Ss1.1-Pig4-TMW8045B21.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGTTTCACAGCGCTGTCAGCGGAGAGCACGCCCATGCAGGTGGTGACCCTGCTCAACGAC CTGTACACCTGCCTTGACGCTGTCATAGACAACTTTGATGTGTACAAGGTGGAGACGATT GGTGACGCCTACATGGTGGTGTCGGGGCTCCCGGTGCGGAACGGAAAGCTACACGCCCGG GAGGTGGCCCGCATGGCCCTGGCGCTGCTGGACGCGGTGCGCTCCTTCCGCATCCGCCAC CGGCCCCAGGAGCAGCTGCGCTTGCGCATTGGCATCCACACAGGACCTGTGTGTGCTGGT GTGGTAGGGCTGAAGATGCCCCGTTACTGTCTCTTTGGGGACACAGTCAACACAGCTTCA AGAATGGAGTCTAACGGGGAAGCCCTGAAGATCCACTTGTCTTCTGAGACTAGGGCTGTC CTGGAGGAGTTTGGTGGTTTCGAGCTGGAGCTTCGAGGGGATGTGGAAATGAAGGGCAAA GGCAAAGTTCGGACCTACTGGCTCCTGGGGGAGCGGGGGAGTAGCACCCGAGGCTGACCT GGCTCCCCTCCTGGCCTTCCACACCTCCCTTCCCTGTGCCAGAGGTGACAGAGAGGCGCC AGGCTTCAGCCTCGCCCACAGCATCCTCACCATTGCCAAAGAAGTGGTTTGAACAGCTCA GGTGAGCCCACCCCATTGGAGACACCAGATATTACCTCTGAAAGAGGGCTGGTGTGGAGG AGAACTTGGGGCTCACAGGACTGGACCAGAACTCACAGTCATGCCCAGGGACCCCCACAC ATAGGCACAATCACTCGCTCTCCACCCTGACTCAGGCCAGGCCAGATGGGATGTGGATTC CTGGATCCTCCTGGCCGTCCCTGTGCCCTCCTCCTCCCTCAACCTTGCTACACTGTGACT TTTGTGGGGACAGGGGAAGAGCCCCCTGAGGGGGGCATGGGAAAAGGGACTGTAGGTGAA TCCAGGACCACCAACAGCCCCTGTTCCCCACCACCCGACGTTGGGTGCAGTGCCCAGGGC AGCAGAGGAAGGGCCGGAGGGCTGTGGGCCTGTATGCCTTGCTTCTCCTGTGAGTGGAGA CCATTAAAATCTTTATTCTAGTGACAGTGTCTTTTCTCGAGGGAGAGAGGGTGGCCAGAA AACACAGCCGTATTCTTCGCCCCCTGCTTCAAATAGAACCTGTTTCTCAAGCTGGGATTG CAATGTGGGATCTGAAACAAGGCTGCAGTTTCCCTTCAACTTTGAGAAGCCAGTGTCATA GGCTTTGAATTACCCTAGCAGTGCCGGCACTATTGGTTTTAGTCTTGTTTACACCTCTAA GAACTACTGAGGGCCTCCCAGAGTTTTTGTTTATGTGAGTCGTATCTATTGATATATTCT GTATTAGAAATTAAAACAAGGCTTTATCAACTCATTTAAAAGAACTATAATAAACCCATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGTTTCACAGCGCTGTCAGCGGAGAGCACGCCCATGCAGGTGGTGACCCTGCTCAACGAC CTGTACACCTGCCTTGACGCTGTCATAGACAACTTTGATGTGTACAAGGTGGAGACGATT GGTGACGCCTACATGGTGGTGTCGGGGCTCCCGGTGCGGAACGGAAAGCTACACGCCCGG GAGGTGGCCCGCATGGCCCTGGCGCTGCTGGACGCGGTGCGCTCCTTCCGCATCCGCCAC CGGCCCCAGGAGCAGCTGCGCTTGCGCATTGGCATCCACACAGGACCTGTGTGTGCTGGT GTGGTAGGGCTGAAGATGCCCCGTTACTGTCTCTTTGGGGACACAGTCAACACAGCTTCA AGAATGGAGTCTAACGGGGAAGCCCTGAAGATCCACTTGTCTTCTGAGACTAGGGCTGTC CTGGAGGAGTTTGGTGGTTTCGAGCTGGAGCTTCGAGGGGATGTGGAAATGAAGGGCAAA GGCAAAGTTCGGACCTACTGGCTCCTGGGGGAGCGGGGGAGTAGCACCCGAGGCTGACCT GGCTCCCCTCCTGGCCTTCCACACCTCCCTTCCCTGTGCCAGAGGTGACAGAGAGGCGCC AGGCTTCAGCCTCGCCCACAGCATCCTCACCATTGCCAAAGAAGTGGTTTGAACAGCTCA GGTGAGCCCACCCCATTGGAGACACCAGATATTACCTCTGAAAGAGGGCTGGTGTGGAGG AGAACTTGGGGCTCACAGGACTGGACCAGAACTCACAGTCATGCCCAGGGACCCCCACAC ATAGGCACAATCACTCGCTCTCCACCCTGACTCAGGCCAGGCCAGATGGGATGTGGATTC CTGGATCCTCCTGGCCGTCCCTGTGCCCTCCTCCTCCCTCAACCTTGCTACACTGTGACT TTTGTGGGGACAGGGGAAGAGCCCCCTGAGGGGGGCATGGGAAAAGGGACTGTAGGTGAA TCCAGGACCACCAACAGCCCCTGTTCCCCACCACCCGACGTTGGGTGCAGTGCCCAGGGC AGCAGAGGAAGGGCCGGAGGGCTGTGGGCCTGTATGCCTTGCTTCTCCTGTGAGTGGAGA CCATTAAAATCTTTATTCTAGTGACAGTGTCTTTTCTCGAGGGAGAGAGGGTGGCCAGAA AACACAGCCGTATTCTTCGCCCCCTGCTTCAAATAGAACCTGTTTCTCAAGCTGGGATTG CAATGTGGGATCTGAAACAAGGCTGCAGTTTCCCTTCAACTTTGAGAAGCCAGTGTCATA GGCTTTGAATTACCCTAGCAGTGCCGGCACTATTGGTTTTAGTCTTGTTTACACCTCTAA GAACTACTGAGGGCCTCCCAGAGTTTTTGTTTATGTGAGTCGTATCTATTGATATATTCT GTATTAGAAATTAAAACAAGGCTTTATCAACTCATTTAAAAGAACTATAATAAACCCATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 107-292, gnl|bosTau2|chr19 (15219603-15219417) | |
| 107-292, gnl|canFam2|chr5 (35850485-35850666) | |
| 107-292, gnl|danRer3|chrNA (28742169-28742350) | |
| 107-292, gnl|dasNov1|scaffold_35611 (10056-10243) | |
| 107-292, gnl|echTel1|scaffold_101650 (1155-967) | |
| 107-292, gnl|fr1|chrUn (49506665-49506483) | |
| 107-292, gnl|galGal2|chr1_random (467191-467378) | |
| 107-292, gnl|hg17|chr17 (7859368-7859555) | |
| 107-292, gnl|Hg17|chr17 (7859369-7859551) | |
| 107-292, gnl|loxAfr1|scaffold_5876 (18127-17940) | |
| 107-292, gnl|mm7|chr11 (69305880-69305694) | |
| 107-292, gnl|Mm7|chr11 (69305877-69305695) | |
| 107-292, gnl|monDom2|scaffold_66 (5231681-5231868) | |
| 107-292, gnl|oryCun1|scaffold_191171 (9557-9371) | |
| 107-292, gnl|panTro1|chr19_random (43879765-43879578) | |
| 107-292, gnl|rheMac2|chr16 (7766573-7766760) | |
| 107-292, gnl|rn3|chr10 (56028211-56028024) | |
| 107-292, gnl|tetNig1|chrUn_random (43921420-43921233) | |
| 107-292, gnl|xenTro1|scaffold_814 (101808-101993) | |
| 473-794, gnl|bosTau2|chr3 (7930551-7930870) | |
| 473-794, gnl|Hg17|chr1 (150478899-150479193) | |
| 473-794, gnl|Mm7|chr3 (90581919-90581631) | |
| 1016-1440, gnl|bosTau2|chr3 (7931151-7931550) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 107-292, gnl|bosTau2|chr19 (15219603-15219417) | |
| 107-292, gnl|canFam2|chr5 (35850485-35850666) | |
| 107-292, gnl|danRer3|chrNA (28742169-28742350) | |
| 107-292, gnl|dasNov1|scaffold_35611 (10056-10243) | |
| 107-292, gnl|echTel1|scaffold_101650 (1155-967) | |
| 107-292, gnl|fr1|chrUn (49506665-49506483) | |
| 107-292, gnl|galGal2|chr1_random (467191-467378) | |
| 107-292, gnl|hg17|chr17 (7859368-7859555) | |
| 107-292, gnl|Hg17|chr17 (7859369-7859551) | |
| 107-292, gnl|loxAfr1|scaffold_5876 (18127-17940) | |
| 107-292, gnl|mm7|chr11 (69305880-69305694) | |
| 107-292, gnl|Mm7|chr11 (69305877-69305695) | |
| 107-292, gnl|monDom2|scaffold_66 (5231681-5231868) | |
| 107-292, gnl|oryCun1|scaffold_191171 (9557-9371) | |
| 107-292, gnl|panTro1|chr19_random (43879765-43879578) | |
| 107-292, gnl|rheMac2|chr16 (7766573-7766760) | |
| 107-292, gnl|rn3|chr10 (56028211-56028024) | |
| 107-292, gnl|tetNig1|chrUn_random (43921420-43921233) | |
| 107-292, gnl|xenTro1|scaffold_814 (101808-101993) | |
| 473-794, gnl|bosTau2|chr3 (7930551-7930870) | |
| 473-794, gnl|Hg17|chr1 (150478899-150479193) | |
| 473-794, gnl|Mm7|chr3 (90581919-90581631) | |
| 1016-1440, gnl|bosTau2|chr3 (7931151-7931550) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nje (0.16592) | |
| cli (0.152812) | |
| cst (0.140036) | |
| med (0.116252) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.16592) | |
| cli (0.152812) | |
| cst (0.140036) | |
| med (0.116252) |