Non-Coding RNA Search

Ss1.1-Pig4-TMW8045C07.3

Sequence:


               
               TGGCGCCCATGAAGCTCCCCACTTCTTTGCGAACATTGTTCTGTAAGTGGCAGGGGATGG
GGACAGCGGCCTGCCCCCCTCTATCCCCGCAGCTCAGCTGAGCCCCTGATTCGAACAGGG
CAGTAGGATGTCTCTGAGCGGTGCTGAGAGGCCACCACAAGCCTTTGTCTTTGCAGGTGC
TTTTTCTTAAAAAGGTAAGAAACTGAGGTGGGGTTTCGTTTTCTAATATTAAGAATATAT
TATGAAAACATACAGGACTGACCCTCAGGCATCTTCCCATACTCCCCAACAAATCCCCAG
AAGAGAGTATGGAAGGTAGAATAGAAGGCCAGTTGGGCTTTGGTTGTGTAGCCAAGAAGA
GGTCAGCTGCCGAGACCCCCAGTGGGCACAGTTGCCCTCCTGCCCTGGGGCCTGTGCCCT
GCCCTGCCCACAGCCACCCCACTGGCCTTGTCCATTGCTTATTTCTCCTGTTTAGTCAAG
AGAAAATGAGCACTGCATTTCTAGAAAATGAACTCTTAATCGGGGGCAATGAAGAGTGCA
GTGTTAGAACTCCTGCTGCCCTGCTAGCTGGTCGTGGAGGATAAGTGCCAGGCAGGGTTC
AGAAAGCCCAGTGCACTTAAACTGATCCTAAAAGCACTCACAGCACTCTGGACACCAGGA
GGGCTAGACTCCTCAGAATCTGTCTTACCTTTTGCCCAAAGAAACATGCTCGGTGTTGGG
GGCATTCCCTCCCATGAACCCTGACCCTTCTGTTACCTCAGGGCCTTGGTACCTGGATAC
TGCCACAGAGCTGGGGCGGGGGGAGGGGCTTATTTTTAAATAAATAACTGTTCAAAGTTG
GGGGATTTTTTAAAATTAAGAAAAAGGAAAGCTATTCTGTATTGCACCTTTTCACAATTT
AATACATTTTCTTACATTTTCCTGTGACTTTTGAAATTAAACCATTGTGTGTCTTGTAAT
GTCCTAGTTGAGCTGCTGGCCAGCAGCTTCCTTCAGGAGGGTTTGAAACAAATGTGTCTG
TTGCCTTGTCACCTGCTGGAAGGGGTCCTGGAGGGCTGCTGGGGACTAGTTGCTGTACAC
ACTTGTTTGGCCTTTTCTGTAGTTGATGCTGTAAACTCTATGGCTTTTTGAAAAACAATT
TCATGTTTTTATTTAGTATTGGAAATCCAATACACTTTTTTTAATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCGCCCATGAAGCTCCCCACTTCTTTGCGAACATTGTTCTGTAAGTGGCAGGGGATGG
GGACAGCGGCCTGCCCCCCTCTATCCCCGCAGCTCAGCTGAGCCCCTGATTCGAACAGGG
CAGTAGGATGTCTCTGAGCGGTGCTGAGAGGCCACCACAAGCCTTTGTCTTTGCAGGTGC
TTTTTCTTAAAAAGGTAAGAAACTGAGGTGGGGTTTCGTTTTCTAATATTAAGAATATAT
TATGAAAACATACAGGACTGACCCTCAGGCATCTTCCCATACTCCCCAACAAATCCCCAG
AAGAGAGTATGGAAGGTAGAATAGAAGGCCAGTTGGGCTTTGGTTGTGTAGCCAAGAAGA
GGTCAGCTGCCGAGACCCCCAGTGGGCACAGTTGCCCTCCTGCCCTGGGGCCTGTGCCCT
GCCCTGCCCACAGCCACCCCACTGGCCTTGTCCATTGCTTATTTCTCCTGTTTAGTCAAG
AGAAAATGAGCACTGCATTTCTAGAAAATGAACTCTTAATCGGGGGCAATGAAGAGTGCA
GTGTTAGAACTCCTGCTGCCCTGCTAGCTGGTCGTGGAGGATAAGTGCCAGGCAGGGTTC
AGAAAGCCCAGTGCACTTAAACTGATCCTAAAAGCACTCACAGCACTCTGGACACCAGGA
GGGCTAGACTCCTCAGAATCTGTCTTACCTTTTGCCCAAAGAAACATGCTCGGTGTTGGG
GGCATTCCCTCCCATGAACCCTGACCCTTCTGTTACCTCAGGGCCTTGGTACCTGGATAC
TGCCACAGAGCTGGGGCGGGGGGAGGGGCTTATTTTTAAATAAATAACTGTTCAAAGTTG
GGGGATTTTTTAAAATTAAGAAAAAGGAAAGCTATTCTGTATTGCACCTTTTCACAATTT
AATACATTTTCTTACATTTTCCTGTGACTTTTGAAATTAAACCATTGTGTGTCTTGTAAT
GTCCTAGTTGAGCTGCTGGCCAGCAGCTTCCTTCAGGAGGGTTTGAAACAAATGTGTCTG
TTGCCTTGTCACCTGCTGGAAGGGGTCCTGGAGGGCTGCTGGGGACTAGTTGCTGTACAC
ACTTGTTTGGCCTTTTCTGTAGTTGATGCTGTAAACTCTATGGCTTTTTGAAAAACAATT
TCATGTTTTTATTTAGTATTGGAAATCCAATACACTTTTTTTAATCCA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

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               554-1188, gnl|bosTau2|chr10 (13211274-13211902)
               

               
               554-1188, gnl|Hg17|chr15 (71383965-71384593)
               

               
               554-1188, gnl|Mm7|chr9 (58904136-58903510)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               554-1188, gnl|bosTau2|chr10 (13211274-13211902)
               

               
               554-1188, gnl|Hg17|chr15 (71383965-71384593)
               

               
               554-1188, gnl|Mm7|chr9 (58904136-58903510)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fce (0.271592)
               

               
               cut (0.169924)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fce (0.271592)
               

               
               cut (0.169924)
               

               
               eru (0.120048)
               

               
               ebs (0.118301)
               

               
               med (0.116252)

	554-1188, gnl\|bosTau2\|chr10 (13211274-13211902)
	554-1188, gnl\|Hg17\|chr15 (71383965-71384593)
	554-1188, gnl\|Mm7\|chr9 (58904136-58903510)

	fce (0.271592)
	cut (0.169924)
	eru (0.120048)
	ebs (0.118301)
	med (0.116252)