Non-Coding RNA Search

Ss1.1-Pig4-TMW8045D04.3

Sequence:


               
               AAATGTTTTAAGGAAAAGCAGAAACTTAGAAGTGAGAATCACTTGTATTTTGAGTTGGAA
ATTATGGAACTCCTATATTATGATCATACGCATTTTGAAGAACAGATGTTTAGAATGACC
AAAGCTCACCTGTTCTTTTTGTTTCAGTTGCTTTGGCAAAACTTGATTCCAGCCCCTTTT
CTTTCAGTATTGTGTCTATTTTTCTTCATTTCCTCTCACATAAATCTTTGATTCTGCCTC
CACTAAATCTTTGATTCTTGTTCCACGTACCTGTTGGTAGCAGGATGCTAGTAGCATCTG
TGTGGTCCTCGTTCTGTTTCCTCATAACGTCTATGTTCATTTTCATGGCTGACCTAAGCT
CAAACCCTGCCTCGGCCTGGCAGGAGTGGGTGTTCCCTACTGATAACATCGTCGTATTTG
ATGCGAACTCTATTCTTGCAGTGTGTTTCCTTTGTGACTCAAGGTTGAATAATGCCTGTG
AACTGCAAACTTGGCTTATGATTAACTTGGTGCAATAAAGTTCCTTTCTAGCCATTTCTG
GTTTAGAAAACATTCAGCCATCCTAGAAACTAGCAATATTTATTTATGCCTCATTTATTT
TACCTTTAGTTTTAGATGAGGTAACCATAGTCTTTCACTTATGGGTACTAAGCAAGGTCC
ATTGTAGTGTAGCTGAAGAGAATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTT
GCTTCCTATTTAATGTCTAAATGCTATTGTGTTTTTGTTTAAAATCTTAATAATGGTTCC
GTTCCATGTCAATTTCAAAGAACTAAGGTTTTGCTACTAGTGTCAGCCACTTATTCTCCC
ACTAATTGGGATTTCCCACTAATTTTGTTTTGTTTTGTTTTTCCCCTGAAATACAAGTTT
TTAGGAAATCCTAGAAGAGGGGTGGGTGCATGTCTTAATGCTGGGAAACAGCAACTCTGG
GGTTGAATTTACTTGAATGGATTAAGAATTGCATTGTTACAGAGCTAGAAAAAATTTATG
TATGAAAAATGATAATAGCCTTACACTGAGTACAAATAATACTTAAAAGCATGTGAAGAT
GTGATCATTTGTGATGTTACTTGTAAAAAAAGTATATATACATCTTTTGAAGTGTTGAAA
GGAAAATAGTACTTTATATTCTTTATCATATCACTTTTTGTAAGTGTTGAATATATTCCT
GTTTATTTTTCTATGTTCTGTTTTGTAGCCTTAAGAAGTGTTTCAAACATATCTGAATGT
ATAAAATAAGAGTAAATGCCCTACATGGTGTGATGCTGCATTATATATAAAACTGTGTGC
ATATATTAAATTTTGTCTCTTGAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAATGTTTTAAGGAAAAGCAGAAACTTAGAAGTGAGAATCACTTGTATTTTGAGTTGGAA
ATTATGGAACTCCTATATTATGATCATACGCATTTTGAAGAACAGATGTTTAGAATGACC
AAAGCTCACCTGTTCTTTTTGTTTCAGTTGCTTTGGCAAAACTTGATTCCAGCCCCTTTT
CTTTCAGTATTGTGTCTATTTTTCTTCATTTCCTCTCACATAAATCTTTGATTCTGCCTC
CACTAAATCTTTGATTCTTGTTCCACGTACCTGTTGGTAGCAGGATGCTAGTAGCATCTG
TGTGGTCCTCGTTCTGTTTCCTCATAACGTCTATGTTCATTTTCATGGCTGACCTAAGCT
CAAACCCTGCCTCGGCCTGGCAGGAGTGGGTGTTCCCTACTGATAACATCGTCGTATTTG
ATGCGAACTCTATTCTTGCAGTGTGTTTCCTTTGTGACTCAAGGTTGAATAATGCCTGTG
AACTGCAAACTTGGCTTATGATTAACTTGGTGCAATAAAGTTCCTTTCTAGCCATTTCTG
GTTTAGAAAACATTCAGCCATCCTAGAAACTAGCAATATTTATTTATGCCTCATTTATTT
TACCTTTAGTTTTAGATGAGGTAACCATAGTCTTTCACTTATGGGTACTAAGCAAGGTCC
ATTGTAGTGTAGCTGAAGAGAATGCATATTTGGCTACACTATTTCTGTTTACTGTATTTT
GCTTCCTATTTAATGTCTAAATGCTATTGTGTTTTTGTTTAAAATCTTAATAATGGTTCC
GTTCCATGTCAATTTCAAAGAACTAAGGTTTTGCTACTAGTGTCAGCCACTTATTCTCCC
ACTAATTGGGATTTCCCACTAATTTTGTTTTGTTTTGTTTTTCCCCTGAAATACAAGTTT
TTAGGAAATCCTAGAAGAGGGGTGGGTGCATGTCTTAATGCTGGGAAACAGCAACTCTGG
GGTTGAATTTACTTGAATGGATTAAGAATTGCATTGTTACAGAGCTAGAAAAAATTTATG
TATGAAAAATGATAATAGCCTTACACTGAGTACAAATAATACTTAAAAGCATGTGAAGAT
GTGATCATTTGTGATGTTACTTGTAAAAAAAGTATATATACATCTTTTGAAGTGTTGAAA
GGAAAATAGTACTTTATATTCTTTATCATATCACTTTTTGTAAGTGTTGAATATATTCCT
GTTTATTTTTCTATGTTCTGTTTTGTAGCCTTAAGAAGTGTTTCAAACATATCTGAATGT
ATAAAATAAGAGTAAATGCCCTACATGGTGTGATGCTGCATTATATATAAAACTGTGTGC
ATATATTAAATTTTGTCTCTTGAT

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               930-1343, gnl|bosTau2|chr10 (1877440-1877014)
               

               
               930-1343, gnl|Hg17|chr4 (146412825-146412420)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               930-1343, gnl|bosTau2|chr10 (1877440-1877014)
               

               
               930-1343, gnl|Hg17|chr4 (146412825-146412420)

Expressed library(ies): 17 entry(ies)

More info

Expressed library(ies): 17 entry(ies)

Help | Less info


               
               tra (0.61546)
               

               
               ret (0.514933)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tra (0.61546)
               

               
               ret (0.514933)
               

               
               amn (0.417711)
               

               
               vin (0.332557)
               

               
               liv (0.292569)
               

               
               sag (0.182715)
               

               
               fty (0.17584)
               

               
               rec (0.17307)
               

               
               isp (0.150376)
               

               
               fat (0.147427)
               

               
               ski (0.146735)
               

               
               lin (0.145603)
               

               
               lyg (0.133103)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	930-1343, gnl\|bosTau2\|chr10 (1877440-1877014)
	930-1343, gnl\|Hg17\|chr4 (146412825-146412420)

	tra (0.61546)
	ret (0.514933)
	amn (0.417711)
	vin (0.332557)
	liv (0.292569)
	sag (0.182715)
	fty (0.17584)
	rec (0.17307)
	isp (0.150376)
	fat (0.147427)
	ski (0.146735)
	lin (0.145603)
	lyg (0.133103)
	thg (0.126791)
	ese (0.126502)
	spc (0.113366)
	cty (0.10408)