Ss1.1-Pig4-TMW8045D19.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TTCTCGGGCCGCGCAGCGCAGCTCCCTGGCCTCGCCGCGCCGAGCGGAGCGGAGCGGCCG GCCTGACGGGGCTGCCCCCGACCGAGCTCGCCTCCCCCCGCGGTCAGGCACGTCCCCGGC CGGCCCAACCCGCGCCGCCGGCCGCCAGACCCAGAGGGGCGGCCTGAGCTCGGGGCCTCC CACGGGAGGGGCCCGCGTCCGAGGGAACCACTTCGACTTCCCAGCCCTCGGAGCTCCCGT GGGCACGACCGTGAGCCGACAGGTTCCAGAGGCCCCTCCGGTCCCGGCAAGGCTTCTCTC CGCGTTCCCGAGGAGCCTGGTCAGAGCGCTCTGTCCCCAAACACTGCACCTGCCGGCGGC CCCAACCCAGCGGGAGAAGTGGACATGAGGTTGGCAGGCCCCCTCCGCATCGTGGTCCTG GTCCTCTCCGTGGGCCTCACCTGGATCCTGGTGAGCATCCTCTTCGGCGGGCCTGGCAGT GGCTTTCCCCGCATCCAGCAGCTTTTTGCCAGCCCGGAGAACTCAGTGACTGCAGAGCCA CGGGCCAGGAAGTACAAGTGCGGCCTGCCCCAGCCATGTCCTGAGGAGCACCTGGCCTTC CGCATGGTCAGCGGGGCTGCCAACGTCATTGGACCCAAGATCTGCCTGGAGGACAAGATG CTCATGAGCAGTGTCAAGGACAACGTGGGCCGTGGACTGAACGTCGCCCTGGTGAACGGG GTAAGCGGAGAGCTCATTGAGGCCCGCGCCTTCGACATGTGGGCAGGCGATGTCAACGAC CTGCTGAAGTTTATTCGGCCGCTGCATGAAGGCACCCTGGTGTTTGTGGCCTCCTACGAC GACCCCGCCACTAAGATGAACGAAGAGACCAGGAAGCTGTTCAGTGACCTGGGCAGCAAG AACGTCAAGGACCTGGCCTTCCGGGACAGCTGGGTGTTTGTGGGGGCCAAGGGTGTGCAG AACAAGAGCCCCTTTGAGCAGCACGTGAAGAACAGCAGGCACACCAATAAGTACGAAGGC TGGCCCGAGGCGCTCGAGATGGAGGGCTGCATCCCGCGAAGGACCACAGCCAGCTAGCGA CCGAGCCCGGGACAGCACGAGGGACGCAGCGTGTGCCCAGCCCGGGGAGGCCTGAGCCCA CGCCCGGCCAGGAGCGTTCTCTTGCCCCGACACGTGGGGGCGCCAAGGCGGTGACCAGCG ACCAGGCCCTGAGCTGTCGTGAGGGTGCACGGCCGCCGACCCTGTCGCGCCTGGTCAGGG GGCCCCAGGGACCCGTCCCCTTTTCCTAAAGCTGTCCCCCTGGTCAGCTCCGACCCAAGT CCCCAGCTCCTGCAGCCCCAAGCCTGGGAGCAGCCGCCTGGCAGCTTGGAGCCCTTCTAG CACCTCACCAGCCCAGAGTGGGTTCGCTCTTTCCGTGTGACTCGTGATGAGCCACACCTG GCGGCTCCGTCGGACATCTGCTGCCTCCAGCCTTGCTCCCCGCACAGAGGAGCGGCCACT TTGGAGCCGGGCCTGTCGGGTGGGGAGGCGGCGAGTCTGATCACAGTCACTAGCACGGTG GGTGGCAGCTCCTGCAGTTTGTCCGAGGGCCTGCTTTCTAGACGACCTCTCAATAAACTG GTGGCTCCAGTGGAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TTCTCGGGCCGCGCAGCGCAGCTCCCTGGCCTCGCCGCGCCGAGCGGAGCGGAGCGGCCG GCCTGACGGGGCTGCCCCCGACCGAGCTCGCCTCCCCCCGCGGTCAGGCACGTCCCCGGC CGGCCCAACCCGCGCCGCCGGCCGCCAGACCCAGAGGGGCGGCCTGAGCTCGGGGCCTCC CACGGGAGGGGCCCGCGTCCGAGGGAACCACTTCGACTTCCCAGCCCTCGGAGCTCCCGT GGGCACGACCGTGAGCCGACAGGTTCCAGAGGCCCCTCCGGTCCCGGCAAGGCTTCTCTC CGCGTTCCCGAGGAGCCTGGTCAGAGCGCTCTGTCCCCAAACACTGCACCTGCCGGCGGC CCCAACCCAGCGGGAGAAGTGGACATGAGGTTGGCAGGCCCCCTCCGCATCGTGGTCCTG GTCCTCTCCGTGGGCCTCACCTGGATCCTGGTGAGCATCCTCTTCGGCGGGCCTGGCAGT GGCTTTCCCCGCATCCAGCAGCTTTTTGCCAGCCCGGAGAACTCAGTGACTGCAGAGCCA CGGGCCAGGAAGTACAAGTGCGGCCTGCCCCAGCCATGTCCTGAGGAGCACCTGGCCTTC CGCATGGTCAGCGGGGCTGCCAACGTCATTGGACCCAAGATCTGCCTGGAGGACAAGATG CTCATGAGCAGTGTCAAGGACAACGTGGGCCGTGGACTGAACGTCGCCCTGGTGAACGGG GTAAGCGGAGAGCTCATTGAGGCCCGCGCCTTCGACATGTGGGCAGGCGATGTCAACGAC CTGCTGAAGTTTATTCGGCCGCTGCATGAAGGCACCCTGGTGTTTGTGGCCTCCTACGAC GACCCCGCCACTAAGATGAACGAAGAGACCAGGAAGCTGTTCAGTGACCTGGGCAGCAAG AACGTCAAGGACCTGGCCTTCCGGGACAGCTGGGTGTTTGTGGGGGCCAAGGGTGTGCAG AACAAGAGCCCCTTTGAGCAGCACGTGAAGAACAGCAGGCACACCAATAAGTACGAAGGC TGGCCCGAGGCGCTCGAGATGGAGGGCTGCATCCCGCGAAGGACCACAGCCAGCTAGCGA CCGAGCCCGGGACAGCACGAGGGACGCAGCGTGTGCCCAGCCCGGGGAGGCCTGAGCCCA CGCCCGGCCAGGAGCGTTCTCTTGCCCCGACACGTGGGGGCGCCAAGGCGGTGACCAGCG ACCAGGCCCTGAGCTGTCGTGAGGGTGCACGGCCGCCGACCCTGTCGCGCCTGGTCAGGG GGCCCCAGGGACCCGTCCCCTTTTCCTAAAGCTGTCCCCCTGGTCAGCTCCGACCCAAGT CCCCAGCTCCTGCAGCCCCAAGCCTGGGAGCAGCCGCCTGGCAGCTTGGAGCCCTTCTAG CACCTCACCAGCCCAGAGTGGGTTCGCTCTTTCCGTGTGACTCGTGATGAGCCACACCTG GCGGCTCCGTCGGACATCTGCTGCCTCCAGCCTTGCTCCCCGCACAGAGGAGCGGCCACT TTGGAGCCGGGCCTGTCGGGTGGGGAGGCGGCGAGTCTGATCACAGTCACTAGCACGGTG GGTGGCAGCTCCTGCAGTTTGTCCGAGGGCCTGCTTTCTAGACGACCTCTCAATAAACTG GTGGCTCCAGTGGAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 214-324, - strand, RNAz p=0.88095 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 214-324, - strand, RNAz p=0.88095 |
| Aligned organism(s): 30 entry(ies) | More info |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
| 2-324, gnl|bosTau2|chrX (14669410-14669727) | |
| 2-324, gnl|canFam2|chrX (125257115-125257491) | |
| 2-324, gnl|echTel1|scaffold_283084 (37793-38028) | |
| 2-324, gnl|hg17|chrX (153307856-153308245) | |
| 2-324, gnl|Hg17|chrX (153308249-153307954) | |
| 2-324, gnl|mm7|chrX (69779411-69779802) | |
| 2-324, gnl|Mm7|chrX (69779806-69779495) | |
| 2-324, gnl|oryCun1|scaffold_173289 (757-363) | |
| 2-324, gnl|rheMac2|chrX (152536424-152536813) | |
| 2-324, gnl|rn3|chrX (160294184-160293791) | |
| 533-660, gnl|bosTau2|chrX (14674620-14674747) | |
| 533-660, gnl|canFam2|chrX (125252795-125252942) | |
| 533-660, gnl|danRer3|chr23 (42221119-42221263) | |
| 533-660, gnl|echTel1|scaffold_315578 (83598-83746) | |
| 533-660, gnl|fr1|chrUn (19783077-19782936) | |
| 533-660, gnl|hg17|chrX (153300505-153300652) | |
| 533-660, gnl|Hg17|chrX (153300635-153300508) | |
| 533-660, gnl|loxAfr1|scaffold_39992 (37185-37333) | |
| 533-660, gnl|mm7|chrX (69774273-69774420) | |
| 533-660, gnl|Mm7|chrX (69774405-69774276) | |
| 533-660, gnl|monDom2|scaffold_197 (393318-393472) | |
| 533-660, gnl|oryCun1|scaffold_173289 (5499-5352) | |
| 533-660, gnl|panTro1|chrX (158572923-158573070) | |
| 533-660, gnl|rheMac2|chrX (152528400-152528547) | |
| 533-660, gnl|rn3|chrX (160299311-160299164) | |
| 533-660, gnl|tetNig1|chr9 (3525337-3525221) | |
| 533-660, gnl|xenTro1|scaffold_750 (193771-193625) | |
| 979-1628, gnl|bosTau2|chrX (14677128-14677760) | |
| 979-1628, gnl|Hg17|chrX (153298944-153298212) | |
| 979-1628, gnl|Mm7|chrX (69772087-69771399) |
| Aligned organism(s): 30 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 2-324, gnl|bosTau2|chrX (14669410-14669727) | |
| 2-324, gnl|canFam2|chrX (125257115-125257491) | |
| 2-324, gnl|echTel1|scaffold_283084 (37793-38028) | |
| 2-324, gnl|hg17|chrX (153307856-153308245) | |
| 2-324, gnl|Hg17|chrX (153308249-153307954) | |
| 2-324, gnl|mm7|chrX (69779411-69779802) | |
| 2-324, gnl|Mm7|chrX (69779806-69779495) | |
| 2-324, gnl|oryCun1|scaffold_173289 (757-363) | |
| 2-324, gnl|rheMac2|chrX (152536424-152536813) | |
| 2-324, gnl|rn3|chrX (160294184-160293791) | |
| 533-660, gnl|bosTau2|chrX (14674620-14674747) | |
| 533-660, gnl|canFam2|chrX (125252795-125252942) | |
| 533-660, gnl|danRer3|chr23 (42221119-42221263) | |
| 533-660, gnl|echTel1|scaffold_315578 (83598-83746) | |
| 533-660, gnl|fr1|chrUn (19783077-19782936) | |
| 533-660, gnl|hg17|chrX (153300505-153300652) | |
| 533-660, gnl|Hg17|chrX (153300635-153300508) | |
| 533-660, gnl|loxAfr1|scaffold_39992 (37185-37333) | |
| 533-660, gnl|mm7|chrX (69774273-69774420) | |
| 533-660, gnl|Mm7|chrX (69774405-69774276) | |
| 533-660, gnl|monDom2|scaffold_197 (393318-393472) | |
| 533-660, gnl|oryCun1|scaffold_173289 (5499-5352) | |
| 533-660, gnl|panTro1|chrX (158572923-158573070) | |
| 533-660, gnl|rheMac2|chrX (152528400-152528547) | |
| 533-660, gnl|rn3|chrX (160299311-160299164) | |
| 533-660, gnl|tetNig1|chr9 (3525337-3525221) | |
| 533-660, gnl|xenTro1|scaffold_750 (193771-193625) | |
| 979-1628, gnl|bosTau2|chrX (14677128-14677760) | |
| 979-1628, gnl|Hg17|chrX (153298944-153298212) | |
| 979-1628, gnl|Mm7|chrX (69772087-69771399) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| cov (0.528611) | |
| amn (0.417711) | |
| pty (0.285429) | |
| nca (0.273748) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| ebs (0.118301) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cov (0.528611) | |
| amn (0.417711) | |
| pty (0.285429) | |
| nca (0.273748) | |
| fce (0.271592) | |
| eru (0.240096) | |
| ece (0.229305) | |
| nlu (0.191681) | |
| cki (0.165235) | |
| csp (0.161186) | |
| cli (0.152812) | |
| cag (0.151194) | |
| ebs (0.118301) |