAAATAAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 502-591, - strand, RNAz p=0.983997 | |
| 625-722, - strand, RNAz p=0.723763 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 502-591, - strand, RNAz p=0.983997 | |
| 625-722, - strand, RNAz p=0.723763 |
| Aligned organism(s): 38 entry(ies) | More info |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
| 54-247, gnl|bosTau2|chr25 (22966733-22966540) | |
| 54-247, gnl|canFam2|chr6 (20151518-20151382) | |
| 54-247, gnl|danRer3|chrNA (127527399-127527263) | |
| 54-247, gnl|echTel1|scaffold_236685 (8079-8217) | |
| 54-247, gnl|hg17|chr16 (31013371-31013507) | |
| 54-247, gnl|Hg17|chr16 (31013569-31013377) | |
| 54-247, gnl|mm7|chr7 (123991959-123992095) | |
| 54-247, gnl|Mm7|chr7 (123992157-123991965) | |
| 54-247, gnl|oryCun1|scaffold_211153 (104081-103945) | |
| 54-247, gnl|panTro1|chr18 (31807247-31807383) | |
| 54-247, gnl|rheMac2|chr20 (29186599-29186735) | |
| 54-247, gnl|rn3|chr1 (187328945-187329081) | |
| 54-247, gnl|tetNig1|chr7 (1706656-1706527) | |
| 354-591, gnl|bosTau2|chr25 (22964960-22964722) | |
| 354-591, gnl|Hg17|chr16 (31010166-31009902) | |
| 354-591, gnl|Mm7|chr7 (123990051-123989793) | |
| 612-819, gnl|bosTau2|chr25 (22964728-22964527) | |
| 612-819, gnl|canFam2|chr6 (20153301-20153146) | |
| 612-819, gnl|canFam2|chr6 (20153302-20153145) | |
| 612-819, gnl|dasNov1|scaffold_272321 (3565-3396) | |
| 612-819, gnl|dasNov1|scaffold_272321 (3566-3396) | |
| 612-819, gnl|echTel1|scaffold_236685 (5997-6152) | |
| 612-819, gnl|echTel1|scaffold_236685 (5996-6152) | |
| 612-819, gnl|hg17|chr1 (58406100-58406259) | |
| 612-819, gnl|hg17|chr16 (31009680-31009840) | |
| 612-819, gnl|Hg17|chr16 (31009935-31009679) | |
| 612-819, gnl|loxAfr1|scaffold_97003 (3508-3352) | |
| 612-819, gnl|loxAfr1|scaffold_97003 (3509-3352) | |
| 612-819, gnl|mm7|chr7 (123989632-123989748) | |
| 612-819, gnl|mm7|chr7 (123989630-123989748) | |
| 612-819, gnl|oryCun1|scaffold_124065 (633-763) | |
| 612-819, gnl|oryCun1|scaffold_124065 (631-763) | |
| 612-819, gnl|panTro1|chr1 (56750019-56750179) | |
| 612-819, gnl|panTro1|chr18 (31802858-31803018) | |
| 612-819, gnl|rheMac2|chr1 (61084031-61084189) | |
| 612-819, gnl|rheMac2|chrX (25714576-25714416) | |
| 612-819, gnl|rn3|chr1 (187326637-187326754) | |
| 612-819, gnl|rn3|chr1 (187326635-187326754) |
| Aligned organism(s): 38 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 54-247, gnl|bosTau2|chr25 (22966733-22966540) | |
| 54-247, gnl|canFam2|chr6 (20151518-20151382) | |
| 54-247, gnl|danRer3|chrNA (127527399-127527263) | |
| 54-247, gnl|echTel1|scaffold_236685 (8079-8217) | |
| 54-247, gnl|hg17|chr16 (31013371-31013507) | |
| 54-247, gnl|Hg17|chr16 (31013569-31013377) | |
| 54-247, gnl|mm7|chr7 (123991959-123992095) | |
| 54-247, gnl|Mm7|chr7 (123992157-123991965) | |
| 54-247, gnl|oryCun1|scaffold_211153 (104081-103945) | |
| 54-247, gnl|panTro1|chr18 (31807247-31807383) | |
| 54-247, gnl|rheMac2|chr20 (29186599-29186735) | |
| 54-247, gnl|rn3|chr1 (187328945-187329081) | |
| 54-247, gnl|tetNig1|chr7 (1706656-1706527) | |
| 354-591, gnl|bosTau2|chr25 (22964960-22964722) | |
| 354-591, gnl|Hg17|chr16 (31010166-31009902) | |
| 354-591, gnl|Mm7|chr7 (123990051-123989793) | |
| 612-819, gnl|bosTau2|chr25 (22964728-22964527) | |
| 612-819, gnl|canFam2|chr6 (20153301-20153146) | |
| 612-819, gnl|canFam2|chr6 (20153302-20153145) | |
| 612-819, gnl|dasNov1|scaffold_272321 (3565-3396) | |
| 612-819, gnl|dasNov1|scaffold_272321 (3566-3396) | |
| 612-819, gnl|echTel1|scaffold_236685 (5997-6152) | |
| 612-819, gnl|echTel1|scaffold_236685 (5996-6152) | |
| 612-819, gnl|hg17|chr1 (58406100-58406259) | |
| 612-819, gnl|hg17|chr16 (31009680-31009840) | |
| 612-819, gnl|Hg17|chr16 (31009935-31009679) | |
| 612-819, gnl|loxAfr1|scaffold_97003 (3508-3352) | |
| 612-819, gnl|loxAfr1|scaffold_97003 (3509-3352) | |
| 612-819, gnl|mm7|chr7 (123989632-123989748) | |
| 612-819, gnl|mm7|chr7 (123989630-123989748) | |
| 612-819, gnl|oryCun1|scaffold_124065 (633-763) | |
| 612-819, gnl|oryCun1|scaffold_124065 (631-763) | |
| 612-819, gnl|panTro1|chr1 (56750019-56750179) | |
| 612-819, gnl|panTro1|chr18 (31802858-31803018) | |
| 612-819, gnl|rheMac2|chr1 (61084031-61084189) | |
| 612-819, gnl|rheMac2|chrX (25714576-25714416) | |
| 612-819, gnl|rn3|chr1 (187326637-187326754) | |
| 612-819, gnl|rn3|chr1 (187326635-187326754) |
| Expressed library(ies): 23 entry(ies) | More info |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
| fli (0.405762) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| nca (0.273748) | |
| cov (0.264306) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| jca (0.11396) |
| Expressed library(ies): 23 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| mcp (0.341297) | |
| nje (0.33184) | |
| cli (0.305623) | |
| lnt (0.284616) | |
| cga (0.279096) | |
| nca (0.273748) | |
| cov (0.264306) | |
| ese (0.253004) | |
| eep (0.245128) | |
| cly (0.241284) | |
| eru (0.240096) | |
| mas (0.210305) | |
| nep (0.183925) | |
| fty (0.17584) | |
| eye (0.170503) | |
| eli (0.151814) | |
| pty (0.142714) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| bla (0.124347) | |
| jca (0.11396) |