Non-Coding RNA Search

Ss1.1-Pig4-TMW8045C15.5

Sequence:


               
               GGAACCTCAAGGTGGACCAGCTCTTCTACCTCAGCAGCTGGTCCAGAGCAGACTGCCGGC
GCATCCTGGAGCGCTACCAGTGGGACCTCTCAGCTGCCAGCCGCTACGTCCTGGCCCGGT
CTTGAGCTCTGCTCCTTTGGGCATGGCCACCAGAGGGCCCGAAGGCCTGGCCACGTGGGA
CCAAGCAGAACTGGAATACGGTCCCCACAGGGCATTTTCCCAATGGGGAGAGCCTGCCGT
AGGCGGGTACAGGAGGAGCCCAGCACCGGGCACTGGGAGCGTCCCCTCACCCTGCCGTCT
GGCCTCCGAGGCCGCCGGCTCCCCTGGCTGGGCCACAGCAGGAGGCGGTCCTCGCTACAC
AGGCCCGCCCAAGAGGCGGACTGGCAGGAACAGAGCTGCTAAACATCACACCGTAGGAAG
CTTCTGTCGCTACAGAGAACGAGCAAGTGGCCATACTGGGCCGTGGGAACAGCCATCCTG
AACCGCCATCAGCTCCCACCCTGGGCTCTGTGGGAGCAGCCATACTGACCGGGGCACATG
GCTCCAACCGCCCCAGCTTCGTCGGGGGCCATCGTGGATGATGACAGTGGCCCTCTTAGA
CTCAAGGACACTTGATCCTGGCAGCCTGGATGGTGAAATGGGTCAGCGCCTGCCCAGCCC
AGCGGTCACATTTCCCTTTGTTTCTTCCCACACCAACTCTTTCTCCTACCCTCTCCCAGG
ACATACACCTTCCAGTGTCCAAAAAGTTACAAAGTTTATATGAACAGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAACCTCAAGGTGGACCAGCTCTTCTACCTCAGCAGCTGGTCCAGAGCAGACTGCCGGC
GCATCCTGGAGCGCTACCAGTGGGACCTCTCAGCTGCCAGCCGCTACGTCCTGGCCCGGT
CTTGAGCTCTGCTCCTTTGGGCATGGCCACCAGAGGGCCCGAAGGCCTGGCCACGTGGGA
CCAAGCAGAACTGGAATACGGTCCCCACAGGGCATTTTCCCAATGGGGAGAGCCTGCCGT
AGGCGGGTACAGGAGGAGCCCAGCACCGGGCACTGGGAGCGTCCCCTCACCCTGCCGTCT
GGCCTCCGAGGCCGCCGGCTCCCCTGGCTGGGCCACAGCAGGAGGCGGTCCTCGCTACAC
AGGCCCGCCCAAGAGGCGGACTGGCAGGAACAGAGCTGCTAAACATCACACCGTAGGAAG
CTTCTGTCGCTACAGAGAACGAGCAAGTGGCCATACTGGGCCGTGGGAACAGCCATCCTG
AACCGCCATCAGCTCCCACCCTGGGCTCTGTGGGAGCAGCCATACTGACCGGGGCACATG
GCTCCAACCGCCCCAGCTTCGTCGGGGGCCATCGTGGATGATGACAGTGGCCCTCTTAGA
CTCAAGGACACTTGATCCTGGCAGCCTGGATGGTGAAATGGGTCAGCGCCTGCCCAGCCC
AGCGGTCACATTTCCCTTTGTTTCTTCCCACACCAACTCTTTCTCCTACCCTCTCCCAGG
ACATACACCTTCCAGTGTCCAAAAAGTTACAAAGTTTATATGAACAGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               108-211, - strand, RNAz p=0.914351

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               108-211, - strand, RNAz p=0.914351

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               10-211, gnl|bosTau2|chr19 (20856143-20855942)
               

               
               10-211, gnl|Hg17|chr17 (7233012-7233226)
               

               
               10-211, gnl|Mm7|chr11 (69933291-69933080)
               


               
               246-764, gnl|bosTau2|chr19 (20855932-20855422)
               

               
               246-764, gnl|Hg17|chr17 (7233264-7233804)
               

               
               246-764, gnl|Mm7|chr11 (69933049-69932587)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-211, gnl|bosTau2|chr19 (20856143-20855942)
               

               
               10-211, gnl|Hg17|chr17 (7233012-7233226)
               

               
               10-211, gnl|Mm7|chr11 (69933291-69933080)
               


               
               246-764, gnl|bosTau2|chr19 (20855932-20855422)
               

               
               246-764, gnl|Hg17|chr17 (7233264-7233804)
               

               
               246-764, gnl|Mm7|chr11 (69933049-69932587)

Expressed library(ies): 3 entry(ies)

More info

Expressed library(ies): 3 entry(ies)

Help | Less info


               
               duo (0.172801)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               cty (0.10408)
               

               
               jej (0.0989218)

	10-211, gnl\|bosTau2\|chr19 (20856143-20855942)
	10-211, gnl\|Hg17\|chr17 (7233012-7233226)
	10-211, gnl\|Mm7\|chr11 (69933291-69933080)

	246-764, gnl\|bosTau2\|chr19 (20855932-20855422)
	246-764, gnl\|Hg17\|chr17 (7233264-7233804)
	246-764, gnl\|Mm7\|chr11 (69933049-69932587)