Non-Coding RNA Search

Ss1.1-Pig4-TMW8045C05.3

Sequence:


               
               GGAACCCACAAAAGGGAGCCAGGTCTCTTGTTACTCTCCTCAAAACTTTTTTTTCCTTTT
TTTAAAAAAAATGGTCAGTAAAAGCACCTTTGACAGAATTCCCCCACTTCCCAAAGAACC
AGGGGAGTCCTTTCCCACCCTCCGCCGTTCTGGATTTCGTGATCCTTCACATGCCAGCCC
GCCGCCGCCGCCTCCGCCTGTGCTTGAGCACTGGACTCTTGAAGGAGGGGCACAGGTAGA
AGGACGAACTGTTGACCTAGACAGGTCACCTGTCCACAGAAAGAAGAGAATTTGTCTCTA
AAGTTGGTTGATGACTGATCTGACTCTTGGAAGAGGGTTGGACTGAATTTGGAAGCAGAA
CAGGGTCTTTCTGACTCATTTAGGGTAGGGAGAGTGCCTACCACGGAGGGTTGGGGCTTC
AAGACTTGCTTGTTGTTCTTGCCGTGAGTGTTCCATGAACACCAAACCTTCCCTACTGCC
GTGTGCAGAAGCCCTTGAATACAGAGCCCATGAATCTGGGAAGCTCCCAGAACTCAGTTT
AGTCCTGATTTTCAGTCCTGTTGCTAGGCCTCCTGTCTGGATTTGCCTGAAGAGTTTGGA
TGAAACGTGGCAGGTTGGGTAGCGCCCCTGGCCCAGATCATTTTCCACCCTCCACCTACG
GTCCCAGAAGGTAAAGCGGACACTGAGGCAGGTAGAGAGCTGGGCTTCAGGGACAGGCAG
AGGGCCTCTGCTCCACTGCTGCCAGCTACGGGGAGCGCCAGGTCCTGGCCTGAGACTGCT
GGTGTGGGGCAGGCACAGACAGCATATCCACGCCCGGGTCTTTATGCATGAAGATTATGT
AAAGGTTTTTATTGAAAAATATATATATATAAATAAATGATCTAGATTATTTTCCTCTTT
TTCTGAAGCTACTTTCTTAAAAAAAATAAAATAAAATGAAATGTTTATAGCAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCCACAAAAGGGAGCCAGGTCTCTTGTTACTCTCCTCAAAACTTTTTTTTCCTTTT
TTTAAAAAAAATGGTCAGTAAAAGCACCTTTGACAGAATTCCCCCACTTCCCAAAGAACC
AGGGGAGTCCTTTCCCACCCTCCGCCGTTCTGGATTTCGTGATCCTTCACATGCCAGCCC
GCCGCCGCCGCCTCCGCCTGTGCTTGAGCACTGGACTCTTGAAGGAGGGGCACAGGTAGA
AGGACGAACTGTTGACCTAGACAGGTCACCTGTCCACAGAAAGAAGAGAATTTGTCTCTA
AAGTTGGTTGATGACTGATCTGACTCTTGGAAGAGGGTTGGACTGAATTTGGAAGCAGAA
CAGGGTCTTTCTGACTCATTTAGGGTAGGGAGAGTGCCTACCACGGAGGGTTGGGGCTTC
AAGACTTGCTTGTTGTTCTTGCCGTGAGTGTTCCATGAACACCAAACCTTCCCTACTGCC
GTGTGCAGAAGCCCTTGAATACAGAGCCCATGAATCTGGGAAGCTCCCAGAACTCAGTTT
AGTCCTGATTTTCAGTCCTGTTGCTAGGCCTCCTGTCTGGATTTGCCTGAAGAGTTTGGA
TGAAACGTGGCAGGTTGGGTAGCGCCCCTGGCCCAGATCATTTTCCACCCTCCACCTACG
GTCCCAGAAGGTAAAGCGGACACTGAGGCAGGTAGAGAGCTGGGCTTCAGGGACAGGCAG
AGGGCCTCTGCTCCACTGCTGCCAGCTACGGGGAGCGCCAGGTCCTGGCCTGAGACTGCT
GGTGTGGGGCAGGCACAGACAGCATATCCACGCCCGGGTCTTTATGCATGAAGATTATGT
AAAGGTTTTTATTGAAAAATATATATATATAAATAAATGATCTAGATTATTTTCCTCTTT
TTCTGAAGCTACTTTCTTAAAAAAAATAAAATAAAATGAAATGTTTATAGCAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               431-548, - strand, RNAz p=0.796303

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               431-548, - strand, RNAz p=0.796303

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-938, gnl|bosTau2|chr15 (32817945-32816999)
               

               
               1-938, gnl|Hg17|chr11 (3653773-3652834)
               

               
               1-938, gnl|Mm7|chr7 (98166371-98165508)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-938, gnl|bosTau2|chr15 (32817945-32816999)
               

               
               1-938, gnl|Hg17|chr11 (3653773-3652834)
               

               
               1-938, gnl|Mm7|chr7 (98166371-98165508)

Expressed library(ies): 8 entry(ies)

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Expressed library(ies): 8 entry(ies)

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               tes (0.415628)
               

               
               pla (0.267344)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

Expressed library(ies): 8 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.415628)
               

               
               pla (0.267344)
               

               
               ill (0.175593)
               

               
               hyp (0.142837)
               

               
               ste (0.135208)
               

               
               ute (0.132784)
               

               
               med (0.116252)
               

               
               nbm (0.0993246)

	1-938, gnl\|bosTau2\|chr15 (32817945-32816999)
	1-938, gnl\|Hg17\|chr11 (3653773-3652834)
	1-938, gnl\|Mm7\|chr7 (98166371-98165508)

	tes (0.415628)
	pla (0.267344)
	ill (0.175593)
	hyp (0.142837)
	ste (0.135208)
	ute (0.132784)
	med (0.116252)
	nbm (0.0993246)