Ss1.1-Pig4-TMW8045D11.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCCAGAGGAGGACCTGGGACCAGGACTGTCGGTGCTTGGTGGTCTCTTCCTGCTCTTCGT CCTGGAGAACATGCTAGGGCTTTTGCGGCGTCGAGGGCTCGGGCCAAAATGCTGCCGGCA AAAAAGAAAGGATCTCAGATCTCCAAACCTGGACCCAGAGGACGGCACTGGGATGGCCCT TCAGCCCCTACAGGCACCTCCAGAGCCAGGGGCTCAGGGCCCGAGGGAACAGGACAACCA GCCCCCAGCAGCCCCGGCCCCTCCAGGGCACCAAGGCCACAGTCACGGGTACCAGGGCAG CGGGGGCACCAATATCACATGGATGGTCCTCCTGGGAGATGGTCTGCACAACCTCACTGA CGGACTGGCGATAGGTGCTGCCTTCTCTGATGGCTTCTCCAGTGGCCTCAGCACCACCGT AGCAGTCTTCTGCCATGAGCTGCCCCACGAACTGGGTGACTTCGCGATGCTGCTCCGGGC AGGGCTGCCCTTCCGGCGGCTGCTGCTGCTGAGCCTGGTGTCTGGCCTTCTGGGACTGGG GGGTGCAGCCCTGGGGGTGGGGCTCAGTTTGGGCCCTGTCCCCCTCACTCCCTGGGTGTT TGGGGTCACTGCTGGGGTCTTCCTCTATGTGGCCCTTGTGGACATGCTACCGGCCCTGCT GCATCCTCCTGAGCCCCTCCCTGCGCTCAGTGTGCTACTGCAGGGGCTGGGGCTGCTGCT GGGGGGCGGCCTCATGGTCACCATAGCCCTGCTGGAGGAGCAGCTGTGGCCTCTGGTCTC TGATGGCTGATGGGGGCCAGCGGAAAGGCGTCCAGGTTGCCCTTCCTTCCCCCCAACCAT AGGAATGGAGGCGGGACACAGGGCCAGTAGGAGCAATAGGATTTTAATAAACAGAACCCA TCCCAAAAAAAAAAAAAAAAAAAACTCCTGAGCCCCTCCCTGCGCTCA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCCAGAGGAGGACCTGGGACCAGGACTGTCGGTGCTTGGTGGTCTCTTCCTGCTCTTCGT CCTGGAGAACATGCTAGGGCTTTTGCGGCGTCGAGGGCTCGGGCCAAAATGCTGCCGGCA AAAAAGAAAGGATCTCAGATCTCCAAACCTGGACCCAGAGGACGGCACTGGGATGGCCCT TCAGCCCCTACAGGCACCTCCAGAGCCAGGGGCTCAGGGCCCGAGGGAACAGGACAACCA GCCCCCAGCAGCCCCGGCCCCTCCAGGGCACCAAGGCCACAGTCACGGGTACCAGGGCAG CGGGGGCACCAATATCACATGGATGGTCCTCCTGGGAGATGGTCTGCACAACCTCACTGA CGGACTGGCGATAGGTGCTGCCTTCTCTGATGGCTTCTCCAGTGGCCTCAGCACCACCGT AGCAGTCTTCTGCCATGAGCTGCCCCACGAACTGGGTGACTTCGCGATGCTGCTCCGGGC AGGGCTGCCCTTCCGGCGGCTGCTGCTGCTGAGCCTGGTGTCTGGCCTTCTGGGACTGGG GGGTGCAGCCCTGGGGGTGGGGCTCAGTTTGGGCCCTGTCCCCCTCACTCCCTGGGTGTT TGGGGTCACTGCTGGGGTCTTCCTCTATGTGGCCCTTGTGGACATGCTACCGGCCCTGCT GCATCCTCCTGAGCCCCTCCCTGCGCTCAGTGTGCTACTGCAGGGGCTGGGGCTGCTGCT GGGGGGCGGCCTCATGGTCACCATAGCCCTGCTGGAGGAGCAGCTGTGGCCTCTGGTCTC TGATGGCTGATGGGGGCCAGCGGAAAGGCGTCCAGGTTGCCCTTCCTTCCCCCCAACCAT AGGAATGGAGGCGGGACACAGGGCCAGTAGGAGCAATAGGATTTTAATAAACAGAACCCA TCCCAAAAAAAAAAAAAAAAAAAACTCCTGAGCCCCTCCCTGCGCTCA |
| Aligned organism(s): 20 entry(ies) | More info |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
| 197-377, gnl|bosTau2|chr5 (33389140-33388960) | |
| 197-377, gnl|Hg17|chr12 (54916626-54916800) | |
| 197-377, gnl|Mm7|chr10 (127898654-127898483) | |
| 455-646, gnl|bosTau2|chr5 (33388580-33388389) | |
| 455-646, gnl|canFam2|chr10 (3539622-3539828) | |
| 455-646, gnl|danRer3|chr23 (45821776-45821984) | |
| 455-646, gnl|dasNov1|scaffold_12794 (61177-61377) | |
| 455-646, gnl|echTel1|scaffold_295271 (7386-7596) | |
| 455-646, gnl|fr1|chrUn (26773177-26773392) | |
| 455-646, gnl|hg17|chr12 (54917188-54917398) | |
| 455-646, gnl|Hg17|chr12 (54917200-54917391) | |
| 455-646, gnl|loxAfr1|scaffold_69560 (30724-30934) | |
| 455-646, gnl|mm7|chr10 (127898168-127897958) | |
| 455-646, gnl|Mm7|chr10 (127898154-127897963) | |
| 455-646, gnl|oryCun1|scaffold_178686 (39205-38995) | |
| 455-646, gnl|panTro1|chr10 (56167962-56168172) | |
| 455-646, gnl|rheMac2|chr11 (53307612-53307822) | |
| 455-646, gnl|rn3|chr7 (1688510-1688301) | |
| 455-646, gnl|tetNig1|chr2 (16161801-16161593) | |
| 455-646, gnl|xenTro1|scaffold_85 (2348132-2348349) |
| Aligned organism(s): 20 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 197-377, gnl|bosTau2|chr5 (33389140-33388960) | |
| 197-377, gnl|Hg17|chr12 (54916626-54916800) | |
| 197-377, gnl|Mm7|chr10 (127898654-127898483) | |
| 455-646, gnl|bosTau2|chr5 (33388580-33388389) | |
| 455-646, gnl|canFam2|chr10 (3539622-3539828) | |
| 455-646, gnl|danRer3|chr23 (45821776-45821984) | |
| 455-646, gnl|dasNov1|scaffold_12794 (61177-61377) | |
| 455-646, gnl|echTel1|scaffold_295271 (7386-7596) | |
| 455-646, gnl|fr1|chrUn (26773177-26773392) | |
| 455-646, gnl|hg17|chr12 (54917188-54917398) | |
| 455-646, gnl|Hg17|chr12 (54917200-54917391) | |
| 455-646, gnl|loxAfr1|scaffold_69560 (30724-30934) | |
| 455-646, gnl|mm7|chr10 (127898168-127897958) | |
| 455-646, gnl|Mm7|chr10 (127898154-127897963) | |
| 455-646, gnl|oryCun1|scaffold_178686 (39205-38995) | |
| 455-646, gnl|panTro1|chr10 (56167962-56168172) | |
| 455-646, gnl|rheMac2|chr11 (53307612-53307822) | |
| 455-646, gnl|rn3|chr7 (1688510-1688301) | |
| 455-646, gnl|tetNig1|chr2 (16161801-16161593) | |
| 455-646, gnl|xenTro1|scaffold_85 (2348132-2348349) |
| Expressed library(ies): 4 entry(ies) | More info |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
| nje (0.33184) | |
| nco (0.323468) | |
| cli (0.152812) | |
| eje (0.0988338) |
| Expressed library(ies): 4 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nje (0.33184) | |
| nco (0.323468) | |
| cli (0.152812) | |
| eje (0.0988338) |