Ss1.1-Pig4-TMW8045C19.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGCAGAGCTGCAGTCTCCGCCTTGCAGCTTGGAGTGTGCCCGCTGCGCTGCAGCTGTCCG TGCTTGCCCTCTCCTACCCTCCGCCGGCACTGCTGTCACCATGCCCAACTTCGCAGGCAC CTGGAAGATGCGCAGCAGCGAGAATTTCGACGAGCTGCTTAAGGCACTGGGTGTGAACGC CATGCTGAGGAAAGTGGCCGTGGCGGCCGCGTCCAAGCCGCACGTGGAGATCCGCCAGGA CGGGGATCAATTCTACATCAAGACATCCACCACGGTGCGCACCACCGAGATCAACTTCAA GGTCGGAGAAGGCTTTGAAGAGGAGACAGTGGACGGACGCAAGTGCAGGAGTTTAGCCAC TTGGGAGAATGAGAACAAGATCCACTGCACACAAACTCTGCTCGAGGGGGACGGCCCCAA AACCTACTGGACCCGCGAGCTGGCCAACGACGAGCTCATCCTGACGTTTGGCGCCGATGA CGTGGTCTGCACAAGAATTTATGTTCGGGAGTGAAGGCGGCCAGCTTGTTCCTGCTTTGG GGGTGGGATGCATGTTCCCCTGAGGAATGTCATAGTTCTGAGCTGCCAGTGGACCTCCTC TTCCCCATTATCAACCGTAGGTGATCCCGTTTTCCCCACGAGAATGCTCTAGTGTTTTCC CCCAAGGCTTCGTGCCTCTGTGTCCCTGGGCTCCATAGTTTGGCATCTGGATGGTTTTAT CAGTCATTAAACTGGTTGTACACAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGCAGAGCTGCAGTCTCCGCCTTGCAGCTTGGAGTGTGCCCGCTGCGCTGCAGCTGTCCG TGCTTGCCCTCTCCTACCCTCCGCCGGCACTGCTGTCACCATGCCCAACTTCGCAGGCAC CTGGAAGATGCGCAGCAGCGAGAATTTCGACGAGCTGCTTAAGGCACTGGGTGTGAACGC CATGCTGAGGAAAGTGGCCGTGGCGGCCGCGTCCAAGCCGCACGTGGAGATCCGCCAGGA CGGGGATCAATTCTACATCAAGACATCCACCACGGTGCGCACCACCGAGATCAACTTCAA GGTCGGAGAAGGCTTTGAAGAGGAGACAGTGGACGGACGCAAGTGCAGGAGTTTAGCCAC TTGGGAGAATGAGAACAAGATCCACTGCACACAAACTCTGCTCGAGGGGGACGGCCCCAA AACCTACTGGACCCGCGAGCTGGCCAACGACGAGCTCATCCTGACGTTTGGCGCCGATGA CGTGGTCTGCACAAGAATTTATGTTCGGGAGTGAAGGCGGCCAGCTTGTTCCTGCTTTGG GGGTGGGATGCATGTTCCCCTGAGGAATGTCATAGTTCTGAGCTGCCAGTGGACCTCCTC TTCCCCATTATCAACCGTAGGTGATCCCGTTTTCCCCACGAGAATGCTCTAGTGTTTTCC CCCAAGGCTTCGTGCCTCTGTGTCCCTGGGCTCCATAGTTTGGCATCTGGATGGTTTTAT CAGTCATTAAACTGGTTGTACACAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 170-349, gnl|bosTau2|chr21 (1396855-1397034) | |
| 170-349, gnl|canFam2|chr7 (44249710-44249849) | |
| 170-349, gnl|danRer3|chr25 (5133063-5133196) | |
| 170-349, gnl|dasNov1|scaffold_63408 (1055-1194) | |
| 170-349, gnl|echTel1|scaffold_181564 (1480-1341) | |
| 170-349, gnl|fr1|chrUn (14299411-14299273) | |
| 170-349, gnl|galGal2|chr10 (4499141-4499002) | |
| 170-349, gnl|hg17|chr15 (76420432-76420571) | |
| 170-349, gnl|Hg17|chr15 (76420439-76420618) | |
| 170-349, gnl|loxAfr1|scaffold_58986 (27826-27707) | |
| 170-349, gnl|mm7|chr9 (54794801-54794940) | |
| 170-349, gnl|Mm7|chr9 (54794808-54794987) | |
| 170-349, gnl|monDom2|scaffold_41 (16847133-16847272) | |
| 170-349, gnl|oryCun1|scaffold_168634 (1232-1093) | |
| 170-349, gnl|panTro1|chr16 (77077141-77077280) | |
| 170-349, gnl|rheMac2|chr7 (57382782-57382921) | |
| 170-349, gnl|rn3|chr8 (58337067-58337206) | |
| 170-349, gnl|tetNig1|chr13 (8032216-8032355) | |
| 170-349, gnl|xenTro1|scaffold_62 (1675094-1675227) | |
| 463-744, gnl|bosTau2|chr21 (1402875-1403156) | |
| 463-744, gnl|Hg17|chr15 (76427323-76427616) | |
| 463-744, gnl|Mm7|chr9 (54802151-54802436) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 170-349, gnl|bosTau2|chr21 (1396855-1397034) | |
| 170-349, gnl|canFam2|chr7 (44249710-44249849) | |
| 170-349, gnl|danRer3|chr25 (5133063-5133196) | |
| 170-349, gnl|dasNov1|scaffold_63408 (1055-1194) | |
| 170-349, gnl|echTel1|scaffold_181564 (1480-1341) | |
| 170-349, gnl|fr1|chrUn (14299411-14299273) | |
| 170-349, gnl|galGal2|chr10 (4499141-4499002) | |
| 170-349, gnl|hg17|chr15 (76420432-76420571) | |
| 170-349, gnl|Hg17|chr15 (76420439-76420618) | |
| 170-349, gnl|loxAfr1|scaffold_58986 (27826-27707) | |
| 170-349, gnl|mm7|chr9 (54794801-54794940) | |
| 170-349, gnl|Mm7|chr9 (54794808-54794987) | |
| 170-349, gnl|monDom2|scaffold_41 (16847133-16847272) | |
| 170-349, gnl|oryCun1|scaffold_168634 (1232-1093) | |
| 170-349, gnl|panTro1|chr16 (77077141-77077280) | |
| 170-349, gnl|rheMac2|chr7 (57382782-57382921) | |
| 170-349, gnl|rn3|chr8 (58337067-58337206) | |
| 170-349, gnl|tetNig1|chr13 (8032216-8032355) | |
| 170-349, gnl|xenTro1|scaffold_62 (1675094-1675227) | |
| 463-744, gnl|bosTau2|chr21 (1402875-1403156) | |
| 463-744, gnl|Hg17|chr15 (76427323-76427616) | |
| 463-744, gnl|Mm7|chr9 (54802151-54802436) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| elu (1.15607) | |
| eye (1.02302) | |
| eep (0.490256) | |
| eru (0.360144) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| med (0.116252) | |
| eje (0.0988338) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (1.15607) | |
| eye (1.02302) | |
| eep (0.490256) | |
| eru (0.360144) | |
| nbm (0.297974) | |
| nca (0.273748) | |
| ebs (0.236602) | |
| gul (0.177588) | |
| fhi (0.169578) | |
| pla (0.133672) | |
| nmm (0.132802) | |
| ute (0.132784) | |
| cov (0.132153) | |
| thg (0.126791) | |
| pgl (0.118483) | |
| med (0.116252) | |
| eje (0.0988338) |