Non-Coding RNA Search

Ss1.1-Pig4-TMW8045D10.3

Sequence:


               
               AAAAAAAAAAAAAAAAAAAAAAAATACTCTGTAGCTCCATCCAAATCAAGAAATCGCCAG
CATCTCTGAAGCCCACTGTGCCCTTCCCTGACTCACAACCTCTTCCAATACCCCTTTTCT
AGCCTTCTGCTTTTTTCCTTTTATTTTCACCCCTCAATTTGACTTGTATGATAGGAATAC
ATAAACTGTGAAACTTAAAAGCTGCTGCCTCACCAGAGCAGCTGCCACCAAGGGCTGCTT
CATGGGGTTGTCCACCCAGGCTGGGCTCCTCTCTACTGCTGGATCCGAGATTCTGAACCA
GCTGAGGGACAGCCAGTTCTTCTAAGAGGTGCTCCCCTGTGAGTGAGCCTGGCTCCTGTC
ATTGTGCCTGTAGGATCAGGGTTGGAAGAGTCTGGGCTGTTTTTAGACCTTCCAGTCAAT
TGTATTTGCATAAAGAATTTTGTAATAAATAGAAAAGCCTCTGCTCTGATCAGTCCTGGT
GCTTTGGCCTCATCTAAGCCCAGAGCACTCCTGGCCTCCTCCGAGCCCTAGTGGAGGAGA
ACCACAGCTTCCTGCTGATCAGATGCACCATAATGAGTAGGACAGCTCAAGACCCAGGCA
AACCAGGCTGCCTTTTATCACTTGCTCATTTCTCATGAACTCAGACCTTCTGTCTCTCCC
TCCCCACCTTCAAGATTCTGAGTTCATAACTGAACAGTCAGGATCCTCTCTTGTTTTCTT
CCCAAGGAAGAAACAGACTCTTGAAAAAAAGCAGAACCAGGCAGCCTAGAAGAAACAGCT
GCATGACCCTGAAAAGGAGAACACTGCACTCCAAGGACAAGGCACTGGGGCAGACAGTCG
CCATCCAGACACAACCCAGAGCACTTTCACCACAGCGTATCAGTGCAAGAGCATGTTCCG
TTTCATCGCACACGTCATCCAAGCCAGACACGTGCGAAGGAGAAATGAATGACCCAGGCA
GTGTCCCTGTAGTCATGGACCCAGACTGTCAACAAGCCCACACCTCGAAGAACAACTTGA
GACAGTGATAAGAATTCAAGAAAACAAGATACTGTGATCAGGAGGGTGAGTGAGGGCACA
ACTTGGATCGTCCAGAAACACCTCCCTGTGGCAGGCATTTAGGGCAAAGGGAGCAGCACG
GAGTCTTGTTCAAGGAGTAAGATCAGAGTAACTACAGAGTCGTGGTGTTAGGAAGTGGAA
GGCAAGAGATAGGAAGGGAAGCGGGGCACTGGTGAGGACATGACGGGAGGCTTAAAGCTG
ATACTTAAACACATTGGGAATGTTCTATCAGTTAAGGCCTCTGGAGGTGAAATGAACAAA
ATCTACCTTAAACTAGTTAAAGAAATAAAGATAACATTGGCTCCCAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAAAAAAAAAAAAAAAAAAAAAATACTCTGTAGCTCCATCCAAATCAAGAAATCGCCAG
CATCTCTGAAGCCCACTGTGCCCTTCCCTGACTCACAACCTCTTCCAATACCCCTTTTCT
AGCCTTCTGCTTTTTTCCTTTTATTTTCACCCCTCAATTTGACTTGTATGATAGGAATAC
ATAAACTGTGAAACTTAAAAGCTGCTGCCTCACCAGAGCAGCTGCCACCAAGGGCTGCTT
CATGGGGTTGTCCACCCAGGCTGGGCTCCTCTCTACTGCTGGATCCGAGATTCTGAACCA
GCTGAGGGACAGCCAGTTCTTCTAAGAGGTGCTCCCCTGTGAGTGAGCCTGGCTCCTGTC
ATTGTGCCTGTAGGATCAGGGTTGGAAGAGTCTGGGCTGTTTTTAGACCTTCCAGTCAAT
TGTATTTGCATAAAGAATTTTGTAATAAATAGAAAAGCCTCTGCTCTGATCAGTCCTGGT
GCTTTGGCCTCATCTAAGCCCAGAGCACTCCTGGCCTCCTCCGAGCCCTAGTGGAGGAGA
ACCACAGCTTCCTGCTGATCAGATGCACCATAATGAGTAGGACAGCTCAAGACCCAGGCA
AACCAGGCTGCCTTTTATCACTTGCTCATTTCTCATGAACTCAGACCTTCTGTCTCTCCC
TCCCCACCTTCAAGATTCTGAGTTCATAACTGAACAGTCAGGATCCTCTCTTGTTTTCTT
CCCAAGGAAGAAACAGACTCTTGAAAAAAAGCAGAACCAGGCAGCCTAGAAGAAACAGCT
GCATGACCCTGAAAAGGAGAACACTGCACTCCAAGGACAAGGCACTGGGGCAGACAGTCG
CCATCCAGACACAACCCAGAGCACTTTCACCACAGCGTATCAGTGCAAGAGCATGTTCCG
TTTCATCGCACACGTCATCCAAGCCAGACACGTGCGAAGGAGAAATGAATGACCCAGGCA
GTGTCCCTGTAGTCATGGACCCAGACTGTCAACAAGCCCACACCTCGAAGAACAACTTGA
GACAGTGATAAGAATTCAAGAAAACAAGATACTGTGATCAGGAGGGTGAGTGAGGGCACA
ACTTGGATCGTCCAGAAACACCTCCCTGTGGCAGGCATTTAGGGCAAAGGGAGCAGCACG
GAGTCTTGTTCAAGGAGTAAGATCAGAGTAACTACAGAGTCGTGGTGTTAGGAAGTGGAA
GGCAAGAGATAGGAAGGGAAGCGGGGCACTGGTGAGGACATGACGGGAGGCTTAAAGCTG
ATACTTAAACACATTGGGAATGTTCTATCAGTTAAGGCCTCTGGAGGTGAAATGAACAAA
ATCTACCTTAAACTAGTTAAAGAAATAAAGATAACATTGGCTCCCAAAAAAAAAAAAAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

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               27-747, gnl|bosTau2|chr10 (57275657-57274940)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               27-747, gnl|bosTau2|chr10 (57275657-57274940)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               amn (0.417711)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               cte (0.29274)
               

               
               csk (0.281492)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               col (0.195008)
               

               
               sto (0.179824)
               

               
               cli (0.152812)
               

               
               lun (0.150489)
               

               
               hyp (0.142837)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               eep (0.122564)
               

               
               jca (0.11396)
               

               
               spc (0.113366)

	amn (0.417711)
	cte (0.29274)
	csk (0.281492)
	fce (0.271592)
	cbe (0.239234)
	col (0.195008)
	sto (0.179824)
	cli (0.152812)
	lun (0.150489)
	hyp (0.142837)
	nmm (0.132802)
	ova (0.129132)
	eep (0.122564)
	jca (0.11396)
	spc (0.113366)